data_1KYW # _model_server_result.job_id MPkyCLdvFycLTWiwI-oxNA _model_server_result.datetime_utc '2024-11-24 01:27:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kyw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":0}' # _entry.id 1KYW # _exptl.entry_id 1KYW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 212.199 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5-(3,3-DIHYDROXYPROPENY)-3-METHOXY-BENZENE-1,2-DIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.27 _cell.angle_gamma 90 _cell.entry_id 1KYW _cell.length_a 104.473 _cell.length_b 61.996 _cell.length_c 112.213 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KYW _symmetry.cell_setting ? _symmetry.Int_Tables_number 3 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,G,I 1 1 B,D,H 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -40.706764 0 104.569196 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id F _struct_conn.ptnr1_label_atom_id C15 _struct_conn.ptnr1_label_comp_id HFL _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id F _struct_conn.ptnr1_auth_comp_id HFL _struct_conn.ptnr1_auth_seq_id 0 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id CD2 _struct_conn.ptnr2_label_comp_id LEU _struct_conn.ptnr2_label_seq_id 136 _struct_conn.ptnr2_auth_asym_id F _struct_conn.ptnr2_auth_comp_id LEU _struct_conn.ptnr2_auth_seq_id 136 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.057 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H12 O5' _chem_comp.formula_weight 212.199 _chem_comp.id HFL _chem_comp.mon_nstd_flag . _chem_comp.name 5-(3,3-DIHYDROXYPROPENY)-3-METHOXY-BENZENE-1,2-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HFL doub 129 n y C1 C6 HFL sing 130 n y C1 O7 HFL sing 131 n n C2 C3 HFL sing 132 n y C2 O9 HFL sing 133 n n C3 C4 HFL doub 134 n y C3 H3 HFL sing 135 n n C4 C5 HFL sing 136 n y C4 C10 HFL sing 137 n n C5 C6 HFL doub 138 n y C5 H5 HFL sing 139 n n C6 O8 HFL sing 140 n n O7 H7 HFL sing 141 n n O8 H8 HFL sing 142 n n O9 C15 HFL sing 143 n n C10 C11 HFL doub 144 e n C10 H10 HFL sing 145 n n C11 C12 HFL sing 146 n n C11 H11 HFL sing 147 n n C12 O13 HFL sing 148 n n C12 O14 HFL sing 149 n n C12 H12 HFL sing 150 n n O13 H13 HFL sing 151 n n O14 H14 HFL sing 152 n n C15 H151 HFL sing 153 n n C15 H152 HFL sing 154 n n C15 H153 HFL sing 155 n n # _atom_sites.entry_id 1KYW _atom_sites.fract_transf_matrix[1][1] 0.009572 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003726 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01613 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 SAH C 1 1698 1698 SAH SAH . E 2 SAH F 1 1699 1699 SAH SAH . F 3 HFL F 1 0 0 HFL HFL . G 4 HOH A 1 366 6 HOH HOH . G 4 HOH A 2 367 8 HOH HOH . G 4 HOH A 3 368 14 HOH HOH . G 4 HOH A 4 369 22 HOH HOH . G 4 HOH A 5 370 27 HOH HOH . G 4 HOH A 6 371 31 HOH HOH . G 4 HOH A 7 372 36 HOH HOH . G 4 HOH A 8 373 40 HOH HOH . G 4 HOH A 9 374 42 HOH HOH . G 4 HOH A 10 375 43 HOH HOH . G 4 HOH A 11 376 47 HOH HOH . G 4 HOH A 12 377 48 HOH HOH . G 4 HOH A 13 378 61 HOH HOH . G 4 HOH A 14 379 63 HOH HOH . G 4 HOH A 15 380 64 HOH HOH . G 4 HOH A 16 381 68 HOH HOH . G 4 HOH A 17 382 73 HOH HOH . G 4 HOH A 18 383 74 HOH HOH . G 4 HOH A 19 384 83 HOH HOH . G 4 HOH A 20 385 86 HOH HOH . G 4 HOH A 21 386 87 HOH HOH . G 4 HOH A 22 387 90 HOH HOH . G 4 HOH A 23 388 92 HOH HOH . G 4 HOH A 24 389 94 HOH HOH . G 4 HOH A 25 390 95 HOH HOH . G 4 HOH A 26 391 96 HOH HOH . G 4 HOH A 27 392 99 HOH HOH . G 4 HOH A 28 393 102 HOH HOH . G 4 HOH A 29 394 103 HOH HOH . G 4 HOH A 30 395 111 HOH HOH . G 4 HOH A 31 396 113 HOH HOH . G 4 HOH A 32 397 115 HOH HOH . G 4 HOH A 33 398 118 HOH HOH . G 4 HOH A 34 399 120 HOH HOH . G 4 HOH A 35 400 121 HOH HOH . G 4 HOH A 36 401 136 HOH HOH . G 4 HOH A 37 402 137 HOH HOH . G 4 HOH A 38 403 138 HOH HOH . G 4 HOH A 39 404 142 HOH HOH . G 4 HOH A 40 405 146 HOH HOH . G 4 HOH A 41 406 150 HOH HOH . G 4 HOH A 42 407 151 HOH HOH . G 4 HOH A 43 408 152 HOH HOH . G 4 HOH A 44 409 153 HOH HOH . G 4 HOH A 45 410 157 HOH HOH . G 4 HOH A 46 411 159 HOH HOH . G 4 HOH A 47 412 160 HOH HOH . G 4 HOH A 48 413 167 HOH HOH . G 4 HOH A 49 414 169 HOH HOH . G 4 HOH A 50 415 174 HOH HOH . G 4 HOH A 51 416 179 HOH HOH . G 4 HOH A 52 417 181 HOH HOH . G 4 HOH A 53 418 182 HOH HOH . G 4 HOH A 54 419 184 HOH HOH . G 4 HOH A 55 420 188 HOH HOH . G 4 HOH A 56 421 190 HOH HOH . G 4 HOH A 57 422 192 HOH HOH . G 4 HOH A 58 423 197 HOH HOH . G 4 HOH A 59 424 200 HOH HOH . G 4 HOH A 60 425 201 HOH HOH . G 4 HOH A 61 426 202 HOH HOH . G 4 HOH A 62 427 203 HOH HOH . G 4 HOH A 63 428 206 HOH HOH . G 4 HOH A 64 429 210 HOH HOH . G 4 HOH A 65 430 212 HOH HOH . G 4 HOH A 66 431 215 HOH HOH . G 4 HOH A 67 432 219 HOH HOH . G 4 HOH A 68 433 220 HOH HOH . G 4 HOH A 69 434 224 HOH HOH . H 4 HOH C 1 1699 2 HOH HOH . H 4 HOH C 2 1700 4 HOH HOH . H 4 HOH C 3 1701 5 HOH HOH . H 4 HOH C 4 1702 11 HOH HOH . H 4 HOH C 5 1703 13 HOH HOH . H 4 HOH C 6 1704 17 HOH HOH . H 4 HOH C 7 1705 21 HOH HOH . H 4 HOH C 8 1706 23 HOH HOH . H 4 HOH C 9 1707 25 HOH HOH . H 4 HOH C 10 1708 26 HOH HOH . H 4 HOH C 11 1709 29 HOH HOH . H 4 HOH C 12 1710 33 HOH HOH . H 4 HOH C 13 1711 44 HOH HOH . H 4 HOH C 14 1712 52 HOH HOH . H 4 HOH C 15 1713 59 HOH HOH . H 4 HOH C 16 1714 62 HOH HOH . H 4 HOH C 17 1715 65 HOH HOH . H 4 HOH C 18 1716 66 HOH HOH . H 4 HOH C 19 1717 75 HOH HOH . H 4 HOH C 20 1718 76 HOH HOH . H 4 HOH C 21 1719 81 HOH HOH . H 4 HOH C 22 1720 84 HOH HOH . H 4 HOH C 23 1721 85 HOH HOH . H 4 HOH C 24 1722 93 HOH HOH . H 4 HOH C 25 1723 101 HOH HOH . H 4 HOH C 26 1724 104 HOH HOH . H 4 HOH C 27 1725 105 HOH HOH . H 4 HOH C 28 1726 107 HOH HOH . H 4 HOH C 29 1727 108 HOH HOH . H 4 HOH C 30 1728 110 HOH HOH . H 4 HOH C 31 1729 117 HOH HOH . H 4 HOH C 32 1730 125 HOH HOH . H 4 HOH C 33 1731 128 HOH HOH . H 4 HOH C 34 1732 129 HOH HOH . H 4 HOH C 35 1733 131 HOH HOH . H 4 HOH C 36 1734 132 HOH HOH . H 4 HOH C 37 1735 135 HOH HOH . H 4 HOH C 38 1736 140 HOH HOH . H 4 HOH C 39 1737 143 HOH HOH . H 4 HOH C 40 1738 154 HOH HOH . H 4 HOH C 41 1739 155 HOH HOH . H 4 HOH C 42 1740 164 HOH HOH . H 4 HOH C 43 1741 168 HOH HOH . H 4 HOH C 44 1742 170 HOH HOH . H 4 HOH C 45 1743 172 HOH HOH . H 4 HOH C 46 1744 176 HOH HOH . H 4 HOH C 47 1745 178 HOH HOH . H 4 HOH C 48 1746 185 HOH HOH . H 4 HOH C 49 1747 186 HOH HOH . H 4 HOH C 50 1748 189 HOH HOH . H 4 HOH C 51 1749 191 HOH HOH . H 4 HOH C 52 1750 193 HOH HOH . H 4 HOH C 53 1751 194 HOH HOH . H 4 HOH C 54 1752 195 HOH HOH . H 4 HOH C 55 1753 196 HOH HOH . H 4 HOH C 56 1754 198 HOH HOH . H 4 HOH C 57 1755 199 HOH HOH . H 4 HOH C 58 1756 204 HOH HOH . H 4 HOH C 59 1757 205 HOH HOH . H 4 HOH C 60 1758 208 HOH HOH . H 4 HOH C 61 1759 211 HOH HOH . H 4 HOH C 62 1760 213 HOH HOH . H 4 HOH C 63 1761 217 HOH HOH . H 4 HOH C 64 1762 225 HOH HOH . I 4 HOH F 1 1700 1 HOH HOH . I 4 HOH F 2 1701 3 HOH HOH . I 4 HOH F 3 1702 7 HOH HOH . I 4 HOH F 4 1703 9 HOH HOH . I 4 HOH F 5 1704 10 HOH HOH . I 4 HOH F 6 1705 12 HOH HOH . I 4 HOH F 7 1706 15 HOH HOH . I 4 HOH F 8 1707 16 HOH HOH . I 4 HOH F 9 1708 18 HOH HOH . I 4 HOH F 10 1709 19 HOH HOH . I 4 HOH F 11 1710 20 HOH HOH . I 4 HOH F 12 1711 24 HOH HOH . I 4 HOH F 13 1712 28 HOH HOH . I 4 HOH F 14 1713 30 HOH HOH . I 4 HOH F 15 1714 32 HOH HOH . I 4 HOH F 16 1715 34 HOH HOH . I 4 HOH F 17 1716 35 HOH HOH . I 4 HOH F 18 1717 37 HOH HOH . I 4 HOH F 19 1718 38 HOH HOH . I 4 HOH F 20 1719 39 HOH HOH . I 4 HOH F 21 1720 41 HOH HOH . I 4 HOH F 22 1721 45 HOH HOH . I 4 HOH F 23 1722 46 HOH HOH . I 4 HOH F 24 1723 49 HOH HOH . I 4 HOH F 25 1724 50 HOH HOH . I 4 HOH F 26 1725 51 HOH HOH . I 4 HOH F 27 1726 53 HOH HOH . I 4 HOH F 28 1727 54 HOH HOH . I 4 HOH F 29 1728 55 HOH HOH . I 4 HOH F 30 1729 56 HOH HOH . I 4 HOH F 31 1730 57 HOH HOH . I 4 HOH F 32 1731 58 HOH HOH . I 4 HOH F 33 1732 60 HOH HOH . I 4 HOH F 34 1733 67 HOH HOH . I 4 HOH F 35 1734 69 HOH HOH . I 4 HOH F 36 1735 70 HOH HOH . I 4 HOH F 37 1736 71 HOH HOH . I 4 HOH F 38 1737 72 HOH HOH . I 4 HOH F 39 1738 77 HOH HOH . I 4 HOH F 40 1739 78 HOH HOH . I 4 HOH F 41 1740 79 HOH HOH . I 4 HOH F 42 1741 80 HOH HOH . I 4 HOH F 43 1742 82 HOH HOH . I 4 HOH F 44 1743 88 HOH HOH . I 4 HOH F 45 1744 89 HOH HOH . I 4 HOH F 46 1745 91 HOH HOH . I 4 HOH F 47 1746 97 HOH HOH . I 4 HOH F 48 1747 98 HOH HOH . I 4 HOH F 49 1748 100 HOH HOH . I 4 HOH F 50 1749 106 HOH HOH . I 4 HOH F 51 1750 109 HOH HOH . I 4 HOH F 52 1751 114 HOH HOH . I 4 HOH F 53 1752 116 HOH HOH . I 4 HOH F 54 1753 119 HOH HOH . I 4 HOH F 55 1754 122 HOH HOH . I 4 HOH F 56 1755 123 HOH HOH . I 4 HOH F 57 1756 124 HOH HOH . I 4 HOH F 58 1757 126 HOH HOH . I 4 HOH F 59 1758 127 HOH HOH . I 4 HOH F 60 1759 130 HOH HOH . I 4 HOH F 61 1760 133 HOH HOH . I 4 HOH F 62 1761 134 HOH HOH . I 4 HOH F 63 1762 139 HOH HOH . I 4 HOH F 64 1763 141 HOH HOH . I 4 HOH F 65 1764 144 HOH HOH . I 4 HOH F 66 1765 145 HOH HOH . I 4 HOH F 67 1766 147 HOH HOH . I 4 HOH F 68 1767 148 HOH HOH . I 4 HOH F 69 1768 149 HOH HOH . I 4 HOH F 70 1769 156 HOH HOH . I 4 HOH F 71 1770 158 HOH HOH . I 4 HOH F 72 1771 161 HOH HOH . I 4 HOH F 73 1772 162 HOH HOH . I 4 HOH F 74 1773 163 HOH HOH . I 4 HOH F 75 1774 165 HOH HOH . I 4 HOH F 76 1775 166 HOH HOH . I 4 HOH F 77 1776 171 HOH HOH . I 4 HOH F 78 1777 173 HOH HOH . I 4 HOH F 79 1778 175 HOH HOH . I 4 HOH F 80 1779 177 HOH HOH . I 4 HOH F 81 1780 180 HOH HOH . I 4 HOH F 82 1781 183 HOH HOH . I 4 HOH F 83 1782 187 HOH HOH . I 4 HOH F 84 1783 207 HOH HOH . I 4 HOH F 85 1784 209 HOH HOH . I 4 HOH F 86 1785 214 HOH HOH . I 4 HOH F 87 1786 216 HOH HOH . I 4 HOH F 88 1787 218 HOH HOH . I 4 HOH F 89 1788 221 HOH HOH . I 4 HOH F 90 1789 222 HOH HOH . I 4 HOH F 91 1790 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HFL . . . F 3 32.574 -5.449 9.679 1 101.52 ? C1 HFL 0 F 1 HETATM 2 C C2 HFL . . . F 3 31.459 -5.048 10.509 1 100.29 ? C2 HFL 0 F 1 HETATM 3 C C3 HFL . . . F 3 30.303 -4.481 9.865 1 100.33 ? C3 HFL 0 F 1 HETATM 4 C C4 HFL . . . F 3 30.214 -4.296 8.447 1 98.84 ? C4 HFL 0 F 1 HETATM 5 C C5 HFL . . . F 3 31.336 -4.714 7.662 1 102.01 ? C5 HFL 0 F 1 HETATM 6 C C6 HFL . . . F 3 32.507 -5.285 8.265 1 104.93 ? C6 HFL 0 F 1 HETATM 7 O O7 HFL . . . F 3 33.712 -5.989 10.216 1 87.75 ? O7 HFL 0 F 1 HETATM 8 O O8 HFL . . . F 3 33.569 -5.677 7.498 1 111.8 ? O8 HFL 0 F 1 HETATM 9 O O9 HFL . . . F 3 31.504 -5.207 11.881 1 96.93 ? O9 HFL 0 F 1 HETATM 10 C C10 HFL . . . F 3 28.978 -3.681 7.883 1 100.42 ? C10 HFL 0 F 1 HETATM 11 C C11 HFL . . . F 3 28.753 -3.431 6.559 1 99.32 ? C11 HFL 0 F 1 HETATM 12 C C12 HFL . . . F 3 27.447 -2.787 6.154 1 95.85 ? C12 HFL 0 F 1 HETATM 13 O O13 HFL . . . F 3 26.962 -2.052 7.278 1 95.31 ? O13 HFL 0 F 1 HETATM 14 O O14 HFL . . . F 3 26.353 -3.665 5.963 1 97.85 ? O14 HFL 0 F 1 HETATM 15 C C15 HFL . . . F 3 32.091 -4.116 12.566 1 97.4 ? C15 HFL 0 F 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 15 #