data_1L1E
#
_model_server_result.job_id            8ILn4d9RvgkpjP2U7XRM7A 
_model_server_result.datetime_utc      '2024-11-17 15:28:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l1e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":900}' 
#
_entry.id    1L1E 
#
_exptl.entry_id    1L1E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1L1E 
_cell.length_a            45.34 
_cell.length_b            45.34 
_cell.length_c            446.02 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L1E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 280 n n 
N HN1 SAH sing 281 n n 
N HN2 SAH sing 282 n n 
CA CB SAH sing 283 n n 
CA C SAH sing 284 n n 
CA HA SAH sing 285 n n 
CB CG SAH sing 286 n n 
CB HB1 SAH sing 287 n n 
CB HB2 SAH sing 288 n n 
CG SD SAH sing 289 n n 
CG HG1 SAH sing 290 n n 
CG HG2 SAH sing 291 n n 
SD C5' SAH sing 292 n n 
C O SAH doub 293 n n 
C OXT SAH sing 294 n n 
OXT HXT SAH sing 295 n n 
C5' C4' SAH sing 296 n n 
C5' "H5'1" SAH sing 297 n n 
C5' "H5'2" SAH sing 298 n n 
C4' O4' SAH sing 299 n n 
C4' C3' SAH sing 300 n n 
C4' H4' SAH sing 301 n n 
O4' C1' SAH sing 302 n n 
C3' O3' SAH sing 303 n n 
C3' C2' SAH sing 304 n n 
C3' H3' SAH sing 305 n n 
O3' HO3' SAH sing 306 n n 
C2' O2' SAH sing 307 n n 
C2' C1' SAH sing 308 n n 
C2' H2' SAH sing 309 n n 
O2' HO2' SAH sing 310 n n 
C1' N9 SAH sing 311 n n 
C1' H1' SAH sing 312 n n 
N9 C8 SAH sing 313 n y 
N9 C4 SAH sing 314 n y 
C8 N7 SAH doub 315 n y 
C8 H8 SAH sing 316 n n 
N7 C5 SAH sing 317 n y 
C5 C6 SAH sing 318 n y 
C5 C4 SAH doub 319 n y 
C6 N6 SAH sing 320 n n 
C6 N1 SAH doub 321 n y 
N6 HN61 SAH sing 322 n n 
N6 HN62 SAH sing 323 n n 
N1 C2 SAH sing 324 n y 
C2 N3 SAH doub 325 n y 
C2 H2 SAH sing 326 n n 
N3 C4 SAH sing 327 n y 
#
_atom_sites.entry_id                     1L1E 
_atom_sites.fract_transf_matrix[1][1]    0.022056 
_atom_sites.fract_transf_matrix[1][2]    0.012734 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.025468 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002242 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CO3 A 1 903 903 CO3 CO3 . 
D 3 SAH A 1 900 900 SAH SAH . 
E 2 CO3 B 1 904 904 CO3 CO3 . 
F 3 SAH B 1 901 901 SAH SAH . 
G 4 HOH A 1 904 1 HOH TIP . 
G 4 HOH A 2 905 2 HOH TIP . 
G 4 HOH A 3 906 4 HOH TIP . 
G 4 HOH A 4 907 5 HOH TIP . 
G 4 HOH A 5 908 6 HOH TIP . 
G 4 HOH A 6 909 7 HOH TIP . 
G 4 HOH A 7 910 9 HOH TIP . 
G 4 HOH A 8 911 10 HOH TIP . 
G 4 HOH A 9 912 11 HOH TIP . 
G 4 HOH A 10 913 12 HOH TIP . 
G 4 HOH A 11 914 14 HOH TIP . 
G 4 HOH A 12 915 15 HOH TIP . 
G 4 HOH A 13 916 17 HOH TIP . 
G 4 HOH A 14 917 18 HOH TIP . 
G 4 HOH A 15 918 21 HOH TIP . 
G 4 HOH A 16 919 22 HOH TIP . 
G 4 HOH A 17 920 23 HOH TIP . 
G 4 HOH A 18 921 24 HOH TIP . 
G 4 HOH A 19 922 26 HOH TIP . 
G 4 HOH A 20 923 27 HOH TIP . 
G 4 HOH A 21 924 28 HOH TIP . 
G 4 HOH A 22 925 29 HOH TIP . 
G 4 HOH A 23 926 31 HOH TIP . 
G 4 HOH A 24 927 33 HOH TIP . 
G 4 HOH A 25 928 36 HOH TIP . 
G 4 HOH A 26 929 37 HOH TIP . 
G 4 HOH A 27 930 38 HOH TIP . 
G 4 HOH A 28 931 39 HOH TIP . 
G 4 HOH A 29 932 41 HOH TIP . 
G 4 HOH A 30 933 42 HOH TIP . 
G 4 HOH A 31 934 45 HOH TIP . 
G 4 HOH A 32 935 50 HOH TIP . 
G 4 HOH A 33 936 51 HOH TIP . 
G 4 HOH A 34 937 52 HOH TIP . 
G 4 HOH A 35 938 54 HOH TIP . 
G 4 HOH A 36 939 58 HOH TIP . 
G 4 HOH A 37 940 59 HOH TIP . 
G 4 HOH A 38 941 60 HOH TIP . 
G 4 HOH A 39 942 62 HOH TIP . 
G 4 HOH A 40 943 63 HOH TIP . 
G 4 HOH A 41 944 64 HOH TIP . 
G 4 HOH A 42 945 65 HOH TIP . 
G 4 HOH A 43 946 66 HOH TIP . 
G 4 HOH A 44 947 67 HOH TIP . 
G 4 HOH A 45 948 69 HOH TIP . 
G 4 HOH A 46 949 70 HOH TIP . 
G 4 HOH A 47 950 72 HOH TIP . 
G 4 HOH A 48 951 73 HOH TIP . 
G 4 HOH A 49 952 74 HOH TIP . 
G 4 HOH A 50 953 75 HOH TIP . 
G 4 HOH A 51 954 76 HOH TIP . 
G 4 HOH A 52 955 77 HOH TIP . 
G 4 HOH A 53 956 78 HOH TIP . 
G 4 HOH A 54 957 80 HOH TIP . 
G 4 HOH A 55 958 84 HOH TIP . 
G 4 HOH A 56 959 86 HOH TIP . 
G 4 HOH A 57 960 89 HOH TIP . 
G 4 HOH A 58 961 91 HOH TIP . 
G 4 HOH A 59 962 92 HOH TIP . 
G 4 HOH A 60 963 95 HOH TIP . 
G 4 HOH A 61 964 96 HOH TIP . 
G 4 HOH A 62 965 97 HOH TIP . 
G 4 HOH A 63 966 98 HOH TIP . 
G 4 HOH A 64 967 99 HOH TIP . 
G 4 HOH A 65 968 102 HOH TIP . 
G 4 HOH A 66 969 104 HOH TIP . 
G 4 HOH A 67 970 105 HOH TIP . 
G 4 HOH A 68 971 106 HOH TIP . 
G 4 HOH A 69 972 107 HOH TIP . 
G 4 HOH A 70 973 108 HOH TIP . 
G 4 HOH A 71 974 111 HOH TIP . 
G 4 HOH A 72 975 113 HOH TIP . 
G 4 HOH A 73 976 118 HOH TIP . 
G 4 HOH A 74 977 120 HOH TIP . 
G 4 HOH A 75 978 121 HOH TIP . 
G 4 HOH A 76 979 122 HOH TIP . 
G 4 HOH A 77 980 123 HOH TIP . 
G 4 HOH A 78 981 125 HOH TIP . 
G 4 HOH A 79 982 126 HOH TIP . 
G 4 HOH A 80 983 129 HOH TIP . 
G 4 HOH A 81 984 130 HOH TIP . 
G 4 HOH A 82 985 132 HOH TIP . 
G 4 HOH A 83 986 133 HOH TIP . 
G 4 HOH A 84 987 136 HOH TIP . 
G 4 HOH A 85 988 137 HOH TIP . 
G 4 HOH A 86 989 139 HOH TIP . 
G 4 HOH A 87 990 141 HOH TIP . 
G 4 HOH A 88 991 142 HOH TIP . 
G 4 HOH A 89 992 143 HOH TIP . 
G 4 HOH A 90 993 144 HOH TIP . 
G 4 HOH A 91 994 145 HOH TIP . 
G 4 HOH A 92 995 146 HOH TIP . 
G 4 HOH A 93 996 147 HOH TIP . 
G 4 HOH A 94 997 148 HOH TIP . 
G 4 HOH A 95 998 150 HOH TIP . 
G 4 HOH A 96 999 156 HOH TIP . 
G 4 HOH A 97 1000 157 HOH TIP . 
G 4 HOH A 98 1001 159 HOH TIP . 
G 4 HOH A 99 1002 160 HOH TIP . 
G 4 HOH A 100 1003 162 HOH TIP . 
G 4 HOH A 101 1004 164 HOH TIP . 
G 4 HOH A 102 1005 166 HOH TIP . 
G 4 HOH A 103 1006 171 HOH TIP . 
G 4 HOH A 104 1007 173 HOH TIP . 
G 4 HOH A 105 1008 175 HOH TIP . 
G 4 HOH A 106 1009 177 HOH TIP . 
G 4 HOH A 107 1010 178 HOH TIP . 
G 4 HOH A 108 1011 180 HOH TIP . 
G 4 HOH A 109 1012 181 HOH TIP . 
G 4 HOH A 110 1013 182 HOH TIP . 
G 4 HOH A 111 1014 184 HOH TIP . 
G 4 HOH A 112 1015 185 HOH TIP . 
G 4 HOH A 113 1016 186 HOH TIP . 
G 4 HOH A 114 1017 188 HOH TIP . 
G 4 HOH A 115 1018 189 HOH TIP . 
G 4 HOH A 116 1019 191 HOH TIP . 
G 4 HOH A 117 1020 192 HOH TIP . 
G 4 HOH A 118 1021 193 HOH TIP . 
G 4 HOH A 119 1022 194 HOH TIP . 
G 4 HOH A 120 1023 197 HOH TIP . 
G 4 HOH A 121 1024 198 HOH TIP . 
H 4 HOH B 1 905 3 HOH TIP . 
H 4 HOH B 2 906 8 HOH TIP . 
H 4 HOH B 3 907 13 HOH TIP . 
H 4 HOH B 4 908 16 HOH TIP . 
H 4 HOH B 5 909 19 HOH TIP . 
H 4 HOH B 6 910 20 HOH TIP . 
H 4 HOH B 7 911 25 HOH TIP . 
H 4 HOH B 8 912 30 HOH TIP . 
H 4 HOH B 9 913 32 HOH TIP . 
H 4 HOH B 10 914 34 HOH TIP . 
H 4 HOH B 11 915 35 HOH TIP . 
H 4 HOH B 12 916 40 HOH TIP . 
H 4 HOH B 13 917 43 HOH TIP . 
H 4 HOH B 14 918 44 HOH TIP . 
H 4 HOH B 15 919 46 HOH TIP . 
H 4 HOH B 16 920 47 HOH TIP . 
H 4 HOH B 17 921 48 HOH TIP . 
H 4 HOH B 18 922 49 HOH TIP . 
H 4 HOH B 19 923 53 HOH TIP . 
H 4 HOH B 20 924 55 HOH TIP . 
H 4 HOH B 21 925 56 HOH TIP . 
H 4 HOH B 22 926 57 HOH TIP . 
H 4 HOH B 23 927 61 HOH TIP . 
H 4 HOH B 24 928 68 HOH TIP . 
H 4 HOH B 25 929 71 HOH TIP . 
H 4 HOH B 26 930 79 HOH TIP . 
H 4 HOH B 27 931 81 HOH TIP . 
H 4 HOH B 28 932 82 HOH TIP . 
H 4 HOH B 29 933 83 HOH TIP . 
H 4 HOH B 30 934 85 HOH TIP . 
H 4 HOH B 31 935 87 HOH TIP . 
H 4 HOH B 32 936 88 HOH TIP . 
H 4 HOH B 33 937 90 HOH TIP . 
H 4 HOH B 34 938 93 HOH TIP . 
H 4 HOH B 35 939 94 HOH TIP . 
H 4 HOH B 36 940 100 HOH TIP . 
H 4 HOH B 37 941 101 HOH TIP . 
H 4 HOH B 38 942 103 HOH TIP . 
H 4 HOH B 39 943 109 HOH TIP . 
H 4 HOH B 40 944 110 HOH TIP . 
H 4 HOH B 41 945 112 HOH TIP . 
H 4 HOH B 42 946 114 HOH TIP . 
H 4 HOH B 43 947 115 HOH TIP . 
H 4 HOH B 44 948 116 HOH TIP . 
H 4 HOH B 45 949 117 HOH TIP . 
H 4 HOH B 46 950 119 HOH TIP . 
H 4 HOH B 47 951 124 HOH TIP . 
H 4 HOH B 48 952 127 HOH TIP . 
H 4 HOH B 49 953 128 HOH TIP . 
H 4 HOH B 50 954 131 HOH TIP . 
H 4 HOH B 51 955 134 HOH TIP . 
H 4 HOH B 52 956 135 HOH TIP . 
H 4 HOH B 53 957 138 HOH TIP . 
H 4 HOH B 54 958 140 HOH TIP . 
H 4 HOH B 55 959 149 HOH TIP . 
H 4 HOH B 56 960 151 HOH TIP . 
H 4 HOH B 57 961 152 HOH TIP . 
H 4 HOH B 58 962 153 HOH TIP . 
H 4 HOH B 59 963 154 HOH TIP . 
H 4 HOH B 60 964 155 HOH TIP . 
H 4 HOH B 61 965 158 HOH TIP . 
H 4 HOH B 62 966 161 HOH TIP . 
H 4 HOH B 63 967 163 HOH TIP . 
H 4 HOH B 64 968 165 HOH TIP . 
H 4 HOH B 65 969 167 HOH TIP . 
H 4 HOH B 66 970 168 HOH TIP . 
H 4 HOH B 67 971 169 HOH TIP . 
H 4 HOH B 68 972 170 HOH TIP . 
H 4 HOH B 69 973 172 HOH TIP . 
H 4 HOH B 70 974 174 HOH TIP . 
H 4 HOH B 71 975 176 HOH TIP . 
H 4 HOH B 72 976 179 HOH TIP . 
H 4 HOH B 73 977 183 HOH TIP . 
H 4 HOH B 74 978 187 HOH TIP . 
H 4 HOH B 75 979 190 HOH TIP . 
H 4 HOH B 76 980 195 HOH TIP . 
H 4 HOH B 77 981 196 HOH TIP . 
H 4 HOH B 78 982 199 HOH TIP . 
H 4 HOH B 79 983 200 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 3 -3.32 15.094 64.975 1 16.83 ? N SAH 900 A 1 
HETATM 2 C CA SAH . . . D 3 -3.003 14.204 63.857 1 18.42 ? CA SAH 900 A 1 
HETATM 3 C CB SAH . . . D 3 -2.922 14.997 62.534 1 18.35 ? CB SAH 900 A 1 
HETATM 4 C CG SAH . . . D 3 -1.938 16.17 62.498 1 17.75 ? CG SAH 900 A 1 
HETATM 5 S SD SAH . . . D 3 -1.902 17.036 60.921 1 20.84 ? SD SAH 900 A 1 
HETATM 6 C C SAH . . . D 3 -1.666 13.483 64.099 1 17.57 ? C SAH 900 A 1 
HETATM 7 O O SAH . . . D 3 -1.069 13.707 65.156 1 19.2 ? O SAH 900 A 1 
HETATM 8 O OXT SAH . . . D 3 -1.225 12.731 63.218 1 21.09 ? OXT SAH 900 A 1 
HETATM 9 C C5' SAH . . . D 3 -2.994 18.455 61.276 1 18.94 ? C5' SAH 900 A 1 
HETATM 10 C C4' SAH . . . D 3 -4.474 18.102 61.47 1 17.12 ? C4' SAH 900 A 1 
HETATM 11 O O4' SAH . . . D 3 -5.242 19.214 62.014 1 18.47 ? O4' SAH 900 A 1 
HETATM 12 C C3' SAH . . . D 3 -5.184 17.729 60.171 1 20.48 ? C3' SAH 900 A 1 
HETATM 13 O O3' SAH . . . D 3 -6.119 16.669 60.475 1 15.59 ? O3' SAH 900 A 1 
HETATM 14 C C2' SAH . . . D 3 -5.892 18.998 59.782 1 18.4 ? C2' SAH 900 A 1 
HETATM 15 O O2' SAH . . . D 3 -6.938 18.761 58.836 1 18.97 ? O2' SAH 900 A 1 
HETATM 16 C C1' SAH . . . D 3 -6.354 19.485 61.122 1 18.69 ? C1' SAH 900 A 1 
HETATM 17 N N9 SAH . . . D 3 -6.719 20.918 61.167 1 20.18 ? N9 SAH 900 A 1 
HETATM 18 C C8 SAH . . . D 3 -6.051 22.022 60.742 1 22.28 ? C8 SAH 900 A 1 
HETATM 19 N N7 SAH . . . D 3 -6.621 23.167 60.925 1 20.55 ? N7 SAH 900 A 1 
HETATM 20 C C5 SAH . . . D 3 -7.813 22.813 61.545 1 21.83 ? C5 SAH 900 A 1 
HETATM 21 C C6 SAH . . . D 3 -8.931 23.564 62.036 1 24.16 ? C6 SAH 900 A 1 
HETATM 22 N N6 SAH . . . D 3 -9 24.902 61.963 1 22.68 ? N6 SAH 900 A 1 
HETATM 23 N N1 SAH . . . D 3 -9.976 22.865 62.61 1 23.63 ? N1 SAH 900 A 1 
HETATM 24 C C2 SAH . . . D 3 -9.912 21.513 62.691 1 25 ? C2 SAH 900 A 1 
HETATM 25 N N3 SAH . . . D 3 -8.917 20.706 62.268 1 21.53 ? N3 SAH 900 A 1 
HETATM 26 C C4 SAH . . . D 3 -7.889 21.428 61.698 1 21.22 ? C4 SAH 900 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           306 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           26 
#