data_1KZK # _model_server_result.job_id KVhEXdnq35EE2T1YHM6UgA _model_server_result.datetime_utc '2024-11-05 01:25:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1kzk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":803}' # _entry.id 1KZK # _exptl.entry_id 1KZK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1KZK _cell.length_a 51.203 _cell.length_b 58.409 _cell.length_c 62.858 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1KZK _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 M N N # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 1KZK _atom_sites.fract_transf_matrix[1][1] 0.01953 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017121 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015909 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 JE2 A 1 701 1 JE2 JE2 . D 3 CL A 1 902 1 CL CL . E 3 CL A 1 905 4 CL CL . F 4 EDO A 1 801 1 EDO EDO . G 4 EDO A 1 803 3 EDO EDO . H 4 EDO A 1 804 4 EDO EDO . I 4 EDO A 1 805 5 EDO EDO . J 3 CL B 1 901 32 CL CL . K 3 CL B 1 903 2 CL CL . L 3 CL B 1 904 3 CL CL . M 4 EDO B 1 802 2 EDO EDO . N 5 HOH A 1 906 7 HOH HOH . N 5 HOH A 2 907 9 HOH HOH . N 5 HOH A 3 908 37 HOH HOH . N 5 HOH A 4 909 38 HOH HOH . N 5 HOH A 5 910 39 HOH HOH . N 5 HOH A 6 911 40 HOH HOH . N 5 HOH A 7 912 41 HOH HOH . N 5 HOH A 8 913 42 HOH HOH . N 5 HOH A 9 914 43 HOH HOH . N 5 HOH A 10 915 44 HOH HOH . N 5 HOH A 11 916 45 HOH HOH . N 5 HOH A 12 917 46 HOH HOH . N 5 HOH A 13 918 47 HOH HOH . N 5 HOH A 14 919 48 HOH HOH . N 5 HOH A 15 920 49 HOH HOH . N 5 HOH A 16 921 50 HOH HOH . N 5 HOH A 17 922 51 HOH HOH . N 5 HOH A 18 923 52 HOH HOH . N 5 HOH A 19 924 53 HOH HOH . N 5 HOH A 20 925 54 HOH HOH . N 5 HOH A 21 926 55 HOH HOH . N 5 HOH A 22 927 56 HOH HOH . N 5 HOH A 23 928 57 HOH HOH . N 5 HOH A 24 929 58 HOH HOH . N 5 HOH A 25 930 60 HOH HOH . N 5 HOH A 26 931 62 HOH HOH . N 5 HOH A 27 932 63 HOH HOH . N 5 HOH A 28 933 65 HOH HOH . N 5 HOH A 29 934 66 HOH HOH . N 5 HOH A 30 935 94 HOH HOH . N 5 HOH A 31 936 95 HOH HOH . N 5 HOH A 32 937 96 HOH HOH . N 5 HOH A 33 938 97 HOH HOH . N 5 HOH A 34 939 98 HOH HOH . N 5 HOH A 35 940 99 HOH HOH . N 5 HOH A 36 941 100 HOH HOH . N 5 HOH A 37 942 101 HOH HOH . N 5 HOH A 38 943 102 HOH HOH . N 5 HOH A 39 944 103 HOH HOH . N 5 HOH A 40 945 104 HOH HOH . N 5 HOH A 41 946 105 HOH HOH . N 5 HOH A 42 947 106 HOH HOH . N 5 HOH A 43 948 107 HOH HOH . N 5 HOH A 44 949 108 HOH HOH . N 5 HOH A 45 950 109 HOH HOH . N 5 HOH A 46 951 110 HOH HOH . N 5 HOH A 47 952 111 HOH HOH . N 5 HOH A 48 953 112 HOH HOH . N 5 HOH A 49 954 113 HOH HOH . N 5 HOH A 50 955 114 HOH HOH . N 5 HOH A 51 956 115 HOH HOH . N 5 HOH A 52 957 116 HOH HOH . N 5 HOH A 53 958 117 HOH HOH . N 5 HOH A 54 959 118 HOH HOH . N 5 HOH A 55 960 119 HOH HOH . N 5 HOH A 56 961 120 HOH HOH . N 5 HOH A 57 962 121 HOH HOH . N 5 HOH A 58 963 122 HOH HOH . N 5 HOH A 59 964 123 HOH HOH . N 5 HOH A 60 965 124 HOH HOH . N 5 HOH A 61 966 128 HOH HOH . N 5 HOH A 62 967 129 HOH HOH . N 5 HOH A 63 968 130 HOH HOH . N 5 HOH A 64 969 131 HOH HOH . N 5 HOH A 65 970 132 HOH HOH . N 5 HOH A 66 971 133 HOH HOH . N 5 HOH A 67 972 134 HOH HOH . N 5 HOH A 68 973 135 HOH HOH . N 5 HOH A 69 974 136 HOH HOH . N 5 HOH A 70 975 137 HOH HOH . N 5 HOH A 71 976 138 HOH HOH . N 5 HOH A 72 977 139 HOH HOH . N 5 HOH A 73 978 140 HOH HOH . N 5 HOH A 74 979 141 HOH HOH . N 5 HOH A 75 980 142 HOH HOH . N 5 HOH A 76 981 143 HOH HOH . N 5 HOH A 77 982 144 HOH HOH . N 5 HOH A 78 983 145 HOH HOH . N 5 HOH A 79 984 146 HOH HOH . N 5 HOH A 80 985 147 HOH HOH . N 5 HOH A 81 986 148 HOH HOH . N 5 HOH A 82 987 149 HOH HOH . N 5 HOH A 83 988 150 HOH HOH . N 5 HOH A 84 989 151 HOH HOH . N 5 HOH A 85 990 152 HOH HOH . N 5 HOH A 86 991 153 HOH HOH . N 5 HOH A 87 992 154 HOH HOH . N 5 HOH A 88 993 155 HOH HOH . N 5 HOH A 89 994 156 HOH HOH . N 5 HOH A 90 995 157 HOH HOH . N 5 HOH A 91 996 158 HOH HOH . N 5 HOH A 92 997 159 HOH HOH . N 5 HOH A 93 998 160 HOH HOH . N 5 HOH A 94 999 161 HOH HOH . N 5 HOH A 95 1000 162 HOH HOH . N 5 HOH A 96 1001 163 HOH HOH . N 5 HOH A 97 1002 164 HOH HOH . N 5 HOH A 98 1003 165 HOH HOH . N 5 HOH A 99 1004 166 HOH HOH . N 5 HOH A 100 1005 167 HOH HOH . N 5 HOH A 101 1006 168 HOH HOH . N 5 HOH A 102 1007 169 HOH HOH . N 5 HOH A 103 1008 170 HOH HOH . N 5 HOH A 104 1009 171 HOH HOH . N 5 HOH A 105 1010 172 HOH HOH . N 5 HOH A 106 1011 173 HOH HOH . N 5 HOH A 107 1012 174 HOH HOH . N 5 HOH A 108 1013 175 HOH HOH . N 5 HOH A 109 1014 176 HOH HOH . N 5 HOH A 110 1015 177 HOH HOH . N 5 HOH A 111 1016 178 HOH HOH . N 5 HOH A 112 1017 179 HOH HOH . N 5 HOH A 113 1018 180 HOH HOH . N 5 HOH A 114 1019 181 HOH HOH . N 5 HOH A 115 1020 182 HOH HOH . N 5 HOH A 116 1021 183 HOH HOH . N 5 HOH A 117 1022 185 HOH HOH . N 5 HOH A 118 1023 186 HOH HOH . N 5 HOH A 119 1024 187 HOH HOH . N 5 HOH A 120 1025 189 HOH HOH . N 5 HOH A 121 1026 190 HOH HOH . N 5 HOH A 122 1027 191 HOH HOH . N 5 HOH A 123 1028 197 HOH HOH . N 5 HOH A 124 1029 200 HOH HOH . N 5 HOH A 125 1030 208 HOH HOH . N 5 HOH A 126 1031 214 HOH HOH . N 5 HOH A 127 1032 215 HOH HOH . N 5 HOH A 128 1033 216 HOH HOH . N 5 HOH A 129 1034 217 HOH HOH . N 5 HOH A 130 1035 219 HOH HOH . N 5 HOH A 131 1036 220 HOH HOH . N 5 HOH A 132 1037 301 HOH HOH . N 5 HOH A 133 1038 406 HOH HOH . N 5 HOH A 134 1039 566 HOH HOH . N 5 HOH A 135 1040 608 HOH HOH . O 5 HOH B 1 905 1 HOH HOH . O 5 HOH B 2 906 2 HOH HOH . O 5 HOH B 3 907 3 HOH HOH . O 5 HOH B 4 908 4 HOH HOH . O 5 HOH B 5 909 5 HOH HOH . O 5 HOH B 6 910 10 HOH HOH . O 5 HOH B 7 911 11 HOH HOH . O 5 HOH B 8 912 12 HOH HOH . O 5 HOH B 9 913 13 HOH HOH . O 5 HOH B 10 914 14 HOH HOH . O 5 HOH B 11 915 15 HOH HOH . O 5 HOH B 12 916 16 HOH HOH . O 5 HOH B 13 917 17 HOH HOH . O 5 HOH B 14 918 18 HOH HOH . O 5 HOH B 15 919 19 HOH HOH . O 5 HOH B 16 920 20 HOH HOH . O 5 HOH B 17 921 21 HOH HOH . O 5 HOH B 18 922 22 HOH HOH . O 5 HOH B 19 923 23 HOH HOH . O 5 HOH B 20 924 24 HOH HOH . O 5 HOH B 21 925 25 HOH HOH . O 5 HOH B 22 926 26 HOH HOH . O 5 HOH B 23 927 27 HOH HOH . O 5 HOH B 24 928 28 HOH HOH . O 5 HOH B 25 929 29 HOH HOH . O 5 HOH B 26 930 30 HOH HOH . O 5 HOH B 27 931 31 HOH HOH . O 5 HOH B 28 932 32 HOH HOH . O 5 HOH B 29 933 33 HOH HOH . O 5 HOH B 30 934 34 HOH HOH . O 5 HOH B 31 935 35 HOH HOH . O 5 HOH B 32 936 36 HOH HOH . O 5 HOH B 33 937 59 HOH HOH . O 5 HOH B 34 938 64 HOH HOH . O 5 HOH B 35 939 67 HOH HOH . O 5 HOH B 36 940 68 HOH HOH . O 5 HOH B 37 941 69 HOH HOH . O 5 HOH B 38 942 70 HOH HOH . O 5 HOH B 39 943 71 HOH HOH . O 5 HOH B 40 944 72 HOH HOH . O 5 HOH B 41 945 73 HOH HOH . O 5 HOH B 42 946 74 HOH HOH . O 5 HOH B 43 947 75 HOH HOH . O 5 HOH B 44 948 76 HOH HOH . O 5 HOH B 45 949 77 HOH HOH . O 5 HOH B 46 950 78 HOH HOH . O 5 HOH B 47 951 79 HOH HOH . O 5 HOH B 48 952 80 HOH HOH . O 5 HOH B 49 953 81 HOH HOH . O 5 HOH B 50 954 82 HOH HOH . O 5 HOH B 51 955 83 HOH HOH . O 5 HOH B 52 956 84 HOH HOH . O 5 HOH B 53 957 85 HOH HOH . O 5 HOH B 54 958 86 HOH HOH . O 5 HOH B 55 959 87 HOH HOH . O 5 HOH B 56 960 88 HOH HOH . O 5 HOH B 57 961 89 HOH HOH . O 5 HOH B 58 962 90 HOH HOH . O 5 HOH B 59 963 91 HOH HOH . O 5 HOH B 60 964 92 HOH HOH . O 5 HOH B 61 965 93 HOH HOH . O 5 HOH B 62 966 125 HOH HOH . O 5 HOH B 63 967 126 HOH HOH . O 5 HOH B 64 968 127 HOH HOH . O 5 HOH B 65 969 184 HOH HOH . O 5 HOH B 66 970 188 HOH HOH . O 5 HOH B 67 971 192 HOH HOH . O 5 HOH B 68 972 193 HOH HOH . O 5 HOH B 69 973 194 HOH HOH . O 5 HOH B 70 974 195 HOH HOH . O 5 HOH B 71 975 196 HOH HOH . O 5 HOH B 72 976 201 HOH HOH . O 5 HOH B 73 977 202 HOH HOH . O 5 HOH B 74 978 203 HOH HOH . O 5 HOH B 75 979 204 HOH HOH . O 5 HOH B 76 980 205 HOH HOH . O 5 HOH B 77 981 206 HOH HOH . O 5 HOH B 78 982 207 HOH HOH . O 5 HOH B 79 983 209 HOH HOH . O 5 HOH B 80 984 210 HOH HOH . O 5 HOH B 81 985 211 HOH HOH . O 5 HOH B 82 986 212 HOH HOH . O 5 HOH B 83 987 213 HOH HOH . O 5 HOH B 84 988 218 HOH HOH . O 5 HOH B 85 989 221 HOH HOH . O 5 HOH B 86 990 222 HOH HOH . O 5 HOH B 87 991 223 HOH HOH . O 5 HOH B 88 992 426 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . G 4 43.881 0.996 31.097 1 19.24 ? C1 EDO 803 A 1 HETATM 2 O O1 EDO . . . G 4 42.801 1.514 31.884 1 16.04 ? O1 EDO 803 A 1 HETATM 3 C C2 EDO . . . G 4 43.798 1.443 29.645 1 15.9 ? C2 EDO 803 A 1 HETATM 4 O O2 EDO . . . G 4 43.997 2.884 29.539 1 14.19 ? O2 EDO 803 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #