data_1KXH # _model_server_result.job_id '_jGnjCAc9lysOGQgDAJc3Q' _model_server_result.datetime_utc '2025-03-31 11:07:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kxh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":800}' # _entry.id 1KXH # _exptl.entry_id 1KXH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KXH _cell.length_a 71.1 _cell.length_b 139.9 _cell.length_c 115.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KXH _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC GLC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 AC1 GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B GLC 1 B 1 GLC ? 600 GLC 2 n B GLC 2 B 2 GLC ? 599 GLC 2 n B AC1 3 B 3 AC1 ? 598 ACA # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 20 A CYS 20 1_555 A SG CYS 74 A CYS 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf2 A SG CYS 120 A CYS 120 1_555 A SG CYS 137 A CYS 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf3 A SG CYS 328 A CYS 328 1_555 A SG CYS 335 A CYS 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 A SG CYS 402 A CYS 402 1_555 A SG CYS 416 A CYS 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 B O4 GLC . B GLC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 sing covale ? covale2 B O4 GLC . B GLC 2 1_555 B C1 AC1 . B AC1 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.407 sing metalc ? metalc1 A OD1 ASN 88 A ASN 88 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc2 A O GLN 135 A GLN 135 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc3 A OD1 ASP 144 A ASP 144 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc4 A OD2 ASP 144 A ASP 144 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.596 ? metalc ? metalc5 A O HIS 178 A HIS 178 1_555 C CA CA . A CA 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.457 ? metalc ? metalc6 C CA CA . A CA 800 1_555 E O HOH . A HOH 1091 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc7 C CA CA . A CA 800 1_555 E O HOH . A HOH 1107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc8 C CA CA . A CA 800 1_555 E O HOH . A HOH 1108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1KXH _atom_sites.fract_transf_matrix[1][1] 0.014065 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008673 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 800 800 CA CAL . D 4 CL A 1 900 900 CL CLO . E 5 HOH A 1 1000 1000 HOH HOH . E 5 HOH A 2 1001 1001 HOH HOH . E 5 HOH A 3 1002 1002 HOH HOH . E 5 HOH A 4 1003 1003 HOH HOH . E 5 HOH A 5 1004 1004 HOH HOH . E 5 HOH A 6 1005 1005 HOH HOH . E 5 HOH A 7 1006 1006 HOH HOH . E 5 HOH A 8 1007 1007 HOH HOH . E 5 HOH A 9 1008 1008 HOH HOH . E 5 HOH A 10 1009 1009 HOH HOH . E 5 HOH A 11 1010 1010 HOH HOH . E 5 HOH A 12 1011 1011 HOH HOH . E 5 HOH A 13 1012 1012 HOH HOH . E 5 HOH A 14 1013 1013 HOH HOH . E 5 HOH A 15 1014 1014 HOH HOH . E 5 HOH A 16 1015 1015 HOH HOH . E 5 HOH A 17 1016 1016 HOH HOH . E 5 HOH A 18 1017 1017 HOH HOH . E 5 HOH A 19 1018 1018 HOH HOH . E 5 HOH A 20 1019 1019 HOH HOH . E 5 HOH A 21 1020 1020 HOH HOH . E 5 HOH A 22 1021 1021 HOH HOH . E 5 HOH A 23 1022 1022 HOH HOH . E 5 HOH A 24 1023 1023 HOH HOH . E 5 HOH A 25 1024 1024 HOH HOH . E 5 HOH A 26 1025 1025 HOH HOH . E 5 HOH A 27 1026 1026 HOH HOH . E 5 HOH A 28 1027 1027 HOH HOH . E 5 HOH A 29 1028 1028 HOH HOH . E 5 HOH A 30 1029 1029 HOH HOH . E 5 HOH A 31 1031 1031 HOH HOH . E 5 HOH A 32 1032 1032 HOH HOH . E 5 HOH A 33 1033 1033 HOH HOH . E 5 HOH A 34 1034 1034 HOH HOH . E 5 HOH A 35 1035 1035 HOH HOH . E 5 HOH A 36 1036 1036 HOH HOH . E 5 HOH A 37 1037 1037 HOH HOH . E 5 HOH A 38 1038 1038 HOH HOH . E 5 HOH A 39 1039 1039 HOH HOH . E 5 HOH A 40 1040 1040 HOH HOH . E 5 HOH A 41 1041 1041 HOH HOH . E 5 HOH A 42 1042 1042 HOH HOH . E 5 HOH A 43 1043 1043 HOH HOH . E 5 HOH A 44 1044 1044 HOH HOH . E 5 HOH A 45 1045 1045 HOH HOH . E 5 HOH A 46 1047 1047 HOH HOH . E 5 HOH A 47 1049 1049 HOH HOH . E 5 HOH A 48 1050 1050 HOH HOH . E 5 HOH A 49 1051 1051 HOH HOH . E 5 HOH A 50 1052 1052 HOH HOH . E 5 HOH A 51 1053 1053 HOH HOH . E 5 HOH A 52 1054 1054 HOH HOH . E 5 HOH A 53 1055 1055 HOH HOH . E 5 HOH A 54 1056 1056 HOH HOH . E 5 HOH A 55 1057 1057 HOH HOH . E 5 HOH A 56 1059 1059 HOH HOH . E 5 HOH A 57 1060 1060 HOH HOH . E 5 HOH A 58 1061 1061 HOH HOH . E 5 HOH A 59 1062 1062 HOH HOH . E 5 HOH A 60 1063 1063 HOH HOH . E 5 HOH A 61 1064 1064 HOH HOH . E 5 HOH A 62 1065 1065 HOH HOH . E 5 HOH A 63 1066 1066 HOH HOH . E 5 HOH A 64 1067 1067 HOH HOH . E 5 HOH A 65 1068 1068 HOH HOH . E 5 HOH A 66 1069 1069 HOH HOH . E 5 HOH A 67 1070 1070 HOH HOH . E 5 HOH A 68 1073 1073 HOH HOH . E 5 HOH A 69 1074 1074 HOH HOH . E 5 HOH A 70 1075 1075 HOH HOH . E 5 HOH A 71 1077 1077 HOH HOH . E 5 HOH A 72 1078 1078 HOH HOH . E 5 HOH A 73 1079 1079 HOH HOH . E 5 HOH A 74 1080 1080 HOH HOH . E 5 HOH A 75 1081 1081 HOH HOH . E 5 HOH A 76 1084 1084 HOH HOH . E 5 HOH A 77 1085 1085 HOH HOH . E 5 HOH A 78 1086 1086 HOH HOH . E 5 HOH A 79 1087 1087 HOH HOH . E 5 HOH A 80 1088 1088 HOH HOH . E 5 HOH A 81 1089 1089 HOH HOH . E 5 HOH A 82 1090 1090 HOH HOH . E 5 HOH A 83 1091 1091 HOH HOH . E 5 HOH A 84 1092 1092 HOH HOH . E 5 HOH A 85 1093 1093 HOH HOH . E 5 HOH A 86 1094 1094 HOH HOH . E 5 HOH A 87 1095 1095 HOH HOH . E 5 HOH A 88 1096 1096 HOH HOH . E 5 HOH A 89 1097 1097 HOH HOH . E 5 HOH A 90 1098 1098 HOH HOH . E 5 HOH A 91 1099 1099 HOH HOH . E 5 HOH A 92 1100 1100 HOH HOH . E 5 HOH A 93 1101 1101 HOH HOH . E 5 HOH A 94 1102 1102 HOH HOH . E 5 HOH A 95 1105 1105 HOH HOH . E 5 HOH A 96 1106 1106 HOH HOH . E 5 HOH A 97 1107 1107 HOH HOH . E 5 HOH A 98 1108 1108 HOH HOH . E 5 HOH A 99 1109 1109 HOH HOH . E 5 HOH A 100 1110 1110 HOH HOH . E 5 HOH A 101 1111 1111 HOH HOH . E 5 HOH A 102 1112 1112 HOH HOH . E 5 HOH A 103 1113 1113 HOH HOH . E 5 HOH A 104 1114 1114 HOH HOH . E 5 HOH A 105 1115 1115 HOH HOH . E 5 HOH A 106 1117 1117 HOH HOH . E 5 HOH A 107 1118 1118 HOH HOH . E 5 HOH A 108 1119 1119 HOH HOH . E 5 HOH A 109 1120 1120 HOH HOH . E 5 HOH A 110 1121 1121 HOH HOH . E 5 HOH A 111 1122 1122 HOH HOH . E 5 HOH A 112 1123 1123 HOH HOH . E 5 HOH A 113 1124 1124 HOH HOH . E 5 HOH A 114 1126 1126 HOH HOH . E 5 HOH A 115 1127 1127 HOH HOH . E 5 HOH A 116 1128 1128 HOH HOH . E 5 HOH A 117 1129 1129 HOH HOH . E 5 HOH A 118 1131 1131 HOH HOH . E 5 HOH A 119 1132 1132 HOH HOH . E 5 HOH A 120 1133 1133 HOH HOH . E 5 HOH A 121 1134 1134 HOH HOH . E 5 HOH A 122 1136 1136 HOH HOH . E 5 HOH A 123 1138 1138 HOH HOH . E 5 HOH A 124 1141 1141 HOH HOH . E 5 HOH A 125 1142 1142 HOH HOH . E 5 HOH A 126 1144 1144 HOH HOH . E 5 HOH A 127 1145 1145 HOH HOH . E 5 HOH A 128 1151 1151 HOH HOH . E 5 HOH A 129 1152 1152 HOH HOH . E 5 HOH A 130 1154 1154 HOH HOH . E 5 HOH A 131 1156 1156 HOH HOH . E 5 HOH A 132 1159 1159 HOH HOH . E 5 HOH A 133 1161 1161 HOH HOH . E 5 HOH A 134 1165 1165 HOH HOH . E 5 HOH A 135 1175 1175 HOH HOH . E 5 HOH A 136 1176 1176 HOH HOH . E 5 HOH A 137 1178 1178 HOH HOH . E 5 HOH A 138 1179 1179 HOH HOH . E 5 HOH A 139 1180 1180 HOH HOH . E 5 HOH A 140 1181 1181 HOH HOH . E 5 HOH A 141 1184 1184 HOH HOH . E 5 HOH A 142 1185 1185 HOH HOH . E 5 HOH A 143 1186 1186 HOH HOH . E 5 HOH A 144 1187 1187 HOH HOH . E 5 HOH A 145 1189 1189 HOH HOH . E 5 HOH A 146 1192 1192 HOH HOH . E 5 HOH A 147 1194 1194 HOH HOH . E 5 HOH A 148 1195 1195 HOH HOH . E 5 HOH A 149 1198 1198 HOH HOH . E 5 HOH A 150 1199 1199 HOH HOH . E 5 HOH A 151 1200 1200 HOH HOH . E 5 HOH A 152 1201 1201 HOH HOH . E 5 HOH A 153 1202 1202 HOH HOH . E 5 HOH A 154 1207 1207 HOH HOH . E 5 HOH A 155 1209 1209 HOH HOH . E 5 HOH A 156 1211 1211 HOH HOH . E 5 HOH A 157 1213 1213 HOH HOH . E 5 HOH A 158 1215 1215 HOH HOH . E 5 HOH A 159 1219 1219 HOH HOH . E 5 HOH A 160 1220 1220 HOH HOH . E 5 HOH A 161 1221 1221 HOH HOH . E 5 HOH A 162 1269 1269 HOH HOH . E 5 HOH A 163 1270 1270 HOH HOH . E 5 HOH A 164 1271 1271 HOH HOH . E 5 HOH A 165 1273 1273 HOH HOH . E 5 HOH A 166 1276 1276 HOH HOH . E 5 HOH A 167 1279 1279 HOH HOH . E 5 HOH A 168 1288 1288 HOH HOH . E 5 HOH A 169 1289 1289 HOH HOH . E 5 HOH A 170 1297 1297 HOH HOH . E 5 HOH A 171 1298 1298 HOH HOH . E 5 HOH A 172 1301 1301 HOH HOH . E 5 HOH A 173 1304 1304 HOH HOH . E 5 HOH A 174 1309 1309 HOH HOH . E 5 HOH A 175 1311 1311 HOH HOH . E 5 HOH A 176 1314 1314 HOH HOH . E 5 HOH A 177 1318 1318 HOH HOH . E 5 HOH A 178 1321 1321 HOH HOH . E 5 HOH A 179 1323 1323 HOH HOH . E 5 HOH A 180 1324 1324 HOH HOH . E 5 HOH A 181 1325 1325 HOH HOH . E 5 HOH A 182 1329 1329 HOH HOH . E 5 HOH A 183 1330 1330 HOH HOH . E 5 HOH A 184 1331 1331 HOH HOH . E 5 HOH A 185 1333 1333 HOH HOH . E 5 HOH A 186 1334 1334 HOH HOH . E 5 HOH A 187 1335 1335 HOH HOH . E 5 HOH A 188 1347 1347 HOH HOH . E 5 HOH A 189 1349 1349 HOH HOH . E 5 HOH A 190 1367 1367 HOH HOH . E 5 HOH A 191 1371 1371 HOH HOH . E 5 HOH A 192 1372 1372 HOH HOH . E 5 HOH A 193 1373 1373 HOH HOH . E 5 HOH A 194 1374 1374 HOH HOH . E 5 HOH A 195 1375 1375 HOH HOH . E 5 HOH A 196 1376 1376 HOH HOH . E 5 HOH A 197 1377 1377 HOH HOH . E 5 HOH A 198 1378 1378 HOH HOH . E 5 HOH A 199 1379 1379 HOH HOH . E 5 HOH A 200 1380 1380 HOH HOH . E 5 HOH A 201 1381 1381 HOH HOH . E 5 HOH A 202 1382 1382 HOH HOH . E 5 HOH A 203 1383 1383 HOH HOH . E 5 HOH A 204 1384 1384 HOH HOH . E 5 HOH A 205 1385 1385 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 20.169 _atom_site.Cartn_y 35.411 _atom_site.Cartn_z -6.019 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 800 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 1 #