data_1L3Z # _model_server_result.job_id 40YoLQ8uiD29I744gsJSaw _model_server_result.datetime_utc '2024-10-18 13:26:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 1L3Z # _exptl.entry_id 1L3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L3Z _cell.length_a 25.74 _cell.length_b 106.58 _cell.length_c 30.26 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 21 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1,2 B,E 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 30.26 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O HOH . A HOH 202 1_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc2 D O HOH . A HOH 202 6_555 C NA NA . A NA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? hydrog WATSON-CRICK hydrog1 B N1 G 1 B G 8 1_555 B N3 C 6 B C 13 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N2 G 1 B G 8 1_555 B O2 C 6 B C 13 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O6 G 1 B G 8 1_555 B N4 C 6 B C 13 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N3 U 2 B U 9 1_555 B N1 A 5 B A 12 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B O4 U 2 B U 9 1_555 B N6 A 5 B A 12 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N1 A 3 B A 10 1_555 B N3 U 4 B U 11 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B N6 A 3 B A 10 1_555 B O4 U 4 B U 11 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 U 4 B U 11 1_555 B N1 A 3 B A 10 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 U 4 B U 11 1_555 B N6 A 3 B A 10 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 A 5 B A 12 1_555 B N3 U 2 B U 9 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N6 A 5 B A 12 1_555 B O4 U 2 B U 9 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B N3 C 6 B C 13 1_555 B N1 G 1 B G 8 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N4 C 6 B C 13 1_555 B O6 G 1 B G 8 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B O2 C 6 B C 13 1_555 B N2 G 1 B G 8 3_556 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1L3Z _atom_sites.fract_transf_matrix[1][1] 0.03885 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009383 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.033047 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 301 301 NA NA . D 3 HOH A 1 101 101 HOH WAT . D 3 HOH A 2 102 102 HOH WAT . D 3 HOH A 3 104 104 HOH WAT . D 3 HOH A 4 105 105 HOH WAT . D 3 HOH A 5 106 106 HOH WAT . D 3 HOH A 6 107 107 HOH WAT . D 3 HOH A 7 108 108 HOH WAT . D 3 HOH A 8 119 119 HOH WAT . D 3 HOH A 9 120 120 HOH WAT . D 3 HOH A 10 121 121 HOH WAT . D 3 HOH A 11 122 122 HOH WAT . D 3 HOH A 12 123 123 HOH WAT . D 3 HOH A 13 125 125 HOH WAT . D 3 HOH A 14 126 126 HOH WAT . D 3 HOH A 15 127 127 HOH WAT . D 3 HOH A 16 128 128 HOH WAT . D 3 HOH A 17 129 129 HOH WAT . D 3 HOH A 18 132 132 HOH WAT . D 3 HOH A 19 136 136 HOH WAT . D 3 HOH A 20 137 137 HOH WAT . D 3 HOH A 21 138 138 HOH WAT . D 3 HOH A 22 202 202 HOH WAT . E 3 HOH B 1 103 103 HOH WAT . E 3 HOH B 2 109 109 HOH WAT . E 3 HOH B 3 110 110 HOH WAT . E 3 HOH B 4 111 111 HOH WAT . E 3 HOH B 5 112 112 HOH WAT . E 3 HOH B 6 113 113 HOH WAT . E 3 HOH B 7 114 114 HOH WAT . E 3 HOH B 8 115 115 HOH WAT . E 3 HOH B 9 116 116 HOH WAT . E 3 HOH B 10 117 117 HOH WAT . E 3 HOH B 11 118 118 HOH WAT . E 3 HOH B 12 124 124 HOH WAT . E 3 HOH B 13 130 130 HOH WAT . E 3 HOH B 14 133 133 HOH WAT . E 3 HOH B 15 134 134 HOH WAT . E 3 HOH B 16 135 135 HOH WAT . E 3 HOH B 17 201 201 HOH WAT . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 6.438 _atom_site.Cartn_y 26.636 _atom_site.Cartn_z -0.156 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 64.27 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 301 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #