data_1KYN
#
_model_server_result.job_id            FrwWG9Qmz2N3YObnXMaipg 
_model_server_result.datetime_utc      '2024-11-26 22:06:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kyn 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":701}' 
#
_entry.id    1KYN 
#
_exptl.entry_id    1KYN 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              376.342 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2-NAPHTHALEN-2-YL-1-NAPHTHALEN-1-YL-2-OXO-ETHYL)-PHOSPHONIC ACID' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KYN 
_cell.length_a            59.44 
_cell.length_b            59.44 
_cell.length_c            130.62 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1KYN 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        76 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C 1 1 
B,D 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 29 A CYS 42 1_555 A SG CYS 45 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 122 A CYS 136 1_555 A SG CYS 187 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf3 A SG CYS 152 A CYS 168 1_555 A SG CYS 166 A CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 29 B CYS 342 1_555 B SG CYS 45 B CYS 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf5 B SG CYS 122 B CYS 436 1_555 B SG CYS 187 B CYS 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf6 B SG CYS 152 B CYS 468 1_555 B SG CYS 166 B CYS 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C22 H17 O4 P' 
_chem_comp.formula_weight    376.342 
_chem_comp.id                KTP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2-NAPHTHALEN-2-YL-1-NAPHTHALEN-1-YL-2-OXO-ETHYL)-PHOSPHONIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'BIS-NAPTHYL BETA-KETOPHOSPHONIC ACID' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1 KTP doub 171 n n 
P1 C1 KTP sing 172 n n 
P1 O3 KTP sing 173 n n 
P1 O4 KTP sing 174 n n 
O2 C2 KTP doub 175 n n 
C1 C2 KTP sing 176 n n 
C1 C14 KTP sing 177 n n 
C1 HC1 KTP sing 178 n n 
C2 C3 KTP sing 179 n n 
O3 HO3 KTP sing 180 n n 
O4 HO4 KTP sing 181 n n 
C3 C4 KTP doub 182 n y 
C3 C12 KTP sing 183 n y 
C4 C5 KTP sing 184 n y 
C4 HC4 KTP sing 185 n n 
C5 C6 KTP doub 186 n y 
C5 C10 KTP sing 187 n y 
C6 C7 KTP sing 188 n y 
C6 HC6 KTP sing 189 n n 
C7 C8 KTP doub 190 n y 
C7 HC7 KTP sing 191 n n 
C8 C9 KTP sing 192 n y 
C8 HC8 KTP sing 193 n n 
C9 C10 KTP doub 194 n y 
C9 HC9 KTP sing 195 n n 
C10 C11 KTP sing 196 n y 
C11 C12 KTP doub 197 n y 
C11 HC11 KTP sing 198 n n 
C12 HC12 KTP sing 199 n n 
C13 C14 KTP doub 200 n y 
C13 C22 KTP sing 201 n y 
C13 HC13 KTP sing 202 n n 
C14 C15 KTP sing 203 n y 
C15 C16 KTP doub 204 n y 
C15 C20 KTP sing 205 n y 
C16 C17 KTP sing 206 n y 
C16 HC16 KTP sing 207 n n 
C17 C18 KTP doub 208 n y 
C17 HC17 KTP sing 209 n n 
C18 C19 KTP sing 210 n y 
C18 HC18 KTP sing 211 n n 
C19 C20 KTP doub 212 n y 
C19 HC19 KTP sing 213 n n 
C20 C21 KTP sing 214 n y 
C21 C22 KTP doub 215 n y 
C21 HC21 KTP sing 216 n n 
C22 HC22 KTP sing 217 n n 
#
_atom_sites.entry_id                     1KYN 
_atom_sites.fract_transf_matrix[1][1]    0.016824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016824 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007656 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 KTP A 1 601 601 KTP INH . 
D 2 KTP B 1 701 701 KTP INH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 KTP . . . D 2 58.423 0.42 11.18 1 26 ? P1 KTP 701 B 1 
HETATM 2 O O1 KTP . . . D 2 58.506 -0.95 11.701 1 26 ? O1 KTP 701 B 1 
HETATM 3 O O2 KTP . . . D 2 56.194 -0.236 7.891 1 26 ? O2 KTP 701 B 1 
HETATM 4 C C1 KTP . . . D 2 57.647 1.035 9.543 1 26 ? C1 KTP 701 B 1 
HETATM 5 C C2 KTP . . . D 2 56.124 0.554 8.757 1 26 ? C2 KTP 701 B 1 
HETATM 6 O O3 KTP . . . D 2 58.527 1.454 12.422 1 26 ? O3 KTP 701 B 1 
HETATM 7 O O4 KTP . . . D 2 56.897 0.171 11.618 1 26 ? O4 KTP 701 B 1 
HETATM 8 C C3 KTP . . . D 2 54.598 0.848 8.832 1 26 ? C3 KTP 701 B 1 
HETATM 9 C C4 KTP . . . D 2 54.061 1.758 9.762 1 26 ? C4 KTP 701 B 1 
HETATM 10 C C5 KTP . . . D 2 52.67 2.008 9.814 1 26 ? C5 KTP 701 B 1 
HETATM 11 C C6 KTP . . . D 2 52.143 2.922 10.743 1 26 ? C6 KTP 701 B 1 
HETATM 12 C C7 KTP . . . D 2 50.753 3.159 10.783 1 26 ? C7 KTP 701 B 1 
HETATM 13 C C8 KTP . . . D 2 49.872 2.469 9.882 1 26 ? C8 KTP 701 B 1 
HETATM 14 C C9 KTP . . . D 2 50.386 1.543 8.936 1 26 ? C9 KTP 701 B 1 
HETATM 15 C C10 KTP . . . D 2 51.762 1.306 8.892 1 26 ? C10 KTP 701 B 1 
HETATM 16 C C11 KTP . . . D 2 52.278 0.404 7.974 1 26 ? C11 KTP 701 B 1 
HETATM 17 C C12 KTP . . . D 2 53.668 0.179 7.943 1 26 ? C12 KTP 701 B 1 
HETATM 18 C C13 KTP . . . D 2 58.587 3.1 8.395 1 26 ? C13 KTP 701 B 1 
HETATM 19 C C14 KTP . . . D 2 57.861 2.62 9.504 1 26 ? C14 KTP 701 B 1 
HETATM 20 C C15 KTP . . . D 2 57.384 3.645 10.499 1 26 ? C15 KTP 701 B 1 
HETATM 21 C C16 KTP . . . D 2 56.643 3.326 11.661 1 26 ? C16 KTP 701 B 1 
HETATM 22 C C17 KTP . . . D 2 56.226 4.35 12.573 1 26 ? C17 KTP 701 B 1 
HETATM 23 C C18 KTP . . . D 2 56.551 5.719 12.325 1 26 ? C18 KTP 701 B 1 
HETATM 24 C C19 KTP . . . D 2 57.293 6.076 11.16 1 26 ? C19 KTP 701 B 1 
HETATM 25 C C20 KTP . . . D 2 57.709 5.077 10.254 1 26 ? C20 KTP 701 B 1 
HETATM 26 C C21 KTP . . . D 2 58.44 5.452 9.12 1 26 ? C21 KTP 701 B 1 
HETATM 27 C C22 KTP . . . D 2 58.875 4.473 8.193 1 26 ? C22 KTP 701 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           615 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           27 
#