data_1L2O # _model_server_result.job_id 0o0qrkFf2w9uFX6N_AfM2A _model_server_result.datetime_utc '2025-01-10 12:05:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":900}' # _entry.id 1L2O # _exptl.entry_id 1L2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.287 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-[4-(2,5-DIOXO-PYRROLIDIN-1-YL)-PHENYLAMINO]-4-HYDROXY-BUTYRIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 95.6 _cell.angle_beta 96.3 _cell.angle_gamma 101.5 _cell.entry_id 1L2O _cell.length_a 51.8 _cell.length_b 57 _cell.length_c 150.5 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 693 A CYS 693 1_555 E CP9 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.809 ? covale ? covale2 A NZ LYS 705 A LYS 705 1_555 E C13 PDM . A PDM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.445 ? metalc ? metalc1 A OG1 THR 183 A THR 183 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc2 A OG SER 241 A SER 241 1_555 D MG MG . A MG 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.408 ? metalc ? metalc3 D MG MG . A MG 903 1_555 F O2B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc4 D MG MG . A MG 903 1_555 F O3B ADP . A ADP 999 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc5 D MG MG . A MG 903 1_555 I O HOH . A HOH 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc6 D MG MG . A MG 903 1_555 I O HOH . A HOH 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 B OD1 ASP 28 B ASP 28 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc8 B OD2 ASP 30 B ASP 30 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.934 ? metalc ? metalc9 B OD1 ASP 30 B ASP 30 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc10 B N ARG 31 B ARG 31 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.788 ? metalc ? metalc11 B N ASP 32 B ASP 32 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc12 B OD1 ASP 32 B ASP 32 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc13 B O PHE 34 B PHE 34 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.127 ? metalc ? metalc14 B OD2 ASP 39 B ASP 39 1_555 G MG MG . B MG 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc15 C OD1 ASP 19 C ASP 19 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc16 C O ASP 19 C ASP 19 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? metalc ? metalc17 C OD1 ASP 22 C ASP 22 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc18 C O GLY 23 C GLY 23 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? metalc ? metalc19 C OD2 ASP 25 C ASP 25 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc20 C OD1 ASP 25 C ASP 25 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.013 ? metalc ? metalc21 C O ALA 27 C ALA 27 1_555 H CA CA . C CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? metalc ? metalc22 H CA CA . C CA 501 1_555 K O HOH . C HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? # _chem_comp.formula 'C14 H16 N2 O5' _chem_comp.formula_weight 292.287 _chem_comp.id PDM _chem_comp.mon_nstd_flag . _chem_comp.name '4-[4-(2,5-DIOXO-PYRROLIDIN-1-YL)-PHENYLAMINO]-4-HYDROXY-BUTYRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'PARA-PHENYL DIMALEMIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CP1 CP2 PDM doub 281 n y CP1 CP6 PDM sing 282 n y CP1 NP1 PDM sing 283 n n CP2 CP3 PDM sing 284 n y CP2 HP2 PDM sing 285 n n CP3 CP4 PDM doub 286 n y CP3 HP3 PDM sing 287 n n CP4 CP5 PDM sing 288 n y CP4 NP2 PDM sing 289 n n CP5 CP6 PDM doub 290 n y CP5 HP5 PDM sing 291 n n CP6 HP6 PDM sing 292 n n CP7 CP8 PDM sing 293 n n CP7 NP2 PDM sing 294 n n CP7 OP3 PDM sing 295 n n CP7 HP7 PDM sing 296 n n CP8 CP9 PDM sing 297 n n CP8 HP81 PDM sing 298 n n CP8 HP82 PDM sing 299 n n CP9 C10 PDM sing 300 n n CP9 HP91 PDM sing 301 n n CP9 HP92 PDM sing 302 n n C10 OP4 PDM sing 303 n n C10 OP5 PDM doub 304 n n C11 NP1 PDM sing 305 n n C11 OP1 PDM doub 306 n n C11 C12 PDM sing 307 n n NP1 C14 PDM sing 308 n n NP2 HP2N PDM sing 309 n n OP2 C14 PDM doub 310 n n OP3 HP3O PDM sing 311 n n OP4 HP4O PDM sing 312 n n C12 C13 PDM sing 313 n n C12 H121 PDM sing 314 n n C12 H122 PDM sing 315 n n C14 C13 PDM sing 316 n n C13 H131 PDM sing 317 n n C13 H132 PDM sing 318 n n # _atom_sites.entry_id 1L2O _atom_sites.fract_transf_matrix[1][1] 0.019305 _atom_sites.fract_transf_matrix[1][2] 0.003928 _atom_sites.fract_transf_matrix[1][3] 0.002633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017903 _atom_sites.fract_transf_matrix[2][3] 0.002213 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006736 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 903 903 MG MG . E 5 PDM A 1 900 900 PDM PDM . F 6 ADP A 1 999 999 ADP ADP . G 4 MG B 1 902 902 MG MG . H 7 CA C 1 501 501 CA CA . I 8 HOH A 1 1000 616 HOH HOH . I 8 HOH A 2 1001 618 HOH HOH . I 8 HOH A 3 1002 619 HOH HOH . I 8 HOH A 4 1003 620 HOH HOH . I 8 HOH A 5 1004 621 HOH HOH . I 8 HOH A 6 1005 622 HOH HOH . I 8 HOH A 7 1006 623 HOH HOH . I 8 HOH A 8 1007 624 HOH HOH . I 8 HOH A 9 1008 625 HOH HOH . I 8 HOH A 10 1009 626 HOH HOH . I 8 HOH A 11 1010 630 HOH HOH . I 8 HOH A 12 1011 631 HOH HOH . I 8 HOH A 13 1012 632 HOH HOH . I 8 HOH A 14 1013 633 HOH HOH . I 8 HOH A 15 1014 634 HOH HOH . I 8 HOH A 16 1015 635 HOH HOH . I 8 HOH A 17 1016 636 HOH HOH . I 8 HOH A 18 1017 637 HOH HOH . I 8 HOH A 19 1018 638 HOH HOH . I 8 HOH A 20 1019 639 HOH HOH . I 8 HOH A 21 1020 640 HOH HOH . I 8 HOH A 22 1021 641 HOH HOH . I 8 HOH A 23 1022 642 HOH HOH . I 8 HOH A 24 1023 643 HOH HOH . I 8 HOH A 25 1024 644 HOH HOH . J 8 HOH B 1 903 1 HOH HOH . J 8 HOH B 2 904 629 HOH HOH . K 8 HOH C 1 502 16 HOH HOH . K 8 HOH C 2 503 617 HOH HOH . K 8 HOH C 3 504 627 HOH HOH . K 8 HOH C 4 505 628 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CP1 PDM . . . E 5 -6.156 -8.579 13.484 1 104.5 ? CP1 PDM 900 A 1 HETATM 2 C CP2 PDM . . . E 5 -6.06 -7.764 12.357 1 104.92 ? CP2 PDM 900 A 1 HETATM 3 C CP3 PDM . . . E 5 -7.14 -6.973 11.953 1 105.42 ? CP3 PDM 900 A 1 HETATM 4 C CP4 PDM . . . E 5 -8.33 -6.986 12.668 1 105.58 ? CP4 PDM 900 A 1 HETATM 5 C CP5 PDM . . . E 5 -8.432 -7.795 13.793 1 105.58 ? CP5 PDM 900 A 1 HETATM 6 C CP6 PDM . . . E 5 -7.352 -8.586 14.198 1 104.23 ? CP6 PDM 900 A 1 HETATM 7 C CP7 PDM . . . E 5 -9.49 -5.122 11.354 1 105.58 ? CP7 PDM 900 A 1 HETATM 8 C CP8 PDM . . . E 5 -9.24 -5.566 9.983 1 105.43 ? CP8 PDM 900 A 1 HETATM 9 C CP9 PDM . . . E 5 -8.699 -4.432 9.107 1 105.58 ? CP9 PDM 900 A 1 HETATM 10 C C10 PDM . . . E 5 -8.464 -4.935 7.651 1 105.24 ? C10 PDM 900 A 1 HETATM 11 C C11 PDM . . . E 5 -5.065 -10.167 14.998 1 105.58 ? C11 PDM 900 A 1 HETATM 12 N NP1 PDM . . . E 5 -5.082 -9.471 13.843 1 105.58 ? NP1 PDM 900 A 1 HETATM 13 N NP2 PDM . . . E 5 -9.455 -6.102 12.273 1 105.58 ? NP2 PDM 900 A 1 HETATM 14 O OP1 PDM . . . E 5 -6.035 -10.363 15.733 1 105.58 ? OP1 PDM 900 A 1 HETATM 15 O OP2 PDM . . . E 5 -3.646 -8.963 12.127 1 105.58 ? OP2 PDM 900 A 1 HETATM 16 O OP3 PDM . . . E 5 -9.36 -3.907 11.561 1 104.28 ? OP3 PDM 900 A 1 HETATM 17 O OP4 PDM . . . E 5 -7.388 -4.883 7.018 1 101.98 ? OP4 PDM 900 A 1 HETATM 18 O OP5 PDM . . . E 5 -9.473 -4.847 6.962 1 105.58 ? OP5 PDM 900 A 1 HETATM 19 C C12 PDM . . . E 5 -3.75 -10.606 15.173 1 105.58 ? C12 PDM 900 A 1 HETATM 20 C C14 PDM . . . E 5 -3.88 -9.451 13.232 1 105.58 ? C14 PDM 900 A 1 HETATM 21 C C13 PDM . . . E 5 -3.006 -10.16 14.061 1 104.78 ? C13 PDM 900 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #