data_1KY0 # _model_server_result.job_id gOGqlRGt8_DgFyIWDcj3oQ _model_server_result.datetime_utc '2024-10-13 06:28:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ky0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":170}' # _entry.id 1KY0 # _exptl.entry_id 1KY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 154.251 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-HYDROXYETHYL DISULFIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1KY0 _cell.length_a 61.3 _cell.length_b 61.3 _cell.length_c 96.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C4 H10 O2 S2' _chem_comp.formula_weight 154.251 _chem_comp.id HED _chem_comp.mon_nstd_flag . _chem_comp.name '2-HYDROXYETHYL DISULFIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 HED sing 129 n n C1 C2 HED sing 130 n n C1 H11 HED sing 131 n n C1 H12 HED sing 132 n n O1 HO1 HED sing 133 n n C2 S3 HED sing 134 n n C2 H21 HED sing 135 n n C2 H22 HED sing 136 n n S3 S4 HED sing 137 n n S4 C5 HED sing 138 n n C5 C6 HED sing 139 n n C5 H51 HED sing 140 n n C5 H52 HED sing 141 n n C6 O6 HED sing 142 n n C6 H61 HED sing 143 n n C6 H62 HED sing 144 n n O6 HO6 HED sing 145 n n # _atom_sites.entry_id 1KY0 _atom_sites.fract_transf_matrix[1][1] 0.016308 _atom_sites.fract_transf_matrix[1][2] 0.009415 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010366 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 173 0 CL CL . C 2 CL A 1 178 0 CL CL . D 3 HED A 1 170 0 HED HED . E 4 HOH A 1 171 0 HOH HOH . E 4 HOH A 2 172 0 HOH HOH . E 4 HOH A 3 174 0 HOH HOH . E 4 HOH A 4 175 0 HOH HOH . E 4 HOH A 5 177 0 HOH HOH . E 4 HOH A 6 179 0 HOH HOH . E 4 HOH A 7 180 0 HOH HOH . E 4 HOH A 8 181 0 HOH HOH . E 4 HOH A 9 182 0 HOH HOH . E 4 HOH A 10 183 0 HOH HOH . E 4 HOH A 11 184 0 HOH HOH . E 4 HOH A 12 185 0 HOH HOH . E 4 HOH A 13 186 0 HOH HOH . E 4 HOH A 14 187 0 HOH HOH . E 4 HOH A 15 188 0 HOH HOH . E 4 HOH A 16 189 0 HOH HOH . E 4 HOH A 17 190 0 HOH HOH . E 4 HOH A 18 191 0 HOH HOH . E 4 HOH A 19 192 0 HOH HOH . E 4 HOH A 20 193 0 HOH HOH . E 4 HOH A 21 194 0 HOH HOH . E 4 HOH A 22 195 0 HOH HOH . E 4 HOH A 23 196 0 HOH HOH . E 4 HOH A 24 197 0 HOH HOH . E 4 HOH A 25 198 0 HOH HOH . E 4 HOH A 26 200 0 HOH HOH . E 4 HOH A 27 201 0 HOH HOH . E 4 HOH A 28 202 0 HOH HOH . E 4 HOH A 29 203 0 HOH HOH . E 4 HOH A 30 204 0 HOH HOH . E 4 HOH A 31 206 0 HOH HOH . E 4 HOH A 32 207 0 HOH HOH . E 4 HOH A 33 208 0 HOH HOH . E 4 HOH A 34 209 0 HOH HOH . E 4 HOH A 35 210 0 HOH HOH . E 4 HOH A 36 211 0 HOH HOH . E 4 HOH A 37 213 0 HOH HOH . E 4 HOH A 38 214 0 HOH HOH . E 4 HOH A 39 215 0 HOH HOH . E 4 HOH A 40 216 0 HOH HOH . E 4 HOH A 41 217 0 HOH HOH . E 4 HOH A 42 218 0 HOH HOH . E 4 HOH A 43 219 0 HOH HOH . E 4 HOH A 44 220 0 HOH HOH . E 4 HOH A 45 221 0 HOH HOH . E 4 HOH A 46 222 0 HOH HOH . E 4 HOH A 47 223 0 HOH HOH . E 4 HOH A 48 224 0 HOH HOH . E 4 HOH A 49 225 0 HOH HOH . E 4 HOH A 50 226 0 HOH HOH . E 4 HOH A 51 227 0 HOH HOH . E 4 HOH A 52 229 0 HOH HOH . E 4 HOH A 53 230 0 HOH HOH . E 4 HOH A 54 231 0 HOH HOH . E 4 HOH A 55 235 0 HOH HOH . E 4 HOH A 56 236 0 HOH HOH . E 4 HOH A 57 237 0 HOH HOH . E 4 HOH A 58 238 0 HOH HOH . E 4 HOH A 59 239 0 HOH HOH . E 4 HOH A 60 240 0 HOH HOH . E 4 HOH A 61 242 0 HOH HOH . E 4 HOH A 62 244 0 HOH HOH . E 4 HOH A 63 245 0 HOH HOH . E 4 HOH A 64 246 0 HOH HOH . E 4 HOH A 65 247 0 HOH HOH . E 4 HOH A 66 248 0 HOH HOH . E 4 HOH A 67 249 0 HOH HOH . E 4 HOH A 68 250 0 HOH HOH . E 4 HOH A 69 251 0 HOH HOH . E 4 HOH A 70 253 0 HOH HOH . E 4 HOH A 71 254 0 HOH HOH . E 4 HOH A 72 256 0 HOH HOH . E 4 HOH A 73 257 0 HOH HOH . E 4 HOH A 74 259 0 HOH HOH . E 4 HOH A 75 260 0 HOH HOH . E 4 HOH A 76 261 0 HOH HOH . E 4 HOH A 77 266 0 HOH HOH . E 4 HOH A 78 267 0 HOH HOH . E 4 HOH A 79 268 0 HOH HOH . E 4 HOH A 80 269 0 HOH HOH . E 4 HOH A 81 270 0 HOH HOH . E 4 HOH A 82 271 0 HOH HOH . E 4 HOH A 83 272 0 HOH HOH . E 4 HOH A 84 273 0 HOH HOH . E 4 HOH A 85 274 0 HOH HOH . E 4 HOH A 86 277 0 HOH HOH . E 4 HOH A 87 278 0 HOH HOH . E 4 HOH A 88 279 0 HOH HOH . E 4 HOH A 89 280 0 HOH HOH . E 4 HOH A 90 281 0 HOH HOH . E 4 HOH A 91 282 0 HOH HOH . E 4 HOH A 92 283 0 HOH HOH . E 4 HOH A 93 284 0 HOH HOH . E 4 HOH A 94 285 0 HOH HOH . E 4 HOH A 95 288 0 HOH HOH . E 4 HOH A 96 291 0 HOH HOH . E 4 HOH A 97 292 0 HOH HOH . E 4 HOH A 98 293 0 HOH HOH . E 4 HOH A 99 294 0 HOH HOH . E 4 HOH A 100 295 0 HOH HOH . E 4 HOH A 101 296 0 HOH HOH . E 4 HOH A 102 298 0 HOH HOH . E 4 HOH A 103 299 0 HOH HOH . E 4 HOH A 104 300 0 HOH HOH . E 4 HOH A 105 301 0 HOH HOH . E 4 HOH A 106 302 0 HOH HOH . E 4 HOH A 107 303 0 HOH HOH . E 4 HOH A 108 304 0 HOH HOH . E 4 HOH A 109 306 0 HOH HOH . E 4 HOH A 110 307 0 HOH HOH . E 4 HOH A 111 308 0 HOH HOH . E 4 HOH A 112 311 0 HOH HOH . E 4 HOH A 113 313 0 HOH HOH . E 4 HOH A 114 314 0 HOH HOH . E 4 HOH A 115 321 0 HOH HOH . E 4 HOH A 116 330 0 HOH HOH . E 4 HOH A 117 331 0 HOH HOH . E 4 HOH A 118 333 0 HOH HOH . E 4 HOH A 119 334 0 HOH HOH . E 4 HOH A 120 335 0 HOH HOH . E 4 HOH A 121 337 0 HOH HOH . E 4 HOH A 122 339 0 HOH HOH . E 4 HOH A 123 340 0 HOH HOH . E 4 HOH A 124 341 0 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HED . . . D 3 32.038 -1.396 15.055 1 19.96 ? C1 HED 170 A 1 HETATM 2 O O1 HED . . . D 3 33.099 -0.712 15.721 1 41.97 ? O1 HED 170 A 1 HETATM 3 C C2 HED . . . D 3 31.957 -0.845 13.648 1 30.72 ? C2 HED 170 A 1 HETATM 4 S S3 HED . . . D 3 33.454 -1.19 12.687 1 76.43 ? S3 HED 170 A 1 HETATM 5 S S4 HED . . . D 3 32.865 -0.999 10.646 1 100 ? S4 HED 170 A 1 HETATM 6 C C5 HED . . . D 3 33.892 -2.079 9.571 1 41.91 ? C5 HED 170 A 1 HETATM 7 C C6 HED . . . D 3 33.598 -3.594 9.739 1 100 ? C6 HED 170 A 1 HETATM 8 O O6 HED . . . D 3 34.735 -4.258 10.259 1 81.64 ? O6 HED 170 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 8 #