data_1L0V # _model_server_result.job_id bAytCLVtWpiJdbWXbK8h2w _model_server_result.datetime_utc '2024-11-24 20:34:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l0v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":701}' # _entry.id 1L0V # _exptl.entry_id 1L0V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 648.999 _entity.id 10 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description MENAQUINONE-7 _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L0V _cell.length_a 96.59 _cell.length_b 138.09 _cell.length_c 275.25 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L0V _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PISA tetrameric 4 author_and_software_defined_assembly 2 PQS octameric 8 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,I,J,K,L,M,N,O,P,Q 1 1 E,F,G,H,R,S,T,U,V,W,X,Y,Z 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 10 N N N ? 10 O N N ? 10 W N N ? 10 Z N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 45 A HIS 44 1_555 J C8M FAD . A FAD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale2 E NE2 HIS 45 M HIS 44 1_555 S C8M FAD . M FAD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc6 B SG CYS 151 B CYS 151 1_555 M FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc7 B SG CYS 154 B CYS 154 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc8 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc9 B SG CYS 204 B CYS 204 1_555 L FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? metalc ? metalc12 F SG CYS 57 N CYS 57 1_555 T FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc13 F SG CYS 62 N CYS 62 1_555 T FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? metalc ? metalc14 F SG CYS 65 N CYS 65 1_555 T FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc15 F SG CYS 77 N CYS 77 1_555 T FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc16 F SG CYS 148 N CYS 148 1_555 V FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? metalc ? metalc17 F SG CYS 151 N CYS 151 1_555 V FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc18 F SG CYS 154 N CYS 154 1_555 V FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc19 F SG CYS 158 N CYS 158 1_555 U FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc20 F SG CYS 204 N CYS 204 1_555 U FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc21 F SG CYS 210 N CYS 210 1_555 U FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc22 F SG CYS 214 N CYS 214 1_555 V FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C46 H64 O2' _chem_comp.formula_weight 648.999 _chem_comp.id MQ7 _chem_comp.mon_nstd_flag . _chem_comp.name MENAQUINONE-7 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MQ7 doub 433 n n C1 C2 MQ7 sing 434 n n C1 C10 MQ7 sing 435 n n C2 C2M MQ7 sing 436 n n C2 C3 MQ7 doub 437 n n C2M H2M1 MQ7 sing 438 n n C2M H2M2 MQ7 sing 439 n n C2M H2M3 MQ7 sing 440 n n C3 C4 MQ7 sing 441 n n C3 C11 MQ7 sing 442 n n C4 O4 MQ7 doub 443 n n C4 C5 MQ7 sing 444 n n C5 C6 MQ7 doub 445 n y C5 C10 MQ7 sing 446 n y C6 C7 MQ7 sing 447 n y C6 H6 MQ7 sing 448 n n C7 C8 MQ7 doub 449 n y C7 H7 MQ7 sing 450 n n C8 C9 MQ7 sing 451 n y C8 H8 MQ7 sing 452 n n C9 C10 MQ7 doub 453 n y C9 H9 MQ7 sing 454 n n C11 C12 MQ7 sing 455 n n C11 H111 MQ7 sing 456 n n C11 H112 MQ7 sing 457 n n C12 C13 MQ7 doub 458 e n C12 H12 MQ7 sing 459 n n C13 C14 MQ7 sing 460 n n C13 C15 MQ7 sing 461 n n C14 H141 MQ7 sing 462 n n C14 H142 MQ7 sing 463 n n C14 H143 MQ7 sing 464 n n C15 C16 MQ7 sing 465 n n C15 H151 MQ7 sing 466 n n C15 H152 MQ7 sing 467 n n C16 C17 MQ7 sing 468 n n C16 H161 MQ7 sing 469 n n C16 H162 MQ7 sing 470 n n C17 C18 MQ7 doub 471 e n C17 H17 MQ7 sing 472 n n C18 C19 MQ7 sing 473 n n C18 C20 MQ7 sing 474 n n C19 H191 MQ7 sing 475 n n C19 H192 MQ7 sing 476 n n C19 H193 MQ7 sing 477 n n C20 C21 MQ7 sing 478 n n C20 H201 MQ7 sing 479 n n C20 H202 MQ7 sing 480 n n C21 C22 MQ7 sing 481 n n C21 H211 MQ7 sing 482 n n C21 H212 MQ7 sing 483 n n C22 C23 MQ7 doub 484 e n C22 H22 MQ7 sing 485 n n C23 C24 MQ7 sing 486 n n C23 C25 MQ7 sing 487 n n C24 H241 MQ7 sing 488 n n C24 H242 MQ7 sing 489 n n C24 H243 MQ7 sing 490 n n C25 C26 MQ7 sing 491 n n C25 H251 MQ7 sing 492 n n C25 H252 MQ7 sing 493 n n C26 C27 MQ7 sing 494 n n C26 H261 MQ7 sing 495 n n C26 H262 MQ7 sing 496 n n C27 C28 MQ7 doub 497 e n C27 H27 MQ7 sing 498 n n C28 C29 MQ7 sing 499 n n C28 C30 MQ7 sing 500 n n C29 H291 MQ7 sing 501 n n C29 H292 MQ7 sing 502 n n C29 H293 MQ7 sing 503 n n C30 C31 MQ7 sing 504 n n C30 H301 MQ7 sing 505 n n C30 H302 MQ7 sing 506 n n C31 C32 MQ7 sing 507 n n C31 H311 MQ7 sing 508 n n C31 H312 MQ7 sing 509 n n C32 C33 MQ7 doub 510 e n C32 H32 MQ7 sing 511 n n C33 C34 MQ7 sing 512 n n C33 C35 MQ7 sing 513 n n C34 H341 MQ7 sing 514 n n C34 H342 MQ7 sing 515 n n C34 H343 MQ7 sing 516 n n C35 C36 MQ7 sing 517 n n C35 H351 MQ7 sing 518 n n C35 H352 MQ7 sing 519 n n C36 C37 MQ7 sing 520 n n C36 H361 MQ7 sing 521 n n C36 H362 MQ7 sing 522 n n C37 C38 MQ7 doub 523 e n C37 H37 MQ7 sing 524 n n C38 C39 MQ7 sing 525 n n C38 C40 MQ7 sing 526 n n C39 H391 MQ7 sing 527 n n C39 H392 MQ7 sing 528 n n C39 H393 MQ7 sing 529 n n C40 C41 MQ7 sing 530 n n C40 H401 MQ7 sing 531 n n C40 H402 MQ7 sing 532 n n C41 C42 MQ7 sing 533 n n C41 H411 MQ7 sing 534 n n C41 H412 MQ7 sing 535 n n C42 C43 MQ7 doub 536 n n C42 H42 MQ7 sing 537 n n C43 C44 MQ7 sing 538 n n C43 C45 MQ7 sing 539 n n C44 H441 MQ7 sing 540 n n C44 H442 MQ7 sing 541 n n C44 H443 MQ7 sing 542 n n C45 H451 MQ7 sing 543 n n C45 H452 MQ7 sing 544 n n C45 H453 MQ7 sing 545 n n # _atom_sites.entry_id 1L0V _atom_sites.fract_transf_matrix[1][1] 0.010353 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007242 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003633 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 OAA A 1 702 2 OAA OAA . J 6 FAD A 1 703 1 FAD FAD . K 7 FES B 1 244 1 FES FES . L 8 F3S B 1 245 1 F3S F3S . M 9 SF4 B 1 246 1 SF4 FS4 . N 10 MQ7 B 1 701 4 MQ7 MQ7 . O 10 MQ7 D 1 700 3 MQ7 MQ7 . P 11 CE1 D 1 810 5 CE1 CE1 . Q 11 CE1 D 1 710 6 CE1 CE1 . R 5 OAA M 1 802 2 OAA OAA . S 6 FAD M 1 803 1 FAD FAD . T 7 FES N 1 244 1 FES FES . U 8 F3S N 1 245 1 F3S F3S . V 9 SF4 N 1 246 1 SF4 FS4 . W 10 MQ7 N 1 801 4 MQ7 MQ7 . X 11 CE1 O 1 811 7 CE1 CE1 . Y 11 CE1 O 1 812 8 CE1 CE1 . Z 10 MQ7 P 1 800 3 MQ7 MQ7 . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MQ7 . . . N 10 25.472 14.897 -54.614 1 59.69 ? C1 MQ7 701 B 1 HETATM 2 O O1 MQ7 . . . N 10 24.683 14.754 -55.553 1 59.69 ? O1 MQ7 701 B 1 HETATM 3 C C2 MQ7 . . . N 10 26.235 16.197 -54.305 1 59.69 ? C2 MQ7 701 B 1 HETATM 4 C C2M MQ7 . . . N 10 25.91 17.289 -55.292 1 59.69 ? C2M MQ7 701 B 1 HETATM 5 C C3 MQ7 . . . N 10 27.09 16.274 -53.25 1 59.69 ? C3 MQ7 701 B 1 HETATM 6 C C4 MQ7 . . . N 10 27.273 15.067 -52.385 1 59.69 ? C4 MQ7 701 B 1 HETATM 7 O O4 MQ7 . . . N 10 28.074 15.152 -51.4 1 59.69 ? O4 MQ7 701 B 1 HETATM 8 C C5 MQ7 . . . N 10 26.529 13.79 -52.689 1 59.69 ? C5 MQ7 701 B 1 HETATM 9 C C6 MQ7 . . . N 10 26.684 12.638 -51.905 1 59.69 ? C6 MQ7 701 B 1 HETATM 10 C C7 MQ7 . . . N 10 25.957 11.422 -52.222 1 59.69 ? C7 MQ7 701 B 1 HETATM 11 C C8 MQ7 . . . N 10 25.105 11.393 -53.303 1 59.69 ? C8 MQ7 701 B 1 HETATM 12 C C9 MQ7 . . . N 10 24.942 12.551 -54.103 1 59.69 ? C9 MQ7 701 B 1 HETATM 13 C C10 MQ7 . . . N 10 25.645 13.723 -53.788 1 59.69 ? C10 MQ7 701 B 1 HETATM 14 C C11 MQ7 . . . N 10 27.945 17.418 -52.755 1 59.69 ? C11 MQ7 701 B 1 HETATM 15 C C12 MQ7 . . . N 10 29.284 17.554 -52.903 1 59.69 ? C12 MQ7 701 B 1 HETATM 16 C C13 MQ7 . . . N 10 30.182 18.757 -53.31 1 59.69 ? C13 MQ7 701 B 1 HETATM 17 C C14 MQ7 . . . N 10 29.658 19.982 -53.608 1 59.69 ? C14 MQ7 701 B 1 HETATM 18 C C15 MQ7 . . . N 10 31.707 18.589 -53.387 1 59.69 ? C15 MQ7 701 B 1 HETATM 19 C C16 MQ7 . . . N 10 32.325 17.958 -52.123 1 59.69 ? C16 MQ7 701 B 1 HETATM 20 C C17 MQ7 . . . N 10 33.197 16.773 -52.535 1 59.69 ? C17 MQ7 701 B 1 HETATM 21 C C18 MQ7 . . . N 10 34.539 16.723 -52.335 1 59.69 ? C18 MQ7 701 B 1 HETATM 22 C C19 MQ7 . . . N 10 35.338 17.858 -51.671 1 59.69 ? C19 MQ7 701 B 1 HETATM 23 C C20 MQ7 . . . N 10 35.281 15.487 -52.805 1 59.69 ? C20 MQ7 701 B 1 HETATM 24 C C21 MQ7 . . . N 10 35.907 14.703 -51.622 1 59.69 ? C21 MQ7 701 B 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 459 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 24 #