data_1KYO # _model_server_result.job_id '_t88Ecl4GXy1ocn2ZtmfGQ' _model_server_result.datetime_utc '2024-12-21 15:05:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kyo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"BA","auth_seq_id":504}' # _entry.id 1KYO # _exptl.entry_id 1KYO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.82 _entity.id 15 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE2/S2 (INORGANIC) CLUSTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.19 _cell.angle_gamma 90 _cell.entry_id 1KYO _cell.length_a 147.224 _cell.length_b 165.531 _cell.length_c 195.889 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KYO _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 23-meric _pdbx_struct_assembly.oligomeric_count 23 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 15 BA N N ? 15 GA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 134 E CYS 164 1_555 E SG CYS 150 E CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 F SG CYS 28 F CYS 101 1_555 F SG CYS 50 F CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf3 J SG CYS 22 J CYS 22 1_555 J SG CYS 96 J CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 K SG CYS 23 K CYS 23 1_555 K SG CYS 88 K CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf5 P SG CYS 134 P CYS 164 1_555 P SG CYS 150 P CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 Q SG CYS 28 Q CYS 101 1_555 Q SG CYS 50 Q CYS 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 U SG CYS 22 U CYS 22 1_555 U SG CYS 96 U CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf8 V SG CYS 23 V CYS 23 1_555 V SG CYS 88 V CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? covale ? covale1 D SG CYS 40 D CYS 101 1_555 AA CAB HEC . D HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? covale ? covale2 D SG CYS 43 D CYS 104 1_555 AA CAC HEC . D HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.766 ? covale ? covale3 O SG CYS 40 O CYS 101 1_555 FA CAB HEC . O HEC 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 ? covale ? covale4 O SG CYS 43 O CYS 104 1_555 FA CAC HEC . O HEC 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.832 ? covale ? covale5 W SG CYS 19 W CYS 19 1_555 HA CAB HEC . W HEC 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.803 ? covale ? covale6 W SG CYS 22 W CYS 22 1_555 HA CAC HEC . W HEC 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale7 W C PRO 76 W PRO 76 1_555 W N M3L 77 W M3L 77 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale8 W C M3L 77 W M3L 77 1_555 W N LYS 78 W LYS 78 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 C NE2 HIS 82 C HIS 82 1_555 X FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc2 C NE2 HIS 96 C HIS 96 1_555 Y FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 X FE HEC . C HEC 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 Y FE HEC . C HEC 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc5 D NE2 HIS 44 D HIS 105 1_555 AA FE HEC . D HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? metalc ? metalc6 D SD MET 164 D MET 225 1_555 AA FE HEC . D HEC 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc7 E SG CYS 129 E CYS 159 1_555 BA FE1 FES . E FES 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc8 E ND1 HIS 131 E HIS 161 1_555 BA FE2 FES . E FES 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? metalc ? metalc9 E SG CYS 148 E CYS 178 1_555 BA FE1 FES . E FES 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc10 E ND1 HIS 151 E HIS 181 1_555 BA FE2 FES . E FES 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc11 N NE2 HIS 82 N HIS 82 1_555 CA FE HEC . N HEC 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? metalc ? metalc12 N NE2 HIS 96 N HIS 96 1_555 DA FE HEC . N HEC 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc13 N NE2 HIS 183 N HIS 183 1_555 CA FE HEC . N HEC 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc14 N NE2 HIS 197 N HIS 197 1_555 DA FE HEC . N HEC 522 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc15 O NE2 HIS 44 O HIS 105 1_555 FA FE HEC . O HEC 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.963 ? metalc ? metalc16 O SD MET 164 O MET 225 1_555 FA FE HEC . O HEC 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc17 P SG CYS 129 P CYS 159 1_555 GA FE1 FES . P FES 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc18 P ND1 HIS 131 P HIS 161 1_555 GA FE2 FES . P FES 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc19 P SG CYS 148 P CYS 178 1_555 GA FE1 FES . P FES 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc20 P ND1 HIS 151 P HIS 181 1_555 GA FE2 FES . P FES 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc21 W NE2 HIS 23 W HIS 23 1_555 HA FE HEC . W HEC 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc22 W SD MET 85 W MET 85 1_555 HA FE HEC . W HEC 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? # _chem_comp.formula 'Fe2 S2' _chem_comp.formula_weight 175.82 _chem_comp.id FES _chem_comp.mon_nstd_flag . _chem_comp.name 'FE2/S2 (INORGANIC) CLUSTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE1 S1 FES sing 83 n n FE1 S2 FES sing 84 n n FE2 S1 FES sing 85 n n FE2 S2 FES sing 86 n n # _atom_sites.entry_id 1KYO _atom_sites.fract_transf_matrix[1][1] 0.006792 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001718 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006041 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005266 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code X 13 HEC C 1 501 1 HEC HEM . Y 13 HEC C 1 502 2 HEC HEM . Z 14 SMA C 1 505 5 SMA STG . AA 13 HEC D 1 503 3 HEC HEM . BA 15 FES E 1 504 4 FES FES . CA 13 HEC N 1 521 21 HEC HEM . DA 13 HEC N 1 522 22 HEC HEM . EA 14 SMA N 1 525 25 SMA STG . FA 13 HEC O 1 523 23 HEC HEM . GA 15 FES P 1 524 24 FES FES . HA 13 HEC W 1 526 26 HEC HEM . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE1 FES . . . BA 15 39.872 -33.23 20.332 1 24.1 ? FE1 FES 504 E 1 HETATM 2 FE FE2 FES . . . BA 15 39.393 -30.324 20.629 1 22.44 ? FE2 FES 504 E 1 HETATM 3 S S1 FES . . . BA 15 39.867 -31.581 18.948 1 23.02 ? S1 FES 504 E 1 HETATM 4 S S2 FES . . . BA 15 39.404 -32.018 22.013 1 21.51 ? S2 FES 504 E 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 96 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 4 #