data_1L4E # _model_server_result.job_id psGk596pHJZHSbkpO2lWfA _model_server_result.datetime_utc '2024-11-28 02:30:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l4e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":990}' # _entry.id 1L4E # _exptl.entry_id 1L4E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 358.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ALPHA-RIBAZOLE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L4E _cell.length_a 71.92 _cell.length_b 89.97 _cell.length_c 47.61 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L4E _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.92 89.97 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H19 N2 O7 P' _chem_comp.formula_weight 358.284 _chem_comp.id RBZ _chem_comp.mon_nstd_flag . _chem_comp.name "ALPHA-RIBAZOLE-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C2 RBZ doub 277 n y N3 C3A RBZ sing 278 n y N1 C2 RBZ sing 279 n y N1 C7A RBZ sing 280 n y N1 C1' RBZ sing 281 n n C2 H2 RBZ sing 282 n n C7A C3A RBZ doub 283 n y C7A C7 RBZ sing 284 n y C3A C4 RBZ sing 285 n y C4 C5 RBZ doub 286 n y C4 H4 RBZ sing 287 n n C5 C6 RBZ sing 288 n y C5 C8 RBZ sing 289 n n C6 C7 RBZ doub 290 n y C6 C9 RBZ sing 291 n n C7 H7 RBZ sing 292 n n C8 H81 RBZ sing 293 n n C8 H82 RBZ sing 294 n n C8 H83 RBZ sing 295 n n C9 H91 RBZ sing 296 n n C9 H92 RBZ sing 297 n n C9 H93 RBZ sing 298 n n P O1P RBZ doub 299 n n P O2P RBZ sing 300 n n P O3P RBZ sing 301 n n P O5' RBZ sing 302 n n O2P HOP2 RBZ sing 303 n n O3P HOP3 RBZ sing 304 n n O5' C5' RBZ sing 305 n n C5' C4' RBZ sing 306 n n C5' "H5'1" RBZ sing 307 n n C5' "H5'2" RBZ sing 308 n n C4' O4' RBZ sing 309 n n C4' C3' RBZ sing 310 n n C4' H4' RBZ sing 311 n n O4' C1' RBZ sing 312 n n C3' O3' RBZ sing 313 n n C3' C2' RBZ sing 314 n n C3' H3' RBZ sing 315 n n O3' "HO'3" RBZ sing 316 n n C2' O2' RBZ sing 317 n n C2' C1' RBZ sing 318 n n C2' H2' RBZ sing 319 n n O2' "HO'2" RBZ sing 320 n n C1' H1' RBZ sing 321 n n # _atom_sites.entry_id 1L4E _atom_sites.fract_transf_matrix[1][1] 0.013904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011115 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021004 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RBZ A 1 990 990 RBZ RBZ . C 3 HOH A 1 1001 1001 HOH HOH . C 3 HOH A 2 1002 1002 HOH HOH . C 3 HOH A 3 1003 1003 HOH HOH . C 3 HOH A 4 1004 1004 HOH HOH . C 3 HOH A 5 1005 1005 HOH HOH . C 3 HOH A 6 1006 1006 HOH HOH . C 3 HOH A 7 1007 1007 HOH HOH . C 3 HOH A 8 1008 1008 HOH HOH . C 3 HOH A 9 1009 1009 HOH HOH . C 3 HOH A 10 1010 1010 HOH HOH . C 3 HOH A 11 1011 1011 HOH HOH . C 3 HOH A 12 1012 1012 HOH HOH . C 3 HOH A 13 1013 1013 HOH HOH . C 3 HOH A 14 1014 1014 HOH HOH . C 3 HOH A 15 1015 1015 HOH HOH . C 3 HOH A 16 1016 1016 HOH HOH . C 3 HOH A 17 1018 1018 HOH HOH . C 3 HOH A 18 1019 1019 HOH HOH . C 3 HOH A 19 1020 1020 HOH HOH . C 3 HOH A 20 1021 1021 HOH HOH . C 3 HOH A 21 1022 1022 HOH HOH . C 3 HOH A 22 1023 1023 HOH HOH . C 3 HOH A 23 1025 1025 HOH HOH . C 3 HOH A 24 1026 1026 HOH HOH . C 3 HOH A 25 1027 1027 HOH HOH . C 3 HOH A 26 1028 1028 HOH HOH . C 3 HOH A 27 1029 1029 HOH HOH . C 3 HOH A 28 1030 1030 HOH HOH . C 3 HOH A 29 1031 1031 HOH HOH . C 3 HOH A 30 1032 1032 HOH HOH . C 3 HOH A 31 1033 1033 HOH HOH . C 3 HOH A 32 1034 1034 HOH HOH . C 3 HOH A 33 1035 1035 HOH HOH . C 3 HOH A 34 1036 1036 HOH HOH . C 3 HOH A 35 1037 1037 HOH HOH . C 3 HOH A 36 1039 1039 HOH HOH . C 3 HOH A 37 1040 1040 HOH HOH . C 3 HOH A 38 1041 1041 HOH HOH . C 3 HOH A 39 1042 1042 HOH HOH . C 3 HOH A 40 1043 1043 HOH HOH . C 3 HOH A 41 1044 1044 HOH HOH . C 3 HOH A 42 1045 1045 HOH HOH . C 3 HOH A 43 1046 1046 HOH HOH . C 3 HOH A 44 1047 1047 HOH HOH . C 3 HOH A 45 1048 1048 HOH HOH . C 3 HOH A 46 1049 1049 HOH HOH . C 3 HOH A 47 1050 1050 HOH HOH . C 3 HOH A 48 1051 1051 HOH HOH . C 3 HOH A 49 1052 1052 HOH HOH . C 3 HOH A 50 1053 1053 HOH HOH . C 3 HOH A 51 1054 1054 HOH HOH . C 3 HOH A 52 1055 1055 HOH HOH . C 3 HOH A 53 1056 1056 HOH HOH . C 3 HOH A 54 1057 1057 HOH HOH . C 3 HOH A 55 1058 1058 HOH HOH . C 3 HOH A 56 1059 1059 HOH HOH . C 3 HOH A 57 1060 1060 HOH HOH . C 3 HOH A 58 1061 1061 HOH HOH . C 3 HOH A 59 1062 1062 HOH HOH . C 3 HOH A 60 1063 1063 HOH HOH . C 3 HOH A 61 1064 1064 HOH HOH . C 3 HOH A 62 1065 1065 HOH HOH . C 3 HOH A 63 1067 1067 HOH HOH . C 3 HOH A 64 1069 1069 HOH HOH . C 3 HOH A 65 1072 1072 HOH HOH . C 3 HOH A 66 1074 1074 HOH HOH . C 3 HOH A 67 1075 1075 HOH HOH . C 3 HOH A 68 1077 1077 HOH HOH . C 3 HOH A 69 1078 1078 HOH HOH . C 3 HOH A 70 1079 1079 HOH HOH . C 3 HOH A 71 1080 1080 HOH HOH . C 3 HOH A 72 1081 1081 HOH HOH . C 3 HOH A 73 1082 1082 HOH HOH . C 3 HOH A 74 1084 1084 HOH HOH . C 3 HOH A 75 1086 1086 HOH HOH . C 3 HOH A 76 1088 1088 HOH HOH . C 3 HOH A 77 1090 1090 HOH HOH . C 3 HOH A 78 1091 1091 HOH HOH . C 3 HOH A 79 1092 1092 HOH HOH . C 3 HOH A 80 1094 1094 HOH HOH . C 3 HOH A 81 1097 1097 HOH HOH . C 3 HOH A 82 1098 1098 HOH HOH . C 3 HOH A 83 1100 1100 HOH HOH . C 3 HOH A 84 1103 1103 HOH HOH . C 3 HOH A 85 1105 1105 HOH HOH . C 3 HOH A 86 1108 1108 HOH HOH . C 3 HOH A 87 1109 1109 HOH HOH . C 3 HOH A 88 1112 1112 HOH HOH . C 3 HOH A 89 1113 1113 HOH HOH . C 3 HOH A 90 1114 1114 HOH HOH . C 3 HOH A 91 1116 1116 HOH HOH . C 3 HOH A 92 1117 1117 HOH HOH . C 3 HOH A 93 1121 1121 HOH HOH . C 3 HOH A 94 1123 1123 HOH HOH . C 3 HOH A 95 1124 1124 HOH HOH . C 3 HOH A 96 1127 1127 HOH HOH . C 3 HOH A 97 1130 1130 HOH HOH . C 3 HOH A 98 1132 1132 HOH HOH . C 3 HOH A 99 1137 1137 HOH HOH . C 3 HOH A 100 1139 1139 HOH HOH . C 3 HOH A 101 1200 1200 HOH HOH . C 3 HOH A 102 1201 1201 HOH HOH . C 3 HOH A 103 1202 1202 HOH HOH . C 3 HOH A 104 1203 1203 HOH HOH . C 3 HOH A 105 1204 1204 HOH HOH . C 3 HOH A 106 1206 1206 HOH HOH . C 3 HOH A 107 1207 1207 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 RBZ . . . B 2 56.354 41.75 14.085 1 33.79 ? N3 RBZ 990 A 1 HETATM 2 N N1 RBZ . . . B 2 56.802 40.986 11.976 1 34.17 ? N1 RBZ 990 A 1 HETATM 3 C C2 RBZ . . . B 2 55.976 40.97 13.065 1 35.19 ? C2 RBZ 990 A 1 HETATM 4 C C7A RBZ . . . B 2 57.825 41.896 12.389 1 34.14 ? C7A RBZ 990 A 1 HETATM 5 C C3A RBZ . . . B 2 57.527 42.364 13.693 1 33.94 ? C3A RBZ 990 A 1 HETATM 6 C C4 RBZ . . . B 2 58.377 43.299 14.355 1 32.97 ? C4 RBZ 990 A 1 HETATM 7 C C5 RBZ . . . B 2 59.546 43.773 13.703 1 34.29 ? C5 RBZ 990 A 1 HETATM 8 C C6 RBZ . . . B 2 59.873 43.293 12.357 1 32.07 ? C6 RBZ 990 A 1 HETATM 9 C C7 RBZ . . . B 2 59.012 42.368 11.719 1 33.57 ? C7 RBZ 990 A 1 HETATM 10 C C8 RBZ . . . B 2 60.446 44.783 14.425 1 33.38 ? C8 RBZ 990 A 1 HETATM 11 C C9 RBZ . . . B 2 61.115 43.771 11.627 1 33.11 ? C9 RBZ 990 A 1 HETATM 12 P P RBZ . . . B 2 59.742 39.317 6.169 1 26.7 ? P RBZ 990 A 1 HETATM 13 O O1P RBZ . . . B 2 59.515 38.062 5.365 1 23.31 ? O1P RBZ 990 A 1 HETATM 14 O O2P RBZ . . . B 2 59.889 40.482 5.249 1 24.14 ? O2P RBZ 990 A 1 HETATM 15 O O3P RBZ . . . B 2 60.974 39.186 6.976 1 26.24 ? O3P RBZ 990 A 1 HETATM 16 O O5' RBZ . . . B 2 58.487 39.572 7.112 1 29.05 ? O5' RBZ 990 A 1 HETATM 17 C C5' RBZ . . . B 2 58.103 38.577 8.086 1 33.5 ? C5' RBZ 990 A 1 HETATM 18 C C4' RBZ . . . B 2 58.411 38.995 9.527 1 34.27 ? C4' RBZ 990 A 1 HETATM 19 O O4' RBZ . . . B 2 57.884 40.325 9.884 1 35.74 ? O4' RBZ 990 A 1 HETATM 20 C C3' RBZ . . . B 2 57.834 38.124 10.612 1 36.85 ? C3' RBZ 990 A 1 HETATM 21 O O3' RBZ . . . B 2 58.618 38.161 11.823 1 37.55 ? O3' RBZ 990 A 1 HETATM 22 C C2' RBZ . . . B 2 56.442 38.736 10.75 1 36.47 ? C2' RBZ 990 A 1 HETATM 23 O O2' RBZ . . . B 2 55.872 38.296 11.988 1 35.27 ? O2' RBZ 990 A 1 HETATM 24 C C1' RBZ . . . B 2 56.686 40.248 10.663 1 34.65 ? C1' RBZ 990 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 24 #