data_1L0O # _model_server_result.job_id bHYaTU2XxsmwvbBKjwhZCA _model_server_result.datetime_utc '2025-03-05 20:01:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l0o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":601}' # _entry.id 1L0O # _exptl.entry_id 1L0O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1L0O _cell.length_a 97.31 _cell.length_b 97.31 _cell.length_c 262.98 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L0O _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A ND2 ASN 50 A ASN 50 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? metalc ? metalc2 A OD1 ASN 50 A ASN 50 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.894 ? metalc ? metalc3 H O HOH . A HOH 506 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc4 E O1B ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc5 E O1A ADP . A ADP 601 1_555 D MG MG . A MG 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc6 B OD1 ASN 50 B ASN 50 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.349 ? metalc ? metalc7 G O1B ADP . B ADP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.004 ? metalc ? metalc8 G O1A ADP . B ADP 701 1_555 F MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 1 n n PB O2B ADP sing 2 n n PB O3B ADP sing 3 n n PB O3A ADP sing 4 n n O2B HOB2 ADP sing 5 n n O3B HOB3 ADP sing 6 n n PA O1A ADP doub 7 n n PA O2A ADP sing 8 n n PA O3A ADP sing 9 n n PA O5' ADP sing 10 n n O2A HOA2 ADP sing 11 n n O5' C5' ADP sing 12 n n C5' C4' ADP sing 13 n n C5' "H5'1" ADP sing 14 n n C5' "H5'2" ADP sing 15 n n C4' O4' ADP sing 16 n n C4' C3' ADP sing 17 n n C4' H4' ADP sing 18 n n O4' C1' ADP sing 19 n n C3' O3' ADP sing 20 n n C3' C2' ADP sing 21 n n C3' H3' ADP sing 22 n n O3' HO3' ADP sing 23 n n C2' O2' ADP sing 24 n n C2' C1' ADP sing 25 n n C2' H2' ADP sing 26 n n O2' HO2' ADP sing 27 n n C1' N9 ADP sing 28 n n C1' H1' ADP sing 29 n n N9 C8 ADP sing 30 n y N9 C4 ADP sing 31 n y C8 N7 ADP doub 32 n y C8 H8 ADP sing 33 n n N7 C5 ADP sing 34 n y C5 C6 ADP sing 35 n y C5 C4 ADP doub 36 n y C6 N6 ADP sing 37 n n C6 N1 ADP doub 38 n y N6 HN61 ADP sing 39 n n N6 HN62 ADP sing 40 n n N1 C2 ADP sing 41 n y C2 N3 ADP doub 42 n y C2 H2 ADP sing 43 n n N3 C4 ADP sing 44 n y # _atom_sites.entry_id 1L0O _atom_sites.fract_transf_matrix[1][1] 0.010276 _atom_sites.fract_transf_matrix[1][2] 0.005933 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011866 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 MG A 1 602 1 MG MG2 . E 4 ADP A 1 601 1 ADP ADP . F 3 MG B 1 702 1 MG MG2 . G 4 ADP B 1 701 1 ADP ADP . H 5 HOH A 1 501 501 HOH TIP . H 5 HOH A 2 502 502 HOH TIP . H 5 HOH A 3 504 504 HOH TIP . H 5 HOH A 4 505 505 HOH TIP . H 5 HOH A 5 506 506 HOH TIP . H 5 HOH A 6 508 508 HOH TIP . H 5 HOH A 7 511 511 HOH TIP . H 5 HOH A 8 512 512 HOH TIP . H 5 HOH A 9 513 513 HOH TIP . H 5 HOH A 10 518 518 HOH TIP . H 5 HOH A 11 520 520 HOH TIP . H 5 HOH A 12 521 521 HOH TIP . H 5 HOH A 13 522 522 HOH TIP . H 5 HOH A 14 525 525 HOH TIP . H 5 HOH A 15 526 526 HOH TIP . H 5 HOH A 16 528 528 HOH TIP . H 5 HOH A 17 531 531 HOH TIP . H 5 HOH A 18 532 532 HOH TIP . H 5 HOH A 19 533 533 HOH TIP . H 5 HOH A 20 536 536 HOH TIP . H 5 HOH A 21 537 537 HOH TIP . H 5 HOH A 22 538 538 HOH TIP . H 5 HOH A 23 540 540 HOH TIP . H 5 HOH A 24 542 542 HOH TIP . H 5 HOH A 25 547 547 HOH TIP . H 5 HOH A 26 548 548 HOH TIP . H 5 HOH A 27 549 549 HOH TIP . H 5 HOH A 28 551 551 HOH TIP . H 5 HOH A 29 552 552 HOH TIP . H 5 HOH A 30 557 557 HOH TIP . H 5 HOH A 31 561 561 HOH TIP . H 5 HOH A 32 562 562 HOH TIP . H 5 HOH A 33 565 565 HOH TIP . H 5 HOH A 34 566 566 HOH TIP . H 5 HOH A 35 569 569 HOH TIP . H 5 HOH A 36 571 571 HOH TIP . H 5 HOH A 37 572 572 HOH TIP . H 5 HOH A 38 577 577 HOH TIP . H 5 HOH A 39 580 580 HOH TIP . H 5 HOH A 40 581 581 HOH TIP . H 5 HOH A 41 583 583 HOH TIP . I 5 HOH B 1 503 503 HOH TIP . I 5 HOH B 2 507 507 HOH TIP . I 5 HOH B 3 509 509 HOH TIP . I 5 HOH B 4 514 514 HOH TIP . I 5 HOH B 5 515 515 HOH TIP . I 5 HOH B 6 516 516 HOH TIP . I 5 HOH B 7 519 519 HOH TIP . I 5 HOH B 8 523 523 HOH TIP . I 5 HOH B 9 527 527 HOH TIP . I 5 HOH B 10 529 529 HOH TIP . I 5 HOH B 11 530 530 HOH TIP . I 5 HOH B 12 535 535 HOH TIP . I 5 HOH B 13 539 539 HOH TIP . I 5 HOH B 14 541 541 HOH TIP . I 5 HOH B 15 543 543 HOH TIP . I 5 HOH B 16 544 544 HOH TIP . I 5 HOH B 17 545 545 HOH TIP . I 5 HOH B 18 546 546 HOH TIP . I 5 HOH B 19 550 550 HOH TIP . I 5 HOH B 20 553 553 HOH TIP . I 5 HOH B 21 556 556 HOH TIP . I 5 HOH B 22 558 558 HOH TIP . I 5 HOH B 23 559 559 HOH TIP . I 5 HOH B 24 560 560 HOH TIP . I 5 HOH B 25 563 563 HOH TIP . I 5 HOH B 26 564 564 HOH TIP . I 5 HOH B 27 568 568 HOH TIP . I 5 HOH B 28 574 574 HOH TIP . I 5 HOH B 29 575 575 HOH TIP . I 5 HOH B 30 578 578 HOH TIP . I 5 HOH B 31 582 582 HOH TIP . J 5 HOH C 1 510 510 HOH TIP . J 5 HOH C 2 517 517 HOH TIP . J 5 HOH C 3 524 524 HOH TIP . J 5 HOH C 4 534 534 HOH TIP . J 5 HOH C 5 554 554 HOH TIP . J 5 HOH C 6 555 555 HOH TIP . J 5 HOH C 7 567 567 HOH TIP . J 5 HOH C 8 570 570 HOH TIP . J 5 HOH C 9 573 573 HOH TIP . J 5 HOH C 10 576 576 HOH TIP . J 5 HOH C 11 579 579 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . E 4 -1.759 12.597 59.149 1 14.79 ? PB ADP 601 A 1 HETATM 2 O O1B ADP . . . E 4 -0.248 12.559 59.327 1 48.95 ? O1B ADP 601 A 1 HETATM 3 O O2B ADP . . . E 4 -2.306 11.66 58.182 1 29.63 ? O2B ADP 601 A 1 HETATM 4 O O3B ADP . . . E 4 -2.478 12.496 60.514 1 45.86 ? O3B ADP 601 A 1 HETATM 5 P PA ADP . . . E 4 -1.42 15.124 57.816 1 21.72 ? PA ADP 601 A 1 HETATM 6 O O1A ADP . . . E 4 0.025 15.077 58.184 1 45.24 ? O1A ADP 601 A 1 HETATM 7 O O2A ADP . . . E 4 -2.131 16.403 57.817 1 29.91 ? O2A ADP 601 A 1 HETATM 8 O O3A ADP . . . E 4 -2.149 14.058 58.787 1 50.3 ? O3A ADP 601 A 1 HETATM 9 O O5' ADP . . . E 4 -1.601 14.391 56.387 1 52.81 ? O5' ADP 601 A 1 HETATM 10 C C5' ADP . . . E 4 -2.942 14.32 55.842 1 13.78 ? C5' ADP 601 A 1 HETATM 11 C C4' ADP . . . E 4 -3.134 13.295 54.771 1 5.24 ? C4' ADP 601 A 1 HETATM 12 O O4' ADP . . . E 4 -2.375 13.737 53.598 1 19.26 ? O4' ADP 601 A 1 HETATM 13 C C3' ADP . . . E 4 -2.601 11.909 55.007 1 13.93 ? C3' ADP 601 A 1 HETATM 14 O O3' ADP . . . E 4 -3.591 11.11 55.678 1 31.45 ? O3' ADP 601 A 1 HETATM 15 C C2' ADP . . . E 4 -2.32 11.353 53.561 1 40.3 ? C2' ADP 601 A 1 HETATM 16 O O2' ADP . . . E 4 -3.519 10.758 52.971 1 21.81 ? O2' ADP 601 A 1 HETATM 17 C C1' ADP . . . E 4 -1.886 12.631 52.82 1 21.35 ? C1' ADP 601 A 1 HETATM 18 N N9 ADP . . . E 4 -0.362 12.731 52.72 1 25.79 ? N9 ADP 601 A 1 HETATM 19 C C8 ADP . . . E 4 0.422 13.606 53.33 1 25.17 ? C8 ADP 601 A 1 HETATM 20 N N7 ADP . . . E 4 1.662 13.446 53.057 1 16.34 ? N7 ADP 601 A 1 HETATM 21 C C5 ADP . . . E 4 1.703 12.368 52.189 1 42.76 ? C5 ADP 601 A 1 HETATM 22 C C6 ADP . . . E 4 2.757 11.657 51.487 1 37.26 ? C6 ADP 601 A 1 HETATM 23 N N6 ADP . . . E 4 4.085 11.999 51.591 1 56.66 ? N6 ADP 601 A 1 HETATM 24 N N1 ADP . . . E 4 2.402 10.609 50.685 1 29.52 ? N1 ADP 601 A 1 HETATM 25 C C2 ADP . . . E 4 1.126 10.271 50.576 1 50.06 ? C2 ADP 601 A 1 HETATM 26 N N3 ADP . . . E 4 0.08 10.87 51.192 1 38.7 ? N3 ADP 601 A 1 HETATM 27 C C4 ADP . . . E 4 0.436 11.91 51.982 1 52.77 ? C4 ADP 601 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #