data_1KYY # _model_server_result.job_id LUfOEup0VhA9F1LBwFeX2w _model_server_result.datetime_utc '2024-11-18 10:40:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kyy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1002}' # _entry.id 1KYY # _exptl.entry_id 1KYY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KYY _cell.length_a 111.261 _cell.length_b 145.044 _cell.length_c 127.86 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KYY _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA pentameric 5 author_and_software_defined_assembly 1 PISA decameric 10 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_655 -x+1,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 111.261 0 63.93 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 H N N ? 2 J N N ? 2 L N N ? 2 N N N # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 282 n n P O2 PO4 sing 283 n n P O3 PO4 sing 284 n n P O4 PO4 sing 285 n n # _atom_sites.entry_id 1KYY _atom_sites.fract_transf_matrix[1][1] 0.008988 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006894 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007821 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 PO4 A 1 1001 1 PO4 PO4 . G 3 INI A 1 201 201 INI INI . H 2 PO4 B 1 1002 2 PO4 PO4 . I 3 INI B 1 202 202 INI INI . J 2 PO4 C 1 1005 5 PO4 PO4 . K 3 INI C 1 203 203 INI INI . L 2 PO4 D 1 1004 4 PO4 PO4 . M 3 INI D 1 204 204 INI INI . N 2 PO4 E 1 1003 3 PO4 PO4 . O 3 INI E 1 205 205 INI INI . P 4 HOH A 1 1002 2 HOH HOH . P 4 HOH A 2 1003 7 HOH HOH . P 4 HOH A 3 1004 14 HOH HOH . P 4 HOH A 4 1005 17 HOH HOH . P 4 HOH A 5 1006 21 HOH HOH . P 4 HOH A 6 1007 29 HOH HOH . P 4 HOH A 7 1008 31 HOH HOH . P 4 HOH A 8 1009 32 HOH HOH . P 4 HOH A 9 1010 40 HOH HOH . P 4 HOH A 10 1011 42 HOH HOH . P 4 HOH A 11 1012 43 HOH HOH . P 4 HOH A 12 1013 44 HOH HOH . P 4 HOH A 13 1014 45 HOH HOH . P 4 HOH A 14 1015 49 HOH HOH . P 4 HOH A 15 1016 51 HOH HOH . P 4 HOH A 16 1017 53 HOH HOH . P 4 HOH A 17 1018 54 HOH HOH . P 4 HOH A 18 1019 55 HOH HOH . P 4 HOH A 19 1020 56 HOH HOH . P 4 HOH A 20 1021 57 HOH HOH . P 4 HOH A 21 1022 61 HOH HOH . P 4 HOH A 22 1023 62 HOH HOH . P 4 HOH A 23 1024 63 HOH HOH . P 4 HOH A 24 1025 115 HOH HOH . P 4 HOH A 25 1026 116 HOH HOH . P 4 HOH A 26 1027 122 HOH HOH . Q 4 HOH B 1 1003 4 HOH HOH . Q 4 HOH B 2 1004 5 HOH HOH . Q 4 HOH B 3 1005 6 HOH HOH . Q 4 HOH B 4 1006 15 HOH HOH . Q 4 HOH B 5 1007 19 HOH HOH . Q 4 HOH B 6 1008 23 HOH HOH . Q 4 HOH B 7 1009 27 HOH HOH . Q 4 HOH B 8 1010 30 HOH HOH . Q 4 HOH B 9 1011 34 HOH HOH . Q 4 HOH B 10 1012 36 HOH HOH . Q 4 HOH B 11 1013 46 HOH HOH . Q 4 HOH B 12 1014 47 HOH HOH . Q 4 HOH B 13 1015 48 HOH HOH . Q 4 HOH B 14 1016 50 HOH HOH . Q 4 HOH B 15 1017 52 HOH HOH . Q 4 HOH B 16 1018 67 HOH HOH . Q 4 HOH B 17 1019 68 HOH HOH . Q 4 HOH B 18 1020 69 HOH HOH . Q 4 HOH B 19 1021 73 HOH HOH . Q 4 HOH B 20 1022 74 HOH HOH . Q 4 HOH B 21 1023 77 HOH HOH . Q 4 HOH B 22 1024 79 HOH HOH . Q 4 HOH B 23 1025 81 HOH HOH . Q 4 HOH B 24 1026 82 HOH HOH . Q 4 HOH B 25 1027 83 HOH HOH . Q 4 HOH B 26 1028 84 HOH HOH . Q 4 HOH B 27 1029 85 HOH HOH . Q 4 HOH B 28 1030 86 HOH HOH . Q 4 HOH B 29 1031 87 HOH HOH . Q 4 HOH B 30 1032 88 HOH HOH . Q 4 HOH B 31 1033 89 HOH HOH . Q 4 HOH B 32 1034 125 HOH HOH . R 4 HOH C 1 1006 1 HOH HOH . R 4 HOH C 2 1007 8 HOH HOH . R 4 HOH C 3 1008 9 HOH HOH . R 4 HOH C 4 1009 18 HOH HOH . R 4 HOH C 5 1010 22 HOH HOH . R 4 HOH C 6 1011 25 HOH HOH . R 4 HOH C 7 1012 38 HOH HOH . R 4 HOH C 8 1013 65 HOH HOH . R 4 HOH C 9 1014 70 HOH HOH . R 4 HOH C 10 1015 71 HOH HOH . R 4 HOH C 11 1016 72 HOH HOH . R 4 HOH C 12 1017 75 HOH HOH . R 4 HOH C 13 1018 76 HOH HOH . R 4 HOH C 14 1019 78 HOH HOH . R 4 HOH C 15 1020 80 HOH HOH . R 4 HOH C 16 1021 90 HOH HOH . R 4 HOH C 17 1022 91 HOH HOH . R 4 HOH C 18 1023 92 HOH HOH . R 4 HOH C 19 1024 93 HOH HOH . R 4 HOH C 20 1025 95 HOH HOH . R 4 HOH C 21 1026 99 HOH HOH . R 4 HOH C 22 1027 100 HOH HOH . R 4 HOH C 23 1028 101 HOH HOH . R 4 HOH C 24 1029 102 HOH HOH . R 4 HOH C 25 1030 103 HOH HOH . R 4 HOH C 26 1031 104 HOH HOH . R 4 HOH C 27 1032 105 HOH HOH . R 4 HOH C 28 1033 106 HOH HOH . R 4 HOH C 29 1034 107 HOH HOH . R 4 HOH C 30 1035 108 HOH HOH . R 4 HOH C 31 1036 109 HOH HOH . R 4 HOH C 32 1037 110 HOH HOH . R 4 HOH C 33 1038 111 HOH HOH . R 4 HOH C 34 1039 123 HOH HOH . R 4 HOH C 35 1040 124 HOH HOH . S 4 HOH D 1 1005 3 HOH HOH . S 4 HOH D 2 1006 12 HOH HOH . S 4 HOH D 3 1007 13 HOH HOH . S 4 HOH D 4 1008 20 HOH HOH . S 4 HOH D 5 1009 26 HOH HOH . S 4 HOH D 6 1010 33 HOH HOH . S 4 HOH D 7 1011 35 HOH HOH . S 4 HOH D 8 1012 58 HOH HOH . S 4 HOH D 9 1013 94 HOH HOH . S 4 HOH D 10 1014 96 HOH HOH . S 4 HOH D 11 1015 97 HOH HOH . S 4 HOH D 12 1016 98 HOH HOH . S 4 HOH D 13 1017 113 HOH HOH . S 4 HOH D 14 1018 114 HOH HOH . S 4 HOH D 15 1019 126 HOH HOH . S 4 HOH D 16 1020 127 HOH HOH . T 4 HOH E 1 1004 10 HOH HOH . T 4 HOH E 2 1005 11 HOH HOH . T 4 HOH E 3 1006 16 HOH HOH . T 4 HOH E 4 1007 24 HOH HOH . T 4 HOH E 5 1008 28 HOH HOH . T 4 HOH E 6 1009 37 HOH HOH . T 4 HOH E 7 1010 39 HOH HOH . T 4 HOH E 8 1011 41 HOH HOH . T 4 HOH E 9 1012 59 HOH HOH . T 4 HOH E 10 1013 60 HOH HOH . T 4 HOH E 11 1014 64 HOH HOH . T 4 HOH E 12 1015 66 HOH HOH . T 4 HOH E 13 1016 112 HOH HOH . T 4 HOH E 14 1017 117 HOH HOH . T 4 HOH E 15 1018 118 HOH HOH . T 4 HOH E 16 1019 119 HOH HOH . T 4 HOH E 17 1020 120 HOH HOH . T 4 HOH E 18 1021 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . H 2 68.214 27.271 43.6 1 38.68 ? P PO4 1002 B 1 HETATM 2 O O1 PO4 . . . H 2 68.614 26.032 42.88 1 37.93 ? O1 PO4 1002 B 1 HETATM 3 O O2 PO4 . . . H 2 69.397 27.827 44.295 1 39.72 ? O2 PO4 1002 B 1 HETATM 4 O O3 PO4 . . . H 2 67.687 28.273 42.632 1 28.89 ? O3 PO4 1002 B 1 HETATM 5 O O4 PO4 . . . H 2 67.163 26.94 44.593 1 38.67 ? O4 PO4 1002 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #