data_1KYV
#
_model_server_result.job_id            i6Mox0iiddAUB7h4tUT3xw 
_model_server_result.datetime_utc      '2024-12-26 22:13:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1kyv 
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_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1005}' 
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_entry.id    1KYV 
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_exptl.entry_id    1KYV 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
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_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1KYV 
_cell.length_a            111.5 
_cell.length_b            145.523 
_cell.length_c            128.702 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 1KYV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
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loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA pentameric 5 author_and_software_defined_assembly 1 
PISA decameric 10 software_defined_assembly 2 
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loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 2 1,2 
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loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.5 0 64.351 
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loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
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_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
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loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 247 n n 
P O2 PO4 sing 248 n n 
P O3 PO4 sing 249 n n 
P O4 PO4 sing 250 n n 
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_atom_sites.entry_id                     1KYV 
_atom_sites.fract_transf_matrix[1][1]    0.008969 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006872 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00777 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 PO4 A 1 1004 4 PO4 PO4 . 
G 3 RBF A 1 501 1 RBF RBF . 
H 2 PO4 B 1 1001 1 PO4 PO4 . 
I 3 RBF B 1 502 2 RBF RBF . 
J 2 PO4 C 1 1003 3 PO4 PO4 . 
K 3 RBF C 1 503 3 RBF RBF . 
L 2 PO4 D 1 1005 5 PO4 PO4 . 
M 3 RBF D 1 504 4 RBF RBF . 
N 2 PO4 E 1 1002 2 PO4 PO4 . 
O 3 RBF E 1 505 5 RBF RBF . 
P 4 HOH A 1 1005 1 HOH HOH . 
P 4 HOH A 2 1006 4 HOH HOH . 
P 4 HOH A 3 1007 8 HOH HOH . 
P 4 HOH A 4 1008 12 HOH HOH . 
P 4 HOH A 5 1009 20 HOH HOH . 
P 4 HOH A 6 1010 30 HOH HOH . 
P 4 HOH A 7 1011 37 HOH HOH . 
P 4 HOH A 8 1012 40 HOH HOH . 
P 4 HOH A 9 1013 44 HOH HOH . 
P 4 HOH A 10 1014 45 HOH HOH . 
P 4 HOH A 11 1015 46 HOH HOH . 
P 4 HOH A 12 1016 48 HOH HOH . 
P 4 HOH A 13 1017 49 HOH HOH . 
P 4 HOH A 14 1018 50 HOH HOH . 
P 4 HOH A 15 1019 51 HOH HOH . 
P 4 HOH A 16 1020 52 HOH HOH . 
P 4 HOH A 17 1021 53 HOH HOH . 
P 4 HOH A 18 1022 54 HOH HOH . 
P 4 HOH A 19 1023 57 HOH HOH . 
P 4 HOH A 20 1024 58 HOH HOH . 
P 4 HOH A 21 1025 59 HOH HOH . 
P 4 HOH A 22 1026 62 HOH HOH . 
P 4 HOH A 23 1027 94 HOH HOH . 
Q 4 HOH B 1 1002 2 HOH HOH . 
Q 4 HOH B 2 1003 10 HOH HOH . 
Q 4 HOH B 3 1004 16 HOH HOH . 
Q 4 HOH B 4 1005 22 HOH HOH . 
Q 4 HOH B 5 1006 33 HOH HOH . 
Q 4 HOH B 6 1007 38 HOH HOH . 
Q 4 HOH B 7 1008 42 HOH HOH . 
Q 4 HOH B 8 1009 55 HOH HOH . 
Q 4 HOH B 9 1010 56 HOH HOH . 
Q 4 HOH B 10 1011 60 HOH HOH . 
Q 4 HOH B 11 1012 61 HOH HOH . 
Q 4 HOH B 12 1013 63 HOH HOH . 
Q 4 HOH B 13 1014 64 HOH HOH . 
Q 4 HOH B 14 1015 65 HOH HOH . 
Q 4 HOH B 15 1016 69 HOH HOH . 
Q 4 HOH B 16 1017 70 HOH HOH . 
R 4 HOH C 1 1004 3 HOH HOH . 
R 4 HOH C 2 1005 7 HOH HOH . 
R 4 HOH C 3 1006 13 HOH HOH . 
R 4 HOH C 4 1007 14 HOH HOH . 
R 4 HOH C 5 1008 25 HOH HOH . 
R 4 HOH C 6 1009 28 HOH HOH . 
R 4 HOH C 7 1010 29 HOH HOH . 
R 4 HOH C 8 1011 31 HOH HOH . 
R 4 HOH C 9 1012 32 HOH HOH . 
R 4 HOH C 10 1013 34 HOH HOH . 
R 4 HOH C 11 1014 36 HOH HOH . 
R 4 HOH C 12 1015 41 HOH HOH . 
R 4 HOH C 13 1016 68 HOH HOH . 
R 4 HOH C 14 1017 71 HOH HOH . 
R 4 HOH C 15 1018 72 HOH HOH . 
R 4 HOH C 16 1019 73 HOH HOH . 
R 4 HOH C 17 1020 74 HOH HOH . 
R 4 HOH C 18 1021 77 HOH HOH . 
R 4 HOH C 19 1022 80 HOH HOH . 
R 4 HOH C 20 1023 92 HOH HOH . 
R 4 HOH C 21 1024 93 HOH HOH . 
S 4 HOH D 1 1006 5 HOH HOH . 
S 4 HOH D 2 1007 6 HOH HOH . 
S 4 HOH D 3 1008 18 HOH HOH . 
S 4 HOH D 4 1009 23 HOH HOH . 
S 4 HOH D 5 1010 26 HOH HOH . 
S 4 HOH D 6 1011 27 HOH HOH . 
S 4 HOH D 7 1012 35 HOH HOH . 
S 4 HOH D 8 1013 39 HOH HOH . 
S 4 HOH D 9 1014 75 HOH HOH . 
S 4 HOH D 10 1015 76 HOH HOH . 
S 4 HOH D 11 1016 78 HOH HOH . 
S 4 HOH D 12 1017 79 HOH HOH . 
S 4 HOH D 13 1018 81 HOH HOH . 
S 4 HOH D 14 1019 82 HOH HOH . 
S 4 HOH D 15 1020 83 HOH HOH . 
S 4 HOH D 16 1021 91 HOH HOH . 
T 4 HOH E 1 1003 9 HOH HOH . 
T 4 HOH E 2 1004 11 HOH HOH . 
T 4 HOH E 3 1005 15 HOH HOH . 
T 4 HOH E 4 1006 17 HOH HOH . 
T 4 HOH E 5 1007 19 HOH HOH . 
T 4 HOH E 6 1008 21 HOH HOH . 
T 4 HOH E 7 1009 24 HOH HOH . 
T 4 HOH E 8 1010 43 HOH HOH . 
T 4 HOH E 9 1011 47 HOH HOH . 
T 4 HOH E 10 1012 66 HOH HOH . 
T 4 HOH E 11 1013 67 HOH HOH . 
T 4 HOH E 12 1014 84 HOH HOH . 
T 4 HOH E 13 1015 85 HOH HOH . 
T 4 HOH E 14 1016 86 HOH HOH . 
T 4 HOH E 15 1017 87 HOH HOH . 
T 4 HOH E 16 1018 88 HOH HOH . 
T 4 HOH E 17 1019 89 HOH HOH . 
T 4 HOH E 18 1020 90 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . L 2 54.65 34.012 13.12 0.5 39.93 ? P PO4 1005 D 1 
HETATM 2 O O1 PO4 . . . L 2 55.18 33.795 14.484 0.5 34.81 ? O1 PO4 1005 D 1 
HETATM 3 O O2 PO4 . . . L 2 55.015 32.867 12.256 0.5 44.56 ? O2 PO4 1005 D 1 
HETATM 4 O O3 PO4 . . . L 2 53.165 34.128 13.166 0.5 44.68 ? O3 PO4 1005 D 1 
HETATM 5 O O4 PO4 . . . L 2 55.227 35.26 12.565 0.5 44.18 ? O4 PO4 1005 D 1 
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_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    25 
_model_server_stats.query_time_ms           303 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           5 
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