data_1KWO # _model_server_result.job_id IdG0h98z9yaJZCkrTsZqSA _model_server_result.datetime_utc '2025-01-25 10:34:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kwo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":900}' # _entry.id 1KWO # _exptl.entry_id 1KWO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.287 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[4-(2,5-DIOXO-PYRROLIDIN-1-YL)-PHENYLAMINO]-4-HYDROXY-BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.16 _cell.angle_beta 96.45 _cell.angle_gamma 100.93 _cell.entry_id 1KWO _cell.length_a 51.816 _cell.length_b 57.028 _cell.length_c 151.708 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KWO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 693 A CYS 693 1_555 F CP9 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.864 ? covale ? covale2 A NZ LYS 705 A LYS 705 1_555 F C13 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.366 ? metalc ? metalc1 A OG1 THR 183 A THR 183 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc2 A OG SER 241 A SER 241 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc3 D MG MG . A MG 903 1_555 E O2G AGS . A AGS 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc4 D MG MG . A MG 903 1_555 E O1B AGS . A AGS 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc5 B O ASP 28 B ASP 28 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.112 ? metalc ? metalc6 B OD1 ASP 28 B ASP 28 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.722 ? metalc ? metalc7 B OD2 ASP 30 B ASP 30 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc8 B N ARG 31 B ARG 31 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc9 B OD1 ASP 32 B ASP 32 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc10 B N ASP 32 B ASP 32 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.825 ? metalc ? metalc11 B O PHE 34 B PHE 34 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc12 B OD1 ASP 39 B ASP 39 1_555 H MG MG . C MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc13 C O ASP 19 C ASP 19 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc14 C OD1 ASP 19 C ASP 19 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc15 C O ASP 22 C ASP 22 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.756 ? metalc ? metalc16 C OD1 ASP 22 C ASP 22 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc17 C O GLY 23 C GLY 23 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc18 C OD2 ASP 25 C ASP 25 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc19 C O ALA 27 C ALA 27 1_555 G CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc20 G CA CA . C CA 501 1_555 K O HOH . C HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.773 ? # _chem_comp.formula 'C14 H16 N2 O5' _chem_comp.formula_weight 292.287 _chem_comp.id PDM _chem_comp.mon_nstd_flag . _chem_comp.name '4-[4-(2,5-DIOXO-PYRROLIDIN-1-YL)-PHENYLAMINO]-4-HYDROXY-BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PARA-PHENYL DIMALEMIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CP1 CP2 PDM doub 286 n y CP1 CP6 PDM sing 287 n y CP1 NP1 PDM sing 288 n n CP2 CP3 PDM sing 289 n y CP2 HP2 PDM sing 290 n n CP3 CP4 PDM doub 291 n y CP3 HP3 PDM sing 292 n n CP4 CP5 PDM sing 293 n y CP4 NP2 PDM sing 294 n n CP5 CP6 PDM doub 295 n y CP5 HP5 PDM sing 296 n n CP6 HP6 PDM sing 297 n n CP7 CP8 PDM sing 298 n n CP7 NP2 PDM sing 299 n n CP7 OP3 PDM sing 300 n n CP7 HP7 PDM sing 301 n n CP8 CP9 PDM sing 302 n n CP8 HP81 PDM sing 303 n n CP8 HP82 PDM sing 304 n n CP9 C10 PDM sing 305 n n CP9 HP91 PDM sing 306 n n CP9 HP92 PDM sing 307 n n C10 OP4 PDM sing 308 n n C10 OP5 PDM doub 309 n n C11 NP1 PDM sing 310 n n C11 OP1 PDM doub 311 n n C11 C12 PDM sing 312 n n NP1 C14 PDM sing 313 n n NP2 HP2N PDM sing 314 n n OP2 C14 PDM doub 315 n n OP3 HP3O PDM sing 316 n n OP4 HP4O PDM sing 317 n n C12 C13 PDM sing 318 n n C12 H121 PDM sing 319 n n C12 H122 PDM sing 320 n n C14 C13 PDM sing 321 n n C13 H131 PDM sing 322 n n C13 H132 PDM sing 323 n n # _atom_sites.entry_id 1KWO _atom_sites.fract_transf_matrix[1][1] 0.019299 _atom_sites.fract_transf_matrix[1][2] 0.003725 _atom_sites.fract_transf_matrix[1][3] 0.002624 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017859 _atom_sites.fract_transf_matrix[2][3] 0.002049 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006677 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 903 503 MG MG . E 5 AGS A 1 999 999 AGS ATP . F 6 PDM A 1 900 693 PDM CYP . G 7 CA C 1 501 501 CA CA . H 4 MG C 1 902 502 MG MG . I 8 HOH A 1 1000 3 HOH WAT . I 8 HOH A 2 1001 4 HOH WAT . I 8 HOH A 3 1002 5 HOH WAT . J 8 HOH B 1 157 1 HOH WAT . K 8 HOH C 1 903 2 HOH WAT . K 8 HOH C 2 904 6 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CP1 PDM . . . F 6 10.19 -4.328 -10.438 1 90.27 ? CP1 PDM 900 A 1 HETATM 2 C CP2 PDM . . . F 6 10.691 -3.118 -10.915 1 93.3 ? CP2 PDM 900 A 1 HETATM 3 C CP3 PDM . . . F 6 9.936 -2.327 -11.787 1 94.6 ? CP3 PDM 900 A 1 HETATM 4 C CP4 PDM . . . F 6 8.671 -2.734 -12.193 1 93.94 ? CP4 PDM 900 A 1 HETATM 5 C CP5 PDM . . . F 6 8.199 -3.987 -11.73 1 94.71 ? CP5 PDM 900 A 1 HETATM 6 C CP6 PDM . . . F 6 9.011 -4.836 -10.936 1 95.5 ? CP6 PDM 900 A 1 HETATM 7 C CP7 PDM . . . F 6 8.192 -0.83 -13.761 1 103.31 ? CP7 PDM 900 A 1 HETATM 8 C CP8 PDM . . . F 6 8.664 -1.154 -15.201 1 104.78 ? CP8 PDM 900 A 1 HETATM 9 C CP9 PDM . . . F 6 9.946 -0.384 -15.599 1 101.88 ? CP9 PDM 900 A 1 HETATM 10 C C10 PDM . . . F 6 10.658 -1.008 -16.814 1 100.18 ? C10 PDM 900 A 1 HETATM 11 C C11 PDM . . . F 6 10.648 -6.455 -9.309 1 87.41 ? C11 PDM 900 A 1 HETATM 12 N NP1 PDM . . . F 6 11.007 -5.192 -9.623 1 90.25 ? NP1 PDM 900 A 1 HETATM 13 N NP2 PDM . . . F 6 7.882 -1.871 -12.976 1 93.62 ? NP2 PDM 900 A 1 HETATM 14 O OP1 PDM . . . F 6 9.504 -6.907 -9.356 1 91.32 ? OP1 PDM 900 A 1 HETATM 15 O OP2 PDM . . . F 6 12.882 -3.869 -9.545 1 103.17 ? OP2 PDM 900 A 1 HETATM 16 O OP3 PDM . . . F 6 8.216 0.328 -13.325 1 105.61 ? OP3 PDM 900 A 1 HETATM 17 O OP4 PDM . . . F 6 11.853 -1.349 -16.651 1 104.89 ? OP4 PDM 900 A 1 HETATM 18 O OP5 PDM . . . F 6 10.221 -0.654 -17.942 1 98.98 ? OP5 PDM 900 A 1 HETATM 19 C C12 PDM . . . F 6 11.806 -7.09 -8.848 1 91.75 ? C12 PDM 900 A 1 HETATM 20 C C14 PDM . . . F 6 12.31 -4.948 -9.375 1 99.75 ? C14 PDM 900 A 1 HETATM 21 C C13 PDM . . . F 6 12.85 -6.143 -8.894 1 101.74 ? C13 PDM 900 A 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 245 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #