data_1L0L
#
_model_server_result.job_id            8I53ueh_i4qB4Sv6BFY-pA 
_model_server_result.datetime_utc      '2024-11-04 23:22:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l0l 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"O","auth_seq_id":242}' 
#
_entry.id    1L0L 
#
_exptl.entry_id    1L0L 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1L0L 
_cell.length_a            154.094 
_cell.length_b            154.094 
_cell.length_c            591.839 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L0L 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        98 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? undecameric 11 author_defined_assembly 1 
PISA,PQS 22-meric 22 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 154.094 154.094 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 L N N 
? 12 M N N 
? 12 O N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
covale ? covale1 D SG CYS 37 D CYS 37 1_555 O CAB HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? 
covale ? covale2 D SG CYS 40 D CYS 40 1_555 O CAC HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 M FE HEM . C HEM 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? 
metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 L FE HEM . C HEM 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 M FE HEM . C HEM 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? 
metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 L FE HEM . C HEM 609 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 O FE HEM . D HEM 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.676 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.37 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 P FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc10 E NE2 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc11 E ND1 HIS 161 E HIS 161 1_555 P FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.092 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 182 n n 
CHA C4D HEM doub 183 n n 
CHA HHA HEM sing 184 n n 
CHB C4A HEM sing 185 n n 
CHB C1B HEM doub 186 n n 
CHB HHB HEM sing 187 n n 
CHC C4B HEM sing 188 n n 
CHC C1C HEM doub 189 n n 
CHC HHC HEM sing 190 n n 
CHD C4C HEM doub 191 n n 
CHD C1D HEM sing 192 n n 
CHD HHD HEM sing 193 n n 
C1A C2A HEM doub 194 n y 
C1A NA HEM sing 195 n y 
C2A C3A HEM sing 196 n y 
C2A CAA HEM sing 197 n n 
C3A C4A HEM doub 198 n y 
C3A CMA HEM sing 199 n n 
C4A NA HEM sing 200 n y 
CMA HMA HEM sing 201 n n 
CMA HMAA HEM sing 202 n n 
CMA HMAB HEM sing 203 n n 
CAA CBA HEM sing 204 n n 
CAA HAA HEM sing 205 n n 
CAA HAAA HEM sing 206 n n 
CBA CGA HEM sing 207 n n 
CBA HBA HEM sing 208 n n 
CBA HBAA HEM sing 209 n n 
CGA O1A HEM doub 210 n n 
CGA O2A HEM sing 211 n n 
C1B C2B HEM sing 212 n n 
C1B NB HEM sing 213 n n 
C2B C3B HEM doub 214 n n 
C2B CMB HEM sing 215 n n 
C3B C4B HEM sing 216 n n 
C3B CAB HEM sing 217 n n 
C4B NB HEM doub 218 n n 
CMB HMB HEM sing 219 n n 
CMB HMBA HEM sing 220 n n 
CMB HMBB HEM sing 221 n n 
CAB CBB HEM doub 222 n n 
CAB HAB HEM sing 223 n n 
CBB HBB HEM sing 224 n n 
CBB HBBA HEM sing 225 n n 
C1C C2C HEM sing 226 n y 
C1C NC HEM sing 227 n y 
C2C C3C HEM doub 228 n y 
C2C CMC HEM sing 229 n n 
C3C C4C HEM sing 230 n y 
C3C CAC HEM sing 231 n n 
C4C NC HEM sing 232 n y 
CMC HMC HEM sing 233 n n 
CMC HMCA HEM sing 234 n n 
CMC HMCB HEM sing 235 n n 
CAC CBC HEM doub 236 n n 
CAC HAC HEM sing 237 n n 
CBC HBC HEM sing 238 n n 
CBC HBCA HEM sing 239 n n 
C1D C2D HEM sing 240 n n 
C1D ND HEM doub 241 n n 
C2D C3D HEM doub 242 n n 
C2D CMD HEM sing 243 n n 
C3D C4D HEM sing 244 n n 
C3D CAD HEM sing 245 n n 
C4D ND HEM sing 246 n n 
CMD HMD HEM sing 247 n n 
CMD HMDA HEM sing 248 n n 
CMD HMDB HEM sing 249 n n 
CAD CBD HEM sing 250 n n 
CAD HAD HEM sing 251 n n 
CAD HADA HEM sing 252 n n 
CBD CGD HEM sing 253 n n 
CBD HBD HEM sing 254 n n 
CBD HBDA HEM sing 255 n n 
CGD O1D HEM doub 256 n n 
CGD O2D HEM sing 257 n n 
O2A H2A HEM sing 258 n n 
O2D H2D HEM sing 259 n n 
FE NA HEM sing 260 n n 
FE NB HEM sing 261 n n 
FE NC HEM sing 262 n n 
FE ND HEM sing 263 n n 
#
_atom_sites.entry_id                     1L0L 
_atom_sites.fract_transf_matrix[1][1]    0.00649 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00649 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00169 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 12 HEM C 1 609 609 HEM HEB . 
M 12 HEM C 1 610 610 HEM HEB . 
N 13 FMX C 1 611 611 FMX FMX . 
O 12 HEM D 1 242 242 HEM HEC . 
P 14 FES E 1 197 197 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . O 12 57.603 59.501 193.512 1 15.06 ? CHA HEM 242 D 1 
HETATM 2 C CHB HEM . . . O 12 53.882 62.511 192.875 1 12.2 ? CHB HEM 242 D 1 
HETATM 3 C CHC HEM . . . O 12 54.126 63.79 197.485 1 19.95 ? CHC HEM 242 D 1 
HETATM 4 C CHD HEM . . . O 12 57.854 60.764 198.217 1 15.26 ? CHD HEM 242 D 1 
HETATM 5 C C1A HEM . . . O 12 56.558 60.189 192.94 1 13.79 ? C1A HEM 242 D 1 
HETATM 6 C C2A HEM . . . O 12 56.064 60.065 191.562 1 9.91 ? C2A HEM 242 D 1 
HETATM 7 C C3A HEM . . . O 12 55.055 60.915 191.416 1 9.93 ? C3A HEM 242 D 1 
HETATM 8 C C4A HEM . . . O 12 54.847 61.585 192.666 1 11.49 ? C4A HEM 242 D 1 
HETATM 9 C CMA HEM . . . O 12 54.229 61.145 190.131 1 8.04 ? CMA HEM 242 D 1 
HETATM 10 C CAA HEM . . . O 12 56.598 59.212 190.396 1 10.05 ? CAA HEM 242 D 1 
HETATM 11 C CBA HEM . . . O 12 56.53 57.706 190.488 1 8.09 ? CBA HEM 242 D 1 
HETATM 12 C CGA HEM . . . O 12 57.484 57.281 189.401 1 6.7 ? CGA HEM 242 D 1 
HETATM 13 O O1A HEM . . . O 12 58.594 57.882 189.37 1 11.62 ? O1A HEM 242 D 1 
HETATM 14 O O2A HEM . . . O 12 57.159 56.395 188.559 1 2 ? O2A HEM 242 D 1 
HETATM 15 C C1B HEM . . . O 12 53.614 63.08 194.069 1 16.32 ? C1B HEM 242 D 1 
HETATM 16 C C2B HEM . . . O 12 52.507 63.945 194.311 1 17.4 ? C2B HEM 242 D 1 
HETATM 17 C C3B HEM . . . O 12 52.555 64.313 195.586 1 15.37 ? C3B HEM 242 D 1 
HETATM 18 C C4B HEM . . . O 12 53.711 63.681 196.185 1 15.71 ? C4B HEM 242 D 1 
HETATM 19 C CMB HEM . . . O 12 51.486 64.366 193.234 1 18.21 ? CMB HEM 242 D 1 
HETATM 20 C CAB HEM . . . O 12 51.554 65.245 196.29 1 13.98 ? CAB HEM 242 D 1 
HETATM 21 C CBB HEM . . . O 12 50.232 65.164 196.048 1 14.77 ? CBB HEM 242 D 1 
HETATM 22 C C1C HEM . . . O 12 55.171 63.1 198.073 1 17.86 ? C1C HEM 242 D 1 
HETATM 23 C C2C HEM . . . O 12 55.569 63.235 199.449 1 15.3 ? C2C HEM 242 D 1 
HETATM 24 C C3C HEM . . . O 12 56.627 62.44 199.652 1 15.46 ? C3C HEM 242 D 1 
HETATM 25 C C4C HEM . . . O 12 56.88 61.711 198.419 1 15.87 ? C4C HEM 242 D 1 
HETATM 26 C CMC HEM . . . O 12 54.972 64.269 200.422 1 15.59 ? CMC HEM 242 D 1 
HETATM 27 C CAC HEM . . . O 12 57.418 62.273 200.973 1 14.41 ? CAC HEM 242 D 1 
HETATM 28 C CBC HEM . . . O 12 56.873 61.661 202.034 1 15.52 ? CBC HEM 242 D 1 
HETATM 29 C C1D HEM . . . O 12 58.159 60.163 197.019 1 15.29 ? C1D HEM 242 D 1 
HETATM 30 C C2D HEM . . . O 12 59.236 59.234 196.812 1 15.41 ? C2D HEM 242 D 1 
HETATM 31 C C3D HEM . . . O 12 59.159 58.832 195.351 1 15.1 ? C3D HEM 242 D 1 
HETATM 32 C C4D HEM . . . O 12 58.04 59.567 194.807 1 13.36 ? C4D HEM 242 D 1 
HETATM 33 C CMD HEM . . . O 12 60.249 58.755 197.868 1 17.34 ? CMD HEM 242 D 1 
HETATM 34 C CAD HEM . . . O 12 60.109 57.861 194.613 1 16.79 ? CAD HEM 242 D 1 
HETATM 35 C CBD HEM . . . O 12 59.454 56.519 194.295 1 14.08 ? CBD HEM 242 D 1 
HETATM 36 C CGD HEM . . . O 12 60.562 55.56 193.939 1 14.43 ? CGD HEM 242 D 1 
HETATM 37 O O1D HEM . . . O 12 60.95 54.795 194.841 1 16.31 ? O1D HEM 242 D 1 
HETATM 38 O O2D HEM . . . O 12 61.074 55.567 192.777 1 13.7 ? O2D HEM 242 D 1 
HETATM 39 N NA HEM . . . O 12 55.776 61.125 193.59 1 12.89 ? NA HEM 242 D 1 
HETATM 40 N NB HEM . . . O 12 54.331 62.926 195.234 1 15.41 ? NB HEM 242 D 1 
HETATM 41 N NC HEM . . . O 12 55.97 62.134 197.477 1 15.76 ? NC HEM 242 D 1 
HETATM 42 N ND HEM . . . O 12 57.481 60.336 195.812 1 14.79 ? ND HEM 242 D 1 
HETATM 43 FE FE HEM . . . O 12 55.926 61.586 195.608 1 15.06 ? FE HEM 242 D 1 
#
_model_server_stats.io_time_ms              14 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#