data_1L3R # _model_server_result.job_id cke9Lm8Jj5VSDNFRXnV2CA _model_server_result.datetime_utc '2024-10-13 06:23:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":391}' # _entry.id 1L3R # _exptl.entry_id 1L3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L3R _cell.length_a 72.68 _cell.length_b 75.7 _cell.length_c 80.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PHE 138 E PHE 138 1_555 A N SEP 139 E SEP 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C SEP 139 E SEP 139 1_555 A N GLU 140 E GLU 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale3 A C TRP 196 E TRP 196 1_555 A N TPO 197 E TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 A C TPO 197 E TPO 197 1_555 A N LEU 198 E LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale5 A C VAL 337 E VAL 337 1_555 A N SEP 338 E SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C SEP 338 E SEP 338 1_555 A N ILE 339 E ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASP 166 E ASP 166 1_555 F AL AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.605 ? metalc ? metalc2 A OD1 ASN 171 E ASN 171 1_555 D MG MG . E MG 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc3 A OD2 ASP 184 E ASP 184 1_555 C MG MG . E MG 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A OD1 ASP 184 E ASP 184 1_555 C MG MG . E MG 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 A OD2 ASP 184 E ASP 184 1_555 D MG MG . E MG 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? metalc ? metalc6 A OD2 ASP 184 E ASP 184 1_555 F AL AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.365 ? metalc ? metalc7 E O2B ADP . E ADP 381 1_555 C MG MG . E MG 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc8 E O2A ADP . E ADP 381 1_555 D MG MG . E MG 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc9 E O3B ADP . E ADP 381 1_555 D MG MG . E MG 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc10 E O3B ADP . E ADP 381 1_555 F AL AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 C MG MG . E MG 391 1_555 F F2 AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? metalc ? metalc12 C MG MG . E MG 391 1_555 F AL AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.347 ? metalc ? metalc13 C MG MG . E MG 391 1_555 H O HOH . E HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc14 C MG MG . E MG 391 1_555 H O HOH . E HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc15 D MG MG . E MG 392 1_555 F AL AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc16 D MG MG . E MG 392 1_555 F F1 AF3 . E AF3 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc17 D MG MG . E MG 392 1_555 H O HOH . E HOH 578 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc18 F AL AF3 . E AF3 400 1_555 B OG SER 17 I SER 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1L3R _atom_sites.fract_transf_matrix[1][1] 0.013759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01321 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012415 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG E 1 391 391 MG MG . D 3 MG E 1 392 392 MG MG . E 4 ADP E 1 381 381 ADP ADP . F 5 AF3 E 1 400 400 AF3 ALF . G 6 MPD E 1 382 382 MPD MPD . H 7 HOH E 1 401 401 HOH HOH . H 7 HOH E 2 403 403 HOH HOH . H 7 HOH E 3 404 404 HOH HOH . H 7 HOH E 4 405 405 HOH HOH . H 7 HOH E 5 406 406 HOH HOH . H 7 HOH E 6 407 407 HOH HOH . H 7 HOH E 7 410 410 HOH HOH . H 7 HOH E 8 411 411 HOH HOH . H 7 HOH E 9 412 412 HOH HOH . H 7 HOH E 10 413 413 HOH HOH . H 7 HOH E 11 414 414 HOH HOH . H 7 HOH E 12 415 415 HOH HOH . H 7 HOH E 13 416 416 HOH HOH . H 7 HOH E 14 417 417 HOH HOH . H 7 HOH E 15 418 418 HOH HOH . H 7 HOH E 16 419 419 HOH HOH . H 7 HOH E 17 420 420 HOH HOH . H 7 HOH E 18 421 421 HOH HOH . H 7 HOH E 19 422 422 HOH HOH . H 7 HOH E 20 423 423 HOH HOH . H 7 HOH E 21 425 425 HOH HOH . H 7 HOH E 22 426 426 HOH HOH . H 7 HOH E 23 428 428 HOH HOH . H 7 HOH E 24 429 429 HOH HOH . H 7 HOH E 25 430 430 HOH HOH . H 7 HOH E 26 431 431 HOH HOH . H 7 HOH E 27 432 432 HOH HOH . H 7 HOH E 28 433 433 HOH HOH . H 7 HOH E 29 434 434 HOH HOH . H 7 HOH E 30 435 435 HOH HOH . H 7 HOH E 31 436 436 HOH HOH . H 7 HOH E 32 437 437 HOH HOH . H 7 HOH E 33 438 438 HOH HOH . H 7 HOH E 34 439 439 HOH HOH . H 7 HOH E 35 441 441 HOH HOH . H 7 HOH E 36 443 443 HOH HOH . H 7 HOH E 37 445 445 HOH HOH . H 7 HOH E 38 446 446 HOH HOH . H 7 HOH E 39 447 447 HOH HOH . H 7 HOH E 40 449 449 HOH HOH . H 7 HOH E 41 450 450 HOH HOH . H 7 HOH E 42 451 451 HOH HOH . H 7 HOH E 43 453 453 HOH HOH . H 7 HOH E 44 455 455 HOH HOH . H 7 HOH E 45 456 456 HOH HOH . H 7 HOH E 46 457 457 HOH HOH . H 7 HOH E 47 458 458 HOH HOH . H 7 HOH E 48 459 459 HOH HOH . H 7 HOH E 49 460 460 HOH HOH . H 7 HOH E 50 461 461 HOH HOH . H 7 HOH E 51 462 462 HOH HOH . H 7 HOH E 52 463 463 HOH HOH . H 7 HOH E 53 464 464 HOH HOH . H 7 HOH E 54 465 465 HOH HOH . H 7 HOH E 55 467 467 HOH HOH . H 7 HOH E 56 469 469 HOH HOH . H 7 HOH E 57 470 470 HOH HOH . H 7 HOH E 58 471 471 HOH HOH . H 7 HOH E 59 473 473 HOH HOH . H 7 HOH E 60 474 474 HOH HOH . H 7 HOH E 61 475 475 HOH HOH . H 7 HOH E 62 476 476 HOH HOH . H 7 HOH E 63 478 478 HOH HOH . H 7 HOH E 64 479 479 HOH HOH . H 7 HOH E 65 480 480 HOH HOH . H 7 HOH E 66 481 481 HOH HOH . H 7 HOH E 67 482 482 HOH HOH . H 7 HOH E 68 483 483 HOH HOH . H 7 HOH E 69 484 484 HOH HOH . H 7 HOH E 70 485 485 HOH HOH . H 7 HOH E 71 486 486 HOH HOH . H 7 HOH E 72 487 487 HOH HOH . H 7 HOH E 73 488 488 HOH HOH . H 7 HOH E 74 489 489 HOH HOH . H 7 HOH E 75 490 490 HOH HOH . H 7 HOH E 76 491 491 HOH HOH . H 7 HOH E 77 492 492 HOH HOH . H 7 HOH E 78 493 493 HOH HOH . H 7 HOH E 79 494 494 HOH HOH . H 7 HOH E 80 495 495 HOH HOH . H 7 HOH E 81 496 496 HOH HOH . H 7 HOH E 82 497 497 HOH HOH . H 7 HOH E 83 498 498 HOH HOH . H 7 HOH E 84 499 499 HOH HOH . H 7 HOH E 85 500 500 HOH HOH . H 7 HOH E 86 501 501 HOH HOH . H 7 HOH E 87 502 502 HOH HOH . H 7 HOH E 88 503 503 HOH HOH . H 7 HOH E 89 504 504 HOH HOH . H 7 HOH E 90 505 505 HOH HOH . H 7 HOH E 91 506 506 HOH HOH . H 7 HOH E 92 513 513 HOH HOH . H 7 HOH E 93 514 514 HOH HOH . H 7 HOH E 94 515 515 HOH HOH . H 7 HOH E 95 516 516 HOH HOH . H 7 HOH E 96 517 517 HOH HOH . H 7 HOH E 97 519 519 HOH HOH . H 7 HOH E 98 520 520 HOH HOH . H 7 HOH E 99 522 522 HOH HOH . H 7 HOH E 100 523 523 HOH HOH . H 7 HOH E 101 525 525 HOH HOH . H 7 HOH E 102 526 526 HOH HOH . H 7 HOH E 103 527 527 HOH HOH . H 7 HOH E 104 528 528 HOH HOH . H 7 HOH E 105 529 529 HOH HOH . H 7 HOH E 106 531 531 HOH HOH . H 7 HOH E 107 532 532 HOH HOH . H 7 HOH E 108 533 533 HOH HOH . H 7 HOH E 109 534 534 HOH HOH . H 7 HOH E 110 535 535 HOH HOH . H 7 HOH E 111 536 536 HOH HOH . H 7 HOH E 112 537 537 HOH HOH . H 7 HOH E 113 538 538 HOH HOH . H 7 HOH E 114 539 539 HOH HOH . H 7 HOH E 115 540 540 HOH HOH . H 7 HOH E 116 541 541 HOH HOH . H 7 HOH E 117 542 542 HOH HOH . H 7 HOH E 118 543 543 HOH HOH . H 7 HOH E 119 546 546 HOH HOH . H 7 HOH E 120 548 548 HOH HOH . H 7 HOH E 121 549 549 HOH HOH . H 7 HOH E 122 550 550 HOH HOH . H 7 HOH E 123 551 551 HOH HOH . H 7 HOH E 124 552 552 HOH HOH . H 7 HOH E 125 554 554 HOH HOH . H 7 HOH E 126 555 555 HOH HOH . H 7 HOH E 127 558 558 HOH HOH . H 7 HOH E 128 559 559 HOH HOH . H 7 HOH E 129 561 561 HOH HOH . H 7 HOH E 130 562 562 HOH HOH . H 7 HOH E 131 563 563 HOH HOH . H 7 HOH E 132 564 564 HOH HOH . H 7 HOH E 133 565 565 HOH HOH . H 7 HOH E 134 566 566 HOH HOH . H 7 HOH E 135 567 567 HOH HOH . H 7 HOH E 136 568 568 HOH HOH . H 7 HOH E 137 569 569 HOH HOH . H 7 HOH E 138 570 570 HOH HOH . H 7 HOH E 139 571 571 HOH HOH . H 7 HOH E 140 572 572 HOH HOH . H 7 HOH E 141 573 573 HOH HOH . H 7 HOH E 142 574 574 HOH HOH . H 7 HOH E 143 575 575 HOH HOH . H 7 HOH E 144 576 576 HOH HOH . H 7 HOH E 145 577 577 HOH HOH . H 7 HOH E 146 578 578 HOH HOH . H 7 HOH E 147 582 582 HOH HOH . H 7 HOH E 148 583 583 HOH HOH . H 7 HOH E 149 584 584 HOH HOH . H 7 HOH E 150 585 585 HOH HOH . H 7 HOH E 151 587 587 HOH HOH . H 7 HOH E 152 588 588 HOH HOH . H 7 HOH E 153 589 589 HOH HOH . H 7 HOH E 154 590 590 HOH HOH . H 7 HOH E 155 592 592 HOH HOH . H 7 HOH E 156 593 593 HOH HOH . H 7 HOH E 157 594 594 HOH HOH . H 7 HOH E 158 595 595 HOH HOH . H 7 HOH E 159 596 596 HOH HOH . H 7 HOH E 160 597 597 HOH HOH . H 7 HOH E 161 598 598 HOH HOH . H 7 HOH E 162 599 599 HOH HOH . H 7 HOH E 163 600 600 HOH HOH . H 7 HOH E 164 601 601 HOH HOH . H 7 HOH E 165 602 602 HOH HOH . H 7 HOH E 166 603 603 HOH HOH . H 7 HOH E 167 604 604 HOH HOH . H 7 HOH E 168 605 605 HOH HOH . H 7 HOH E 169 606 606 HOH HOH . H 7 HOH E 170 607 607 HOH HOH . H 7 HOH E 171 608 608 HOH HOH . H 7 HOH E 172 609 609 HOH HOH . H 7 HOH E 173 611 611 HOH HOH . H 7 HOH E 174 612 612 HOH HOH . H 7 HOH E 175 613 613 HOH HOH . H 7 HOH E 176 615 615 HOH HOH . H 7 HOH E 177 616 616 HOH HOH . H 7 HOH E 178 617 617 HOH HOH . H 7 HOH E 179 618 618 HOH HOH . H 7 HOH E 180 620 620 HOH HOH . H 7 HOH E 181 621 621 HOH HOH . H 7 HOH E 182 622 622 HOH HOH . H 7 HOH E 183 623 623 HOH HOH . H 7 HOH E 184 624 624 HOH HOH . H 7 HOH E 185 625 625 HOH HOH . H 7 HOH E 186 626 626 HOH HOH . H 7 HOH E 187 627 627 HOH HOH . H 7 HOH E 188 628 628 HOH HOH . H 7 HOH E 189 629 629 HOH HOH . H 7 HOH E 190 630 630 HOH HOH . H 7 HOH E 191 631 631 HOH HOH . H 7 HOH E 192 632 632 HOH HOH . H 7 HOH E 193 633 633 HOH HOH . H 7 HOH E 194 634 634 HOH HOH . H 7 HOH E 195 635 635 HOH HOH . H 7 HOH E 196 636 636 HOH HOH . H 7 HOH E 197 637 637 HOH HOH . H 7 HOH E 198 638 638 HOH HOH . H 7 HOH E 199 639 639 HOH HOH . I 7 HOH I 1 402 402 HOH HOH . I 7 HOH I 2 408 408 HOH HOH . I 7 HOH I 3 409 409 HOH HOH . I 7 HOH I 4 424 424 HOH HOH . I 7 HOH I 5 427 427 HOH HOH . I 7 HOH I 6 440 440 HOH HOH . I 7 HOH I 7 442 442 HOH HOH . I 7 HOH I 8 444 444 HOH HOH . I 7 HOH I 9 448 448 HOH HOH . I 7 HOH I 10 452 452 HOH HOH . I 7 HOH I 11 454 454 HOH HOH . I 7 HOH I 12 466 466 HOH HOH . I 7 HOH I 13 468 468 HOH HOH . I 7 HOH I 14 472 472 HOH HOH . I 7 HOH I 15 477 477 HOH HOH . I 7 HOH I 16 518 518 HOH HOH . I 7 HOH I 17 521 521 HOH HOH . I 7 HOH I 18 524 524 HOH HOH . I 7 HOH I 19 530 530 HOH HOH . I 7 HOH I 20 544 544 HOH HOH . I 7 HOH I 21 545 545 HOH HOH . I 7 HOH I 22 547 547 HOH HOH . I 7 HOH I 23 553 553 HOH HOH . I 7 HOH I 24 556 556 HOH HOH . I 7 HOH I 25 557 557 HOH HOH . I 7 HOH I 26 560 560 HOH HOH . I 7 HOH I 27 579 579 HOH HOH . I 7 HOH I 28 580 580 HOH HOH . I 7 HOH I 29 581 581 HOH HOH . I 7 HOH I 30 586 586 HOH HOH . I 7 HOH I 31 591 591 HOH HOH . I 7 HOH I 32 610 610 HOH HOH . I 7 HOH I 33 614 614 HOH HOH . I 7 HOH I 34 619 619 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 14.426 _atom_site.Cartn_y 8.281 _atom_site.Cartn_z -3.596 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 27.15 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 391 _atom_site.auth_asym_id E _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 1 #