data_1KW1 # _model_server_result.job_id d3bLsYs-cQMkwmC2pEUbhw _model_server_result.datetime_utc '2024-11-18 17:40:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kw1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 1KW1 # _exptl.entry_id 1KW1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 276.135 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'L-GULURONIC ACID 6-PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97 _cell.angle_gamma 90 _cell.entry_id 1KW1 _cell.length_a 123.978 _cell.length_b 42.071 _cell.length_c 91.837 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KW1 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H 1 1 A,B,C,D,E,F,G,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 123.978 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 33 A GLU 33 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.413 ? metalc ? metalc2 A OD2 ASP 62 A ASP 62 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? metalc ? metalc3 D O3 LG6 . A LG6 502 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.562 ? metalc ? metalc4 D O4 LG6 . A LG6 502 1_555 C MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc5 C MG MG . A MG 602 1_555 G O HOH . A HOH 681 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 C MG MG . A MG 602 1_555 G O HOH . A HOH 682 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc7 B OE2 GLU 33 B GLU 33 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc8 B OD2 ASP 62 B ASP 62 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.231 ? metalc ? metalc9 F O3 LG6 . B LG6 501 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.503 ? metalc ? metalc10 F O4 LG6 . B LG6 501 1_555 E MG MG . B MG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc11 E MG MG . B MG 601 1_555 H O HOH . B HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc12 E MG MG . B MG 601 1_555 H O HOH . B HOH 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.412 ? # _chem_comp.formula 'C6 H13 O10 P' _chem_comp.formula_weight 276.135 _chem_comp.id LG6 _chem_comp.mon_nstd_flag . _chem_comp.name 'L-GULURONIC ACID 6-PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 LG6 sing 194 n n C1 O1 LG6 sing 195 n n C1 C3 LG6 sing 196 n n C1 H1 LG6 sing 197 n n O2A C2 LG6 doub 198 n n C2 O2B LG6 sing 199 n n O2B H2B LG6 sing 200 n n O1 HO1 LG6 sing 201 n n C3 O3 LG6 sing 202 n n C3 C4 LG6 sing 203 n n C3 H3 LG6 sing 204 n n O3 HO3 LG6 sing 205 n n C4 C5 LG6 sing 206 n n C4 O4 LG6 sing 207 n n C4 H4 LG6 sing 208 n n C5 C6 LG6 sing 209 n n C5 O5 LG6 sing 210 n n C5 H5 LG6 sing 211 n n O4 HO4 LG6 sing 212 n n C6 O6 LG6 sing 213 n n C6 H61 LG6 sing 214 n n C6 H62 LG6 sing 215 n n O5 HO5 LG6 sing 216 n n P O6 LG6 sing 217 n n P O1P LG6 doub 218 n n P O2P LG6 sing 219 n n P O3P LG6 sing 220 n n O2P HOP2 LG6 sing 221 n n O3P HOP3 LG6 sing 222 n n # _atom_sites.entry_id 1KW1 _atom_sites.fract_transf_matrix[1][1] 0.008066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00099 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 602 602 MG MG . D 3 LG6 A 1 502 502 LG6 LG6 . E 2 MG B 1 601 601 MG MG . F 3 LG6 B 1 501 501 LG6 LG6 . G 4 HOH A 1 603 1 HOH HOH . G 4 HOH A 2 604 2 HOH HOH . G 4 HOH A 3 605 8 HOH HOH . G 4 HOH A 4 606 10 HOH HOH . G 4 HOH A 5 607 11 HOH HOH . G 4 HOH A 6 608 12 HOH HOH . G 4 HOH A 7 609 15 HOH HOH . G 4 HOH A 8 610 19 HOH HOH . G 4 HOH A 9 611 23 HOH HOH . G 4 HOH A 10 612 28 HOH HOH . G 4 HOH A 11 613 31 HOH HOH . G 4 HOH A 12 614 36 HOH HOH . G 4 HOH A 13 615 41 HOH HOH . G 4 HOH A 14 616 42 HOH HOH . G 4 HOH A 15 617 47 HOH HOH . G 4 HOH A 16 618 48 HOH HOH . G 4 HOH A 17 619 50 HOH HOH . G 4 HOH A 18 620 51 HOH HOH . G 4 HOH A 19 621 53 HOH HOH . G 4 HOH A 20 622 60 HOH HOH . G 4 HOH A 21 623 61 HOH HOH . G 4 HOH A 22 624 62 HOH HOH . G 4 HOH A 23 625 64 HOH HOH . G 4 HOH A 24 626 66 HOH HOH . G 4 HOH A 25 627 67 HOH HOH . G 4 HOH A 26 628 71 HOH HOH . G 4 HOH A 27 629 72 HOH HOH . G 4 HOH A 28 630 73 HOH HOH . G 4 HOH A 29 631 74 HOH HOH . G 4 HOH A 30 632 75 HOH HOH . G 4 HOH A 31 633 76 HOH HOH . G 4 HOH A 32 634 77 HOH HOH . G 4 HOH A 33 635 78 HOH HOH . G 4 HOH A 34 636 79 HOH HOH . G 4 HOH A 35 637 80 HOH HOH . G 4 HOH A 36 638 83 HOH HOH . G 4 HOH A 37 639 84 HOH HOH . G 4 HOH A 38 640 85 HOH HOH . G 4 HOH A 39 641 86 HOH HOH . G 4 HOH A 40 642 87 HOH HOH . G 4 HOH A 41 643 88 HOH HOH . G 4 HOH A 42 644 89 HOH HOH . G 4 HOH A 43 645 90 HOH HOH . G 4 HOH A 44 646 91 HOH HOH . G 4 HOH A 45 647 92 HOH HOH . G 4 HOH A 46 648 94 HOH HOH . G 4 HOH A 47 649 95 HOH HOH . G 4 HOH A 48 650 96 HOH HOH . G 4 HOH A 49 651 97 HOH HOH . G 4 HOH A 50 652 98 HOH HOH . G 4 HOH A 51 653 100 HOH HOH . G 4 HOH A 52 654 101 HOH HOH . G 4 HOH A 53 655 102 HOH HOH . G 4 HOH A 54 656 103 HOH HOH . G 4 HOH A 55 657 104 HOH HOH . G 4 HOH A 56 658 105 HOH HOH . G 4 HOH A 57 659 106 HOH HOH . G 4 HOH A 58 660 107 HOH HOH . G 4 HOH A 59 661 108 HOH HOH . G 4 HOH A 60 662 113 HOH HOH . G 4 HOH A 61 663 114 HOH HOH . G 4 HOH A 62 664 142 HOH HOH . G 4 HOH A 63 665 143 HOH HOH . G 4 HOH A 64 666 144 HOH HOH . G 4 HOH A 65 667 145 HOH HOH . G 4 HOH A 66 668 148 HOH HOH . G 4 HOH A 67 669 151 HOH HOH . G 4 HOH A 68 670 152 HOH HOH . G 4 HOH A 69 671 158 HOH HOH . G 4 HOH A 70 672 159 HOH HOH . G 4 HOH A 71 673 162 HOH HOH . G 4 HOH A 72 674 163 HOH HOH . G 4 HOH A 73 675 164 HOH HOH . G 4 HOH A 74 676 165 HOH HOH . G 4 HOH A 75 677 174 HOH HOH . G 4 HOH A 76 678 178 HOH HOH . G 4 HOH A 77 679 180 HOH HOH . G 4 HOH A 78 680 186 HOH HOH . G 4 HOH A 79 681 187 HOH HOH . G 4 HOH A 80 682 188 HOH HOH . G 4 HOH A 81 683 189 HOH HOH . G 4 HOH A 82 684 193 HOH HOH . H 4 HOH B 1 602 3 HOH HOH . H 4 HOH B 2 603 4 HOH HOH . H 4 HOH B 3 604 5 HOH HOH . H 4 HOH B 4 605 6 HOH HOH . H 4 HOH B 5 606 7 HOH HOH . H 4 HOH B 6 607 9 HOH HOH . H 4 HOH B 7 608 13 HOH HOH . H 4 HOH B 8 609 14 HOH HOH . H 4 HOH B 9 610 16 HOH HOH . H 4 HOH B 10 611 17 HOH HOH . H 4 HOH B 11 612 18 HOH HOH . H 4 HOH B 12 613 20 HOH HOH . H 4 HOH B 13 614 21 HOH HOH . H 4 HOH B 14 615 22 HOH HOH . H 4 HOH B 15 616 24 HOH HOH . H 4 HOH B 16 617 25 HOH HOH . H 4 HOH B 17 618 26 HOH HOH . H 4 HOH B 18 619 27 HOH HOH . H 4 HOH B 19 620 29 HOH HOH . H 4 HOH B 20 621 30 HOH HOH . H 4 HOH B 21 622 32 HOH HOH . H 4 HOH B 22 623 33 HOH HOH . H 4 HOH B 23 624 34 HOH HOH . H 4 HOH B 24 625 35 HOH HOH . H 4 HOH B 25 626 37 HOH HOH . H 4 HOH B 26 627 38 HOH HOH . H 4 HOH B 27 628 39 HOH HOH . H 4 HOH B 28 629 40 HOH HOH . H 4 HOH B 29 630 43 HOH HOH . H 4 HOH B 30 631 44 HOH HOH . H 4 HOH B 31 632 45 HOH HOH . H 4 HOH B 32 633 46 HOH HOH . H 4 HOH B 33 634 49 HOH HOH . H 4 HOH B 34 635 52 HOH HOH . H 4 HOH B 35 636 54 HOH HOH . H 4 HOH B 36 637 55 HOH HOH . H 4 HOH B 37 638 56 HOH HOH . H 4 HOH B 38 639 57 HOH HOH . H 4 HOH B 39 640 58 HOH HOH . H 4 HOH B 40 641 59 HOH HOH . H 4 HOH B 41 642 63 HOH HOH . H 4 HOH B 42 643 65 HOH HOH . H 4 HOH B 43 644 68 HOH HOH . H 4 HOH B 44 645 69 HOH HOH . H 4 HOH B 45 646 70 HOH HOH . H 4 HOH B 46 647 81 HOH HOH . H 4 HOH B 47 648 82 HOH HOH . H 4 HOH B 48 649 93 HOH HOH . H 4 HOH B 49 650 99 HOH HOH . H 4 HOH B 50 651 109 HOH HOH . H 4 HOH B 51 652 110 HOH HOH . H 4 HOH B 52 653 111 HOH HOH . H 4 HOH B 53 654 112 HOH HOH . H 4 HOH B 54 655 115 HOH HOH . H 4 HOH B 55 656 116 HOH HOH . H 4 HOH B 56 657 117 HOH HOH . H 4 HOH B 57 658 118 HOH HOH . H 4 HOH B 58 659 119 HOH HOH . H 4 HOH B 59 660 120 HOH HOH . H 4 HOH B 60 661 121 HOH HOH . H 4 HOH B 61 662 122 HOH HOH . H 4 HOH B 62 663 123 HOH HOH . H 4 HOH B 63 664 124 HOH HOH . H 4 HOH B 64 665 125 HOH HOH . H 4 HOH B 65 666 126 HOH HOH . H 4 HOH B 66 667 127 HOH HOH . H 4 HOH B 67 668 128 HOH HOH . H 4 HOH B 68 669 129 HOH HOH . H 4 HOH B 69 670 130 HOH HOH . H 4 HOH B 70 671 131 HOH HOH . H 4 HOH B 71 672 132 HOH HOH . H 4 HOH B 72 673 133 HOH HOH . H 4 HOH B 73 674 134 HOH HOH . H 4 HOH B 74 675 135 HOH HOH . H 4 HOH B 75 676 136 HOH HOH . H 4 HOH B 76 677 137 HOH HOH . H 4 HOH B 77 678 138 HOH HOH . H 4 HOH B 78 679 139 HOH HOH . H 4 HOH B 79 680 140 HOH HOH . H 4 HOH B 80 681 141 HOH HOH . H 4 HOH B 81 682 146 HOH HOH . H 4 HOH B 82 683 147 HOH HOH . H 4 HOH B 83 684 149 HOH HOH . H 4 HOH B 84 685 150 HOH HOH . H 4 HOH B 85 686 153 HOH HOH . H 4 HOH B 86 687 154 HOH HOH . H 4 HOH B 87 688 155 HOH HOH . H 4 HOH B 88 689 156 HOH HOH . H 4 HOH B 89 690 157 HOH HOH . H 4 HOH B 90 691 160 HOH HOH . H 4 HOH B 91 692 161 HOH HOH . H 4 HOH B 92 693 166 HOH HOH . H 4 HOH B 93 694 167 HOH HOH . H 4 HOH B 94 695 168 HOH HOH . H 4 HOH B 95 696 169 HOH HOH . H 4 HOH B 96 697 170 HOH HOH . H 4 HOH B 97 698 171 HOH HOH . H 4 HOH B 98 699 172 HOH HOH . H 4 HOH B 99 700 173 HOH HOH . H 4 HOH B 100 701 175 HOH HOH . H 4 HOH B 101 702 176 HOH HOH . H 4 HOH B 102 703 177 HOH HOH . H 4 HOH B 103 704 179 HOH HOH . H 4 HOH B 104 705 181 HOH HOH . H 4 HOH B 105 706 182 HOH HOH . H 4 HOH B 106 707 183 HOH HOH . H 4 HOH B 107 708 184 HOH HOH . H 4 HOH B 108 709 185 HOH HOH . H 4 HOH B 109 710 190 HOH HOH . H 4 HOH B 110 711 191 HOH HOH . H 4 HOH B 111 712 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LG6 . . . D 3 60.909 20.837 21.909 1 35.53 ? C1 LG6 502 A 1 HETATM 2 O O2A LG6 . . . D 3 58.601 20.359 22.442 1 39.26 ? O2A LG6 502 A 1 HETATM 3 C C2 LG6 . . . D 3 59.604 20.085 21.716 1 38.17 ? C2 LG6 502 A 1 HETATM 4 O O2B LG6 . . . D 3 59.52 19.212 20.864 1 39.44 ? O2B LG6 502 A 1 HETATM 5 O O1 LG6 . . . D 3 60.625 22.217 22.188 1 36.62 ? O1 LG6 502 A 1 HETATM 6 C C3 LG6 . . . D 3 61.723 20.248 23.076 1 33.41 ? C3 LG6 502 A 1 HETATM 7 O O3 LG6 . . . D 3 61.511 18.826 23.213 1 32.83 ? O3 LG6 502 A 1 HETATM 8 C C4 LG6 . . . D 3 63.216 20.56 22.859 1 29.83 ? C4 LG6 502 A 1 HETATM 9 C C5 LG6 . . . D 3 63.974 20.48 24.201 1 28.38 ? C5 LG6 502 A 1 HETATM 10 O O4 LG6 . . . D 3 63.775 19.624 21.922 1 29.19 ? O4 LG6 502 A 1 HETATM 11 C C6 LG6 . . . D 3 65.453 20.844 24.021 1 25.85 ? C6 LG6 502 A 1 HETATM 12 O O5 LG6 . . . D 3 63.893 19.147 24.73 1 26.87 ? O5 LG6 502 A 1 HETATM 13 P P LG6 . . . D 3 65.863 23.357 24.226 1 26.86 ? P LG6 502 A 1 HETATM 14 O O6 LG6 . . . D 3 65.537 22.127 23.417 1 26.89 ? O6 LG6 502 A 1 HETATM 15 O O1P LG6 . . . D 3 66.193 24.463 23.274 1 23.59 ? O1P LG6 502 A 1 HETATM 16 O O2P LG6 . . . D 3 67.035 23.098 25.118 1 23.59 ? O2P LG6 502 A 1 HETATM 17 O O3P LG6 . . . D 3 64.698 23.736 25.064 1 22.66 ? O3P LG6 502 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 236 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 17 #