data_1L2G # _model_server_result.job_id ara-HmSQIT0lzbXGJEqrMQ _model_server_result.datetime_utc '2024-10-13 19:20:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":430}' # _entry.id 1L2G # _exptl.entry_id 1L2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L2G _cell.length_a 131.416 _cell.length_b 131.416 _cell.length_c 83.265 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 75 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA octameric 8 software_defined_assembly 3 PISA octameric 8 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F 1 1 C,D,G,H 2 1 A,B,E,F 3 1,2,4,6 C,D,G,H 4 1,3,5,7 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_575 -x,-y+2,z -1 0 0 0 -1 0 0 0 1 0 262.832 0 3 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 131.416 131.416 0 4 'crystal symmetry operation' 3_665 -y+1,x+1,z 0 -1 0 1 0 0 0 0 1 131.416 131.416 0 5 'crystal symmetry operation' 3_655 -y+1,x,z 0 -1 0 1 0 0 0 0 1 131.416 0 0 6 'crystal symmetry operation' 4_465 y-1,-x+1,z 0 1 0 -1 0 0 0 0 1 -131.416 131.416 0 7 'crystal symmetry operation' 4_565 y,-x+1,z 0 1 0 -1 0 0 0 0 1 0 131.416 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 68 A CYS 66 1_555 A SG CYS 191 A CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf2 A SG CYS 108 A CYS 106 1_555 A SG CYS 204 A CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf3 A SG CYS 120 A CYS 118 1_555 A SG CYS 129 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 B SG CYS 68 B CYS 66 1_555 B SG CYS 191 B CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 B SG CYS 108 B CYS 106 1_555 B SG CYS 204 B CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf6 B SG CYS 120 B CYS 118 1_555 B SG CYS 129 B CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf7 C SG CYS 68 D CYS 66 1_555 C SG CYS 191 D CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf8 C SG CYS 108 D CYS 106 1_555 C SG CYS 204 D CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf9 C SG CYS 120 D CYS 118 1_555 C SG CYS 129 D CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf10 D SG CYS 68 C CYS 66 1_555 D SG CYS 191 C CYS 189 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? disulf ? disulf11 D SG CYS 108 C CYS 106 1_555 D SG CYS 204 C CYS 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? disulf ? disulf12 D SG CYS 120 C CYS 118 1_555 D SG CYS 129 C CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? covale ? covale1 A ND2 ASN 96 A ASN 94 1_555 E C1 NAG . A NAG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.505 ? covale ? covale2 B ND2 ASN 96 B ASN 94 1_555 F C1 NAG . B NAG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.489 ? covale ? covale3 C ND2 ASN 96 D ASN 94 1_555 G C1 NAG . D NAG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale4 D ND2 ASN 96 C ASN 94 1_555 H C1 NAG . C NAG 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.487 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 235 n n C1 O1 NAG sing 236 n n C1 O5 NAG sing 237 n n C1 H1 NAG sing 238 n n C2 C3 NAG sing 239 n n C2 N2 NAG sing 240 n n C2 H2 NAG sing 241 n n C3 C4 NAG sing 242 n n C3 O3 NAG sing 243 n n C3 H3 NAG sing 244 n n C4 C5 NAG sing 245 n n C4 O4 NAG sing 246 n n C4 H4 NAG sing 247 n n C5 C6 NAG sing 248 n n C5 O5 NAG sing 249 n n C5 H5 NAG sing 250 n n C6 O6 NAG sing 251 n n C6 H61 NAG sing 252 n n C6 H62 NAG sing 253 n n C7 C8 NAG sing 254 n n C7 N2 NAG sing 255 n n C7 O7 NAG doub 256 n n C8 H81 NAG sing 257 n n C8 H82 NAG sing 258 n n C8 H83 NAG sing 259 n n N2 HN2 NAG sing 260 n n O1 HO1 NAG sing 261 n n O3 HO3 NAG sing 262 n n O4 HO4 NAG sing 263 n n O6 HO6 NAG sing 264 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1L2G _atom_sites.fract_transf_matrix[1][1] 0.007609 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007609 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01201 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAG A 1 430 430 NAG NAG . F 2 NAG B 1 430 430 NAG NAG . G 2 NAG D 1 430 430 NAG NAG . H 2 NAG C 1 430 430 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 2 -16.59 93.275 71.821 0.5 61.48 ? C1 NAG 430 A 1 HETATM 2 C C2 NAG . . . E 2 -17.647 93.489 72.884 0.5 60.76 ? C2 NAG 430 A 1 HETATM 3 C C3 NAG . . . E 2 -19.011 93.153 72.282 0.5 61.56 ? C3 NAG 430 A 1 HETATM 4 C C4 NAG . . . E 2 -19.242 93.902 70.959 0.5 61.07 ? C4 NAG 430 A 1 HETATM 5 C C5 NAG . . . E 2 -18.032 93.817 70.02 0.5 60.48 ? C5 NAG 430 A 1 HETATM 6 C C6 NAG . . . E 2 -18.154 94.765 68.842 0.5 57.69 ? C6 NAG 430 A 1 HETATM 7 C C7 NAG . . . E 2 -16.219 92.007 74.149 0.5 54.85 ? C7 NAG 430 A 1 HETATM 8 C C8 NAG . . . E 2 -15.25 92.546 75.182 0.5 48.54 ? C8 NAG 430 A 1 HETATM 9 N N2 NAG . . . E 2 -17.384 92.632 74.024 0.5 56.82 ? N2 NAG 430 A 1 HETATM 10 O O3 NAG . . . E 2 -20.029 93.511 73.207 0.5 63.81 ? O3 NAG 430 A 1 HETATM 11 O O4 NAG . . . E 2 -20.362 93.343 70.298 0.5 66.33 ? O4 NAG 430 A 1 HETATM 12 O O5 NAG . . . E 2 -16.823 94.158 70.725 0.5 59.39 ? O5 NAG 430 A 1 HETATM 13 O O6 NAG . . . E 2 -19.081 95.808 69.114 0.5 64.2 ? O6 NAG 430 A 1 HETATM 14 O O7 NAG . . . E 2 -15.909 91.029 73.466 0.5 54.99 ? O7 NAG 430 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 545 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #