data_1L0V
#
_model_server_result.job_id            5cqnrcA_oAcpYmT5unZIrg 
_model_server_result.datetime_utc      '2024-11-28 13:18:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l0v 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":800}' 
#
_entry.id    1L0V 
#
_exptl.entry_id    1L0V 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              648.999 
_entity.id                          10 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            MENAQUINONE-7 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1L0V 
_cell.length_a            96.59 
_cell.length_b            138.09 
_cell.length_c            275.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L0V 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
PQS octameric 8 software_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q 1 1 
E,F,G,H,R,S,T,U,V,W,X,Y,Z 2 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 10 N N N 
? 10 O N N 
? 10 W N N 
? 10 Z N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 45 A HIS 44 1_555 J C8M FAD . A FAD 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? 
covale ? covale2 E NE2 HIS 45 M HIS 44 1_555 S C8M FAD . M FAD 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? 
metalc ? metalc1 B SG CYS 57 B CYS 57 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc2 B SG CYS 62 B CYS 62 1_555 K FE2 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.225 ? 
metalc ? metalc3 B SG CYS 65 B CYS 65 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc4 B SG CYS 77 B CYS 77 1_555 K FE1 FES . B FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.26 ? 
metalc ? metalc5 B SG CYS 148 B CYS 148 1_555 M FE3 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc6 B SG CYS 151 B CYS 151 1_555 M FE1 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
metalc ? metalc7 B SG CYS 154 B CYS 154 1_555 M FE2 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? 
metalc ? metalc8 B SG CYS 158 B CYS 158 1_555 L FE4 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? 
metalc ? metalc9 B SG CYS 204 B CYS 204 1_555 L FE1 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.227 ? 
metalc ? metalc10 B SG CYS 210 B CYS 210 1_555 L FE3 F3S . B F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? 
metalc ? metalc11 B SG CYS 214 B CYS 214 1_555 M FE4 SF4 . B SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc12 F SG CYS 57 N CYS 57 1_555 T FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc13 F SG CYS 62 N CYS 62 1_555 T FE2 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc14 F SG CYS 65 N CYS 65 1_555 T FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? 
metalc ? metalc15 F SG CYS 77 N CYS 77 1_555 T FE1 FES . N FES 244 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc16 F SG CYS 148 N CYS 148 1_555 V FE3 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.243 ? 
metalc ? metalc17 F SG CYS 151 N CYS 151 1_555 V FE1 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc18 F SG CYS 154 N CYS 154 1_555 V FE2 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? 
metalc ? metalc19 F SG CYS 158 N CYS 158 1_555 U FE4 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? 
metalc ? metalc20 F SG CYS 204 N CYS 204 1_555 U FE1 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? 
metalc ? metalc21 F SG CYS 210 N CYS 210 1_555 U FE3 F3S . N F3S 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? 
metalc ? metalc22 F SG CYS 214 N CYS 214 1_555 V FE4 SF4 . N SF4 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? 
#
_chem_comp.formula           'C46 H64 O2' 
_chem_comp.formula_weight    648.999 
_chem_comp.id                MQ7 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              MENAQUINONE-7 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 MQ7 doub 433 n n 
C1 C2 MQ7 sing 434 n n 
C1 C10 MQ7 sing 435 n n 
C2 C2M MQ7 sing 436 n n 
C2 C3 MQ7 doub 437 n n 
C2M H2M1 MQ7 sing 438 n n 
C2M H2M2 MQ7 sing 439 n n 
C2M H2M3 MQ7 sing 440 n n 
C3 C4 MQ7 sing 441 n n 
C3 C11 MQ7 sing 442 n n 
C4 O4 MQ7 doub 443 n n 
C4 C5 MQ7 sing 444 n n 
C5 C6 MQ7 doub 445 n y 
C5 C10 MQ7 sing 446 n y 
C6 C7 MQ7 sing 447 n y 
C6 H6 MQ7 sing 448 n n 
C7 C8 MQ7 doub 449 n y 
C7 H7 MQ7 sing 450 n n 
C8 C9 MQ7 sing 451 n y 
C8 H8 MQ7 sing 452 n n 
C9 C10 MQ7 doub 453 n y 
C9 H9 MQ7 sing 454 n n 
C11 C12 MQ7 sing 455 n n 
C11 H111 MQ7 sing 456 n n 
C11 H112 MQ7 sing 457 n n 
C12 C13 MQ7 doub 458 e n 
C12 H12 MQ7 sing 459 n n 
C13 C14 MQ7 sing 460 n n 
C13 C15 MQ7 sing 461 n n 
C14 H141 MQ7 sing 462 n n 
C14 H142 MQ7 sing 463 n n 
C14 H143 MQ7 sing 464 n n 
C15 C16 MQ7 sing 465 n n 
C15 H151 MQ7 sing 466 n n 
C15 H152 MQ7 sing 467 n n 
C16 C17 MQ7 sing 468 n n 
C16 H161 MQ7 sing 469 n n 
C16 H162 MQ7 sing 470 n n 
C17 C18 MQ7 doub 471 e n 
C17 H17 MQ7 sing 472 n n 
C18 C19 MQ7 sing 473 n n 
C18 C20 MQ7 sing 474 n n 
C19 H191 MQ7 sing 475 n n 
C19 H192 MQ7 sing 476 n n 
C19 H193 MQ7 sing 477 n n 
C20 C21 MQ7 sing 478 n n 
C20 H201 MQ7 sing 479 n n 
C20 H202 MQ7 sing 480 n n 
C21 C22 MQ7 sing 481 n n 
C21 H211 MQ7 sing 482 n n 
C21 H212 MQ7 sing 483 n n 
C22 C23 MQ7 doub 484 e n 
C22 H22 MQ7 sing 485 n n 
C23 C24 MQ7 sing 486 n n 
C23 C25 MQ7 sing 487 n n 
C24 H241 MQ7 sing 488 n n 
C24 H242 MQ7 sing 489 n n 
C24 H243 MQ7 sing 490 n n 
C25 C26 MQ7 sing 491 n n 
C25 H251 MQ7 sing 492 n n 
C25 H252 MQ7 sing 493 n n 
C26 C27 MQ7 sing 494 n n 
C26 H261 MQ7 sing 495 n n 
C26 H262 MQ7 sing 496 n n 
C27 C28 MQ7 doub 497 e n 
C27 H27 MQ7 sing 498 n n 
C28 C29 MQ7 sing 499 n n 
C28 C30 MQ7 sing 500 n n 
C29 H291 MQ7 sing 501 n n 
C29 H292 MQ7 sing 502 n n 
C29 H293 MQ7 sing 503 n n 
C30 C31 MQ7 sing 504 n n 
C30 H301 MQ7 sing 505 n n 
C30 H302 MQ7 sing 506 n n 
C31 C32 MQ7 sing 507 n n 
C31 H311 MQ7 sing 508 n n 
C31 H312 MQ7 sing 509 n n 
C32 C33 MQ7 doub 510 e n 
C32 H32 MQ7 sing 511 n n 
C33 C34 MQ7 sing 512 n n 
C33 C35 MQ7 sing 513 n n 
C34 H341 MQ7 sing 514 n n 
C34 H342 MQ7 sing 515 n n 
C34 H343 MQ7 sing 516 n n 
C35 C36 MQ7 sing 517 n n 
C35 H351 MQ7 sing 518 n n 
C35 H352 MQ7 sing 519 n n 
C36 C37 MQ7 sing 520 n n 
C36 H361 MQ7 sing 521 n n 
C36 H362 MQ7 sing 522 n n 
C37 C38 MQ7 doub 523 e n 
C37 H37 MQ7 sing 524 n n 
C38 C39 MQ7 sing 525 n n 
C38 C40 MQ7 sing 526 n n 
C39 H391 MQ7 sing 527 n n 
C39 H392 MQ7 sing 528 n n 
C39 H393 MQ7 sing 529 n n 
C40 C41 MQ7 sing 530 n n 
C40 H401 MQ7 sing 531 n n 
C40 H402 MQ7 sing 532 n n 
C41 C42 MQ7 sing 533 n n 
C41 H411 MQ7 sing 534 n n 
C41 H412 MQ7 sing 535 n n 
C42 C43 MQ7 doub 536 n n 
C42 H42 MQ7 sing 537 n n 
C43 C44 MQ7 sing 538 n n 
C43 C45 MQ7 sing 539 n n 
C44 H441 MQ7 sing 540 n n 
C44 H442 MQ7 sing 541 n n 
C44 H443 MQ7 sing 542 n n 
C45 H451 MQ7 sing 543 n n 
C45 H452 MQ7 sing 544 n n 
C45 H453 MQ7 sing 545 n n 
#
_atom_sites.entry_id                     1L0V 
_atom_sites.fract_transf_matrix[1][1]    0.010353 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007242 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003633 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 OAA A 1 702 2 OAA OAA . 
J 6 FAD A 1 703 1 FAD FAD . 
K 7 FES B 1 244 1 FES FES . 
L 8 F3S B 1 245 1 F3S F3S . 
M 9 SF4 B 1 246 1 SF4 FS4 . 
N 10 MQ7 B 1 701 4 MQ7 MQ7 . 
O 10 MQ7 D 1 700 3 MQ7 MQ7 . 
P 11 CE1 D 1 810 5 CE1 CE1 . 
Q 11 CE1 D 1 710 6 CE1 CE1 . 
R 5 OAA M 1 802 2 OAA OAA . 
S 6 FAD M 1 803 1 FAD FAD . 
T 7 FES N 1 244 1 FES FES . 
U 8 F3S N 1 245 1 F3S F3S . 
V 9 SF4 N 1 246 1 SF4 FS4 . 
W 10 MQ7 N 1 801 4 MQ7 MQ7 . 
X 11 CE1 O 1 811 7 CE1 CE1 . 
Y 11 CE1 O 1 812 8 CE1 CE1 . 
Z 10 MQ7 P 1 800 3 MQ7 MQ7 . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MQ7 . . . Z 10 48.183 -21.279 -77.509 1 95.58 ? C1 MQ7 800 P 1 
HETATM 2 O O1 MQ7 . . . Z 10 47.615 -21.417 -76.418 1 95.58 ? O1 MQ7 800 P 1 
HETATM 3 C C2 MQ7 . . . Z 10 47.821 -22.095 -78.754 1 95.58 ? C2 MQ7 800 P 1 
HETATM 4 C C2M MQ7 . . . Z 10 46.693 -23.072 -78.467 1 95.58 ? C2M MQ7 800 P 1 
HETATM 5 C C3 MQ7 . . . Z 10 48.476 -21.902 -79.928 1 95.58 ? C3 MQ7 800 P 1 
HETATM 6 C C4 MQ7 . . . Z 10 49.556 -20.879 -79.977 1 95.58 ? C4 MQ7 800 P 1 
HETATM 7 O O4 MQ7 . . . Z 10 50.152 -20.72 -81.079 1 95.58 ? O4 MQ7 800 P 1 
HETATM 8 C C5 MQ7 . . . Z 10 49.92 -20.068 -78.752 1 95.58 ? C5 MQ7 800 P 1 
HETATM 9 C C6 MQ7 . . . Z 10 50.933 -19.096 -78.764 1 95.58 ? C6 MQ7 800 P 1 
HETATM 10 C C7 MQ7 . . . Z 10 51.267 -18.327 -77.571 1 95.58 ? C7 MQ7 800 P 1 
HETATM 11 C C8 MQ7 . . . Z 10 50.586 -18.55 -76.408 1 95.58 ? C8 MQ7 800 P 1 
HETATM 12 C C9 MQ7 . . . Z 10 49.561 -19.529 -76.383 1 95.58 ? C9 MQ7 800 P 1 
HETATM 13 C C10 MQ7 . . . Z 10 49.244 -20.27 -77.547 1 95.58 ? C10 MQ7 800 P 1 
HETATM 14 C C11 MQ7 . . . Z 10 48.302 -22.575 -81.279 1 95.58 ? C11 MQ7 800 P 1 
HETATM 15 C C12 MQ7 . . . Z 10 47.839 -22.049 -82.427 1 95.58 ? C12 MQ7 800 P 1 
HETATM 16 C C13 MQ7 . . . Z 10 47.772 -22.632 -83.845 1 95.58 ? C13 MQ7 800 P 1 
HETATM 17 C C14 MQ7 . . . Z 10 48.223 -23.889 -84.126 1 95.58 ? C14 MQ7 800 P 1 
HETATM 18 C C15 MQ7 . . . Z 10 47.201 -21.782 -84.979 1 95.58 ? C15 MQ7 800 P 1 
HETATM 19 C C16 MQ7 . . . Z 10 45.721 -22.056 -85.29 1 95.58 ? C16 MQ7 800 P 1 
HETATM 20 C C17 MQ7 . . . Z 10 45.406 -21.41 -86.632 1 95.58 ? C17 MQ7 800 P 1 
HETATM 21 C C18 MQ7 . . . Z 10 44.288 -20.681 -86.901 1 95.58 ? C18 MQ7 800 P 1 
HETATM 22 C C19 MQ7 . . . Z 10 43.174 -20.405 -85.89 1 95.58 ? C19 MQ7 800 P 1 
HETATM 23 C C20 MQ7 . . . Z 10 44.135 -20.107 -88.282 1 95.58 ? C20 MQ7 800 P 1 
HETATM 24 C C21 MQ7 . . . Z 10 44.988 -18.825 -88.434 1 95.58 ? C21 MQ7 800 P 1 
#
_model_server_stats.io_time_ms              28 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    192 
_model_server_stats.query_time_ms           575 
_model_server_stats.encode_time_ms          11 
_model_server_stats.element_count           24 
#