data_1KW7 # _model_server_result.job_id YM_S1xt4wvGEGnxM4zfyvA _model_server_result.datetime_utc '2024-10-13 06:28:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kw7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 1KW7 # _exptl.entry_id 1KW7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KW7 _cell.length_a 61.2 _cell.length_b 61.2 _cell.length_c 97.1 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KW7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 1KW7 _atom_sites.fract_transf_matrix[1][1] 0.016335 _atom_sites.fract_transf_matrix[1][2] 0.009431 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018861 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010297 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 0 CL CL . C 2 CL A 1 178 0 CL CL . D 3 HED A 1 170 0 HED HED . E 4 HOH A 1 171 0 HOH HOH . E 4 HOH A 2 172 0 HOH HOH . E 4 HOH A 3 174 0 HOH HOH . E 4 HOH A 4 175 0 HOH HOH . E 4 HOH A 5 176 0 HOH HOH . E 4 HOH A 6 177 0 HOH HOH . E 4 HOH A 7 179 0 HOH HOH . E 4 HOH A 8 180 0 HOH HOH . E 4 HOH A 9 181 0 HOH HOH . E 4 HOH A 10 182 0 HOH HOH . E 4 HOH A 11 183 0 HOH HOH . E 4 HOH A 12 184 0 HOH HOH . E 4 HOH A 13 185 0 HOH HOH . E 4 HOH A 14 186 0 HOH HOH . E 4 HOH A 15 187 0 HOH HOH . E 4 HOH A 16 188 0 HOH HOH . E 4 HOH A 17 189 0 HOH HOH . E 4 HOH A 18 190 0 HOH HOH . E 4 HOH A 19 191 0 HOH HOH . E 4 HOH A 20 192 0 HOH HOH . E 4 HOH A 21 193 0 HOH HOH . E 4 HOH A 22 194 0 HOH HOH . E 4 HOH A 23 195 0 HOH HOH . E 4 HOH A 24 196 0 HOH HOH . E 4 HOH A 25 197 0 HOH HOH . E 4 HOH A 26 198 0 HOH HOH . E 4 HOH A 27 200 0 HOH HOH . E 4 HOH A 28 201 0 HOH HOH . E 4 HOH A 29 202 0 HOH HOH . E 4 HOH A 30 203 0 HOH HOH . E 4 HOH A 31 204 0 HOH HOH . E 4 HOH A 32 207 0 HOH HOH . E 4 HOH A 33 208 0 HOH HOH . E 4 HOH A 34 209 0 HOH HOH . E 4 HOH A 35 210 0 HOH HOH . E 4 HOH A 36 211 0 HOH HOH . E 4 HOH A 37 213 0 HOH HOH . E 4 HOH A 38 214 0 HOH HOH . E 4 HOH A 39 215 0 HOH HOH . E 4 HOH A 40 216 0 HOH HOH . E 4 HOH A 41 217 0 HOH HOH . E 4 HOH A 42 218 0 HOH HOH . E 4 HOH A 43 219 0 HOH HOH . E 4 HOH A 44 220 0 HOH HOH . E 4 HOH A 45 221 0 HOH HOH . E 4 HOH A 46 222 0 HOH HOH . E 4 HOH A 47 223 0 HOH HOH . E 4 HOH A 48 224 0 HOH HOH . E 4 HOH A 49 225 0 HOH HOH . E 4 HOH A 50 228 0 HOH HOH . E 4 HOH A 51 229 0 HOH HOH . E 4 HOH A 52 230 0 HOH HOH . E 4 HOH A 53 231 0 HOH HOH . E 4 HOH A 54 232 0 HOH HOH . E 4 HOH A 55 233 0 HOH HOH . E 4 HOH A 56 235 0 HOH HOH . E 4 HOH A 57 237 0 HOH HOH . E 4 HOH A 58 238 0 HOH HOH . E 4 HOH A 59 239 0 HOH HOH . E 4 HOH A 60 240 0 HOH HOH . E 4 HOH A 61 242 0 HOH HOH . E 4 HOH A 62 244 0 HOH HOH . E 4 HOH A 63 245 0 HOH HOH . E 4 HOH A 64 246 0 HOH HOH . E 4 HOH A 65 247 0 HOH HOH . E 4 HOH A 66 248 0 HOH HOH . E 4 HOH A 67 249 0 HOH HOH . E 4 HOH A 68 250 0 HOH HOH . E 4 HOH A 69 251 0 HOH HOH . E 4 HOH A 70 254 0 HOH HOH . E 4 HOH A 71 256 0 HOH HOH . E 4 HOH A 72 257 0 HOH HOH . E 4 HOH A 73 259 0 HOH HOH . E 4 HOH A 74 260 0 HOH HOH . E 4 HOH A 75 261 0 HOH HOH . E 4 HOH A 76 263 0 HOH HOH . E 4 HOH A 77 265 0 HOH HOH . E 4 HOH A 78 267 0 HOH HOH . E 4 HOH A 79 268 0 HOH HOH . E 4 HOH A 80 269 0 HOH HOH . E 4 HOH A 81 270 0 HOH HOH . E 4 HOH A 82 271 0 HOH HOH . E 4 HOH A 83 273 0 HOH HOH . E 4 HOH A 84 274 0 HOH HOH . E 4 HOH A 85 277 0 HOH HOH . E 4 HOH A 86 278 0 HOH HOH . E 4 HOH A 87 279 0 HOH HOH . E 4 HOH A 88 280 0 HOH HOH . E 4 HOH A 89 281 0 HOH HOH . E 4 HOH A 90 282 0 HOH HOH . E 4 HOH A 91 283 0 HOH HOH . E 4 HOH A 92 284 0 HOH HOH . E 4 HOH A 93 285 0 HOH HOH . E 4 HOH A 94 286 0 HOH HOH . E 4 HOH A 95 288 0 HOH HOH . E 4 HOH A 96 289 0 HOH HOH . E 4 HOH A 97 290 0 HOH HOH . E 4 HOH A 98 292 0 HOH HOH . E 4 HOH A 99 293 0 HOH HOH . E 4 HOH A 100 294 0 HOH HOH . E 4 HOH A 101 295 0 HOH HOH . E 4 HOH A 102 296 0 HOH HOH . E 4 HOH A 103 297 0 HOH HOH . E 4 HOH A 104 298 0 HOH HOH . E 4 HOH A 105 299 0 HOH HOH . E 4 HOH A 106 300 0 HOH HOH . E 4 HOH A 107 301 0 HOH HOH . E 4 HOH A 108 302 0 HOH HOH . E 4 HOH A 109 303 0 HOH HOH . E 4 HOH A 110 304 0 HOH HOH . E 4 HOH A 111 306 0 HOH HOH . E 4 HOH A 112 307 0 HOH HOH . E 4 HOH A 113 308 0 HOH HOH . E 4 HOH A 114 309 0 HOH HOH . E 4 HOH A 115 311 0 HOH HOH . E 4 HOH A 116 314 0 HOH HOH . E 4 HOH A 117 315 0 HOH HOH . E 4 HOH A 118 317 0 HOH HOH . E 4 HOH A 119 321 0 HOH HOH . E 4 HOH A 120 330 0 HOH HOH . E 4 HOH A 121 331 0 HOH HOH . E 4 HOH A 122 333 0 HOH HOH . E 4 HOH A 123 334 0 HOH HOH . E 4 HOH A 124 335 0 HOH HOH . E 4 HOH A 125 336 0 HOH HOH . E 4 HOH A 126 337 0 HOH HOH . E 4 HOH A 127 341 0 HOH HOH . E 4 HOH A 128 343 0 HOH HOH . E 4 HOH A 129 347 0 HOH HOH . E 4 HOH A 130 349 0 HOH HOH . E 4 HOH A 131 351 0 HOH HOH . E 4 HOH A 132 352 0 HOH HOH . E 4 HOH A 133 354 0 HOH HOH . E 4 HOH A 134 358 0 HOH HOH . E 4 HOH A 135 360 0 HOH HOH . E 4 HOH A 136 362 0 HOH HOH . E 4 HOH A 137 368 0 HOH HOH . E 4 HOH A 138 369 0 HOH HOH . E 4 HOH A 139 374 0 HOH HOH . E 4 HOH A 140 376 0 HOH HOH . E 4 HOH A 141 383 0 HOH HOH . E 4 HOH A 142 386 0 HOH HOH . E 4 HOH A 143 388 0 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . D 3 31.693 -1.244 15.602 1 46.52 ? C1 HED 170 A 1 HETATM 2 O O1 HED . . . D 3 33.045 -0.897 15.886 1 44.61 ? O1 HED 170 A 1 HETATM 3 C C2 HED . . . D 3 31.503 -0.932 14.139 1 37.69 ? C2 HED 170 A 1 HETATM 4 S S3 HED . . . D 3 33.064 -1.227 13.278 1 75.46 ? S3 HED 170 A 1 HETATM 5 S S4 HED . . . D 3 32.643 -0.881 11.233 1 100 ? S4 HED 170 A 1 HETATM 6 C C5 HED . . . D 3 33.14 -2.355 10.286 1 100 ? C5 HED 170 A 1 HETATM 7 C C6 HED . . . D 3 34.412 -2.154 9.435 1 100 ? C6 HED 170 A 1 HETATM 8 O O6 HED . . . D 3 35.284 -3.271 9.6 1 100 ? O6 HED 170 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 8 #