data_1L2O # _model_server_result.job_id A4pmOEG0RLKVU3SfKEhBeA _model_server_result.datetime_utc '2024-10-18 16:21:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 1L2O # _exptl.entry_id 1L2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.6 _cell.angle_beta 96.3 _cell.angle_gamma 101.5 _cell.entry_id 1L2O _cell.length_a 51.8 _cell.length_b 57 _cell.length_c 150.5 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 693 A CYS 693 1_555 E CP9 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? covale ? covale2 A NZ LYS 705 A LYS 705 1_555 E C13 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale3 A CE LYS 705 A LYS 705 1_555 E C13 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc1 A OG1 THR 183 A THR 183 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 A OG SER 241 A SER 241 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 D MG MG . A MG 903 1_555 F O2B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc4 D MG MG . A MG 903 1_555 F O3B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc5 D MG MG . A MG 903 1_555 I O HOH . A HOH 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 D MG MG . A MG 903 1_555 I O HOH . A HOH 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 B OD1 ASP 28 B ASP 28 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 B OD2 ASP 30 B ASP 30 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc9 B OD1 ASP 30 B ASP 30 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 B N ARG 31 B ARG 31 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc11 B N ASP 32 B ASP 32 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc12 B OD1 ASP 32 B ASP 32 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc13 B O PHE 34 B PHE 34 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc14 B OD2 ASP 39 B ASP 39 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc15 C OD1 ASP 19 C ASP 19 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc16 C O ASP 19 C ASP 19 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc17 C OD1 ASP 22 C ASP 22 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc18 C O GLY 23 C GLY 23 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc19 C OD2 ASP 25 C ASP 25 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc20 C OD1 ASP 25 C ASP 25 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc21 C O ALA 27 C ALA 27 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc22 H CA CA . C CA 501 1_555 K O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1L2O _atom_sites.fract_transf_matrix[1][1] 0.019305 _atom_sites.fract_transf_matrix[1][2] 0.003928 _atom_sites.fract_transf_matrix[1][3] 0.002633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017903 _atom_sites.fract_transf_matrix[2][3] 0.002213 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 903 903 MG MG . E 5 PDM A 1 900 900 PDM PDM . F 6 ADP A 1 999 999 ADP ADP . G 4 MG B 1 902 902 MG MG . H 7 CA C 1 501 501 CA CA . I 8 HOH A 1 1000 616 HOH HOH . I 8 HOH A 2 1001 618 HOH HOH . I 8 HOH A 3 1002 619 HOH HOH . I 8 HOH A 4 1003 620 HOH HOH . I 8 HOH A 5 1004 621 HOH HOH . I 8 HOH A 6 1005 622 HOH HOH . I 8 HOH A 7 1006 623 HOH HOH . I 8 HOH A 8 1007 624 HOH HOH . I 8 HOH A 9 1008 625 HOH HOH . I 8 HOH A 10 1009 626 HOH HOH . I 8 HOH A 11 1010 630 HOH HOH . I 8 HOH A 12 1011 631 HOH HOH . I 8 HOH A 13 1012 632 HOH HOH . I 8 HOH A 14 1013 633 HOH HOH . I 8 HOH A 15 1014 634 HOH HOH . I 8 HOH A 16 1015 635 HOH HOH . I 8 HOH A 17 1016 636 HOH HOH . I 8 HOH A 18 1017 637 HOH HOH . I 8 HOH A 19 1018 638 HOH HOH . I 8 HOH A 20 1019 639 HOH HOH . I 8 HOH A 21 1020 640 HOH HOH . I 8 HOH A 22 1021 641 HOH HOH . I 8 HOH A 23 1022 642 HOH HOH . I 8 HOH A 24 1023 643 HOH HOH . I 8 HOH A 25 1024 644 HOH HOH . J 8 HOH B 1 903 1 HOH HOH . J 8 HOH B 2 904 629 HOH HOH . K 8 HOH C 1 502 16 HOH HOH . K 8 HOH C 2 503 617 HOH HOH . K 8 HOH C 3 504 627 HOH HOH . K 8 HOH C 4 505 628 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id H _atom_site.label_entity_id 7 _atom_site.Cartn_x -44.822 _atom_site.Cartn_y -19.736 _atom_site.Cartn_z 66.559 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 61.97 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #