data_1L4K # _model_server_result.job_id sWHIC1eKPpPgrq4MJCo6-w _model_server_result.datetime_utc '2024-11-28 01:12:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l4k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":991}' # _entry.id 1L4K # _exptl.entry_id 1L4K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L4K _cell.length_a 71.9 _cell.length_b 90.03 _cell.length_c 47.57 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L4K _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.9 90.03 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.024 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 257 n n P O2P NCN doub 258 n n P O3P NCN sing 259 n n P O5' NCN sing 260 n n O1P HOP1 NCN sing 261 n n O5' C5' NCN sing 262 n n C5' C4' NCN sing 263 n n C5' "H5'1" NCN sing 264 n n C5' "H5'2" NCN sing 265 n n C4' O4' NCN sing 266 n n C4' C3' NCN sing 267 n n C4' H4' NCN sing 268 n n O4' C1' NCN sing 269 n n C3' O3' NCN sing 270 n n C3' C2' NCN sing 271 n n C3' H3' NCN sing 272 n n O3' "HO'3" NCN sing 273 n n C2' O2' NCN sing 274 n n C2' C1' NCN sing 275 n n C2' H2' NCN sing 276 n n O2' "HO'2" NCN sing 277 n n C1' N1 NCN sing 278 n n C1' H1' NCN sing 279 n n N1 C6 NCN sing 280 n y N1 C2 NCN doub 281 n y C6 C5 NCN doub 282 n y C6 H6 NCN sing 283 n n C5 C4 NCN sing 284 n y C5 H5 NCN sing 285 n n C4 C3 NCN doub 286 n y C4 H4 NCN sing 287 n n C3 C2 NCN sing 288 n y C3 C7 NCN sing 289 n n C2 H2 NCN sing 290 n n C7 O7 NCN sing 291 n n C7 O8 NCN doub 292 n n O7 HO7 NCN sing 293 n n # _atom_sites.entry_id 1L4K _atom_sites.fract_transf_matrix[1][1] 0.013908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021022 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 34A A 1 990 990 34A 34A . C 3 NCN A 1 991 991 NCN NCN . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1003 1003 HOH HOH . D 4 HOH A 3 1004 1004 HOH HOH . D 4 HOH A 4 1005 1005 HOH HOH . D 4 HOH A 5 1006 1006 HOH HOH . D 4 HOH A 6 1007 1007 HOH HOH . D 4 HOH A 7 1008 1008 HOH HOH . D 4 HOH A 8 1009 1009 HOH HOH . D 4 HOH A 9 1010 1010 HOH HOH . D 4 HOH A 10 1011 1011 HOH HOH . D 4 HOH A 11 1012 1012 HOH HOH . D 4 HOH A 12 1013 1013 HOH HOH . D 4 HOH A 13 1014 1014 HOH HOH . D 4 HOH A 14 1015 1015 HOH HOH . D 4 HOH A 15 1016 1016 HOH HOH . D 4 HOH A 16 1017 1017 HOH HOH . D 4 HOH A 17 1018 1018 HOH HOH . D 4 HOH A 18 1019 1019 HOH HOH . D 4 HOH A 19 1020 1020 HOH HOH . D 4 HOH A 20 1021 1021 HOH HOH . D 4 HOH A 21 1022 1022 HOH HOH . D 4 HOH A 22 1023 1023 HOH HOH . D 4 HOH A 23 1024 1024 HOH HOH . D 4 HOH A 24 1025 1025 HOH HOH . D 4 HOH A 25 1026 1026 HOH HOH . D 4 HOH A 26 1027 1027 HOH HOH . D 4 HOH A 27 1028 1028 HOH HOH . D 4 HOH A 28 1029 1029 HOH HOH . D 4 HOH A 29 1030 1030 HOH HOH . D 4 HOH A 30 1031 1031 HOH HOH . D 4 HOH A 31 1033 1033 HOH HOH . D 4 HOH A 32 1034 1034 HOH HOH . D 4 HOH A 33 1035 1035 HOH HOH . D 4 HOH A 34 1036 1036 HOH HOH . D 4 HOH A 35 1037 1037 HOH HOH . D 4 HOH A 36 1039 1039 HOH HOH . D 4 HOH A 37 1040 1040 HOH HOH . D 4 HOH A 38 1041 1041 HOH HOH . D 4 HOH A 39 1042 1042 HOH HOH . D 4 HOH A 40 1043 1043 HOH HOH . D 4 HOH A 41 1044 1044 HOH HOH . D 4 HOH A 42 1045 1045 HOH HOH . D 4 HOH A 43 1046 1046 HOH HOH . D 4 HOH A 44 1047 1047 HOH HOH . D 4 HOH A 45 1048 1048 HOH HOH . D 4 HOH A 46 1049 1049 HOH HOH . D 4 HOH A 47 1050 1050 HOH HOH . D 4 HOH A 48 1051 1051 HOH HOH . D 4 HOH A 49 1052 1052 HOH HOH . D 4 HOH A 50 1053 1053 HOH HOH . D 4 HOH A 51 1054 1054 HOH HOH . D 4 HOH A 52 1055 1055 HOH HOH . D 4 HOH A 53 1057 1057 HOH HOH . D 4 HOH A 54 1058 1058 HOH HOH . D 4 HOH A 55 1059 1059 HOH HOH . D 4 HOH A 56 1060 1060 HOH HOH . D 4 HOH A 57 1061 1061 HOH HOH . D 4 HOH A 58 1062 1062 HOH HOH . D 4 HOH A 59 1063 1063 HOH HOH . D 4 HOH A 60 1064 1064 HOH HOH . D 4 HOH A 61 1065 1065 HOH HOH . D 4 HOH A 62 1066 1066 HOH HOH . D 4 HOH A 63 1067 1067 HOH HOH . D 4 HOH A 64 1068 1068 HOH HOH . D 4 HOH A 65 1069 1069 HOH HOH . D 4 HOH A 66 1070 1070 HOH HOH . D 4 HOH A 67 1071 1071 HOH HOH . D 4 HOH A 68 1072 1072 HOH HOH . D 4 HOH A 69 1073 1073 HOH HOH . D 4 HOH A 70 1075 1075 HOH HOH . D 4 HOH A 71 1076 1076 HOH HOH . D 4 HOH A 72 1078 1078 HOH HOH . D 4 HOH A 73 1079 1079 HOH HOH . D 4 HOH A 74 1080 1080 HOH HOH . D 4 HOH A 75 1084 1084 HOH HOH . D 4 HOH A 76 1085 1085 HOH HOH . D 4 HOH A 77 1086 1086 HOH HOH . D 4 HOH A 78 1087 1087 HOH HOH . D 4 HOH A 79 1089 1089 HOH HOH . D 4 HOH A 80 1092 1092 HOH HOH . D 4 HOH A 81 1093 1093 HOH HOH . D 4 HOH A 82 1094 1094 HOH HOH . D 4 HOH A 83 1095 1095 HOH HOH . D 4 HOH A 84 1099 1099 HOH HOH . D 4 HOH A 85 1101 1101 HOH HOH . D 4 HOH A 86 1102 1102 HOH HOH . D 4 HOH A 87 1106 1106 HOH HOH . D 4 HOH A 88 1107 1107 HOH HOH . D 4 HOH A 89 1108 1108 HOH HOH . D 4 HOH A 90 1110 1110 HOH HOH . D 4 HOH A 91 1112 1112 HOH HOH . D 4 HOH A 92 1113 1113 HOH HOH . D 4 HOH A 93 1115 1115 HOH HOH . D 4 HOH A 94 1116 1116 HOH HOH . D 4 HOH A 95 1118 1118 HOH HOH . D 4 HOH A 96 1119 1119 HOH HOH . D 4 HOH A 97 1120 1120 HOH HOH . D 4 HOH A 98 1121 1121 HOH HOH . D 4 HOH A 99 1122 1122 HOH HOH . D 4 HOH A 100 1124 1124 HOH HOH . D 4 HOH A 101 1125 1125 HOH HOH . D 4 HOH A 102 1129 1129 HOH HOH . D 4 HOH A 103 1130 1130 HOH HOH . D 4 HOH A 104 1131 1131 HOH HOH . D 4 HOH A 105 1200 1200 HOH HOH . D 4 HOH A 106 1201 1201 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . C 3 59.387 39.342 5.894 1 13.39 ? P NCN 991 A 1 HETATM 2 O O1P NCN . . . C 3 59.157 38.125 5.06 1 11.77 ? O1P NCN 991 A 1 HETATM 3 O O2P NCN . . . C 3 59.698 40.523 5.016 1 10.88 ? O2P NCN 991 A 1 HETATM 4 O O3P NCN . . . C 3 60.641 39.113 6.92 1 12.57 ? O3P NCN 991 A 1 HETATM 5 O O5' NCN . . . C 3 58.088 39.653 6.763 1 14.45 ? O5' NCN 991 A 1 HETATM 6 C C5' NCN . . . C 3 57.59 38.634 7.669 1 15.54 ? C5' NCN 991 A 1 HETATM 7 C C4' NCN . . . C 3 57.552 39.139 8.977 1 16.9 ? C4' NCN 991 A 1 HETATM 8 O O4' NCN . . . C 3 56.723 40.349 9.042 1 21.56 ? O4' NCN 991 A 1 HETATM 9 C C3' NCN . . . C 3 56.992 38.19 10.029 1 19.37 ? C3' NCN 991 A 1 HETATM 10 O O3' NCN . . . C 3 57.677 38.252 11.315 1 13.78 ? O3' NCN 991 A 1 HETATM 11 C C2' NCN . . . C 3 55.483 38.607 10.082 1 18.66 ? C2' NCN 991 A 1 HETATM 12 O O2' NCN . . . C 3 55.018 38.554 11.462 1 20.5 ? O2' NCN 991 A 1 HETATM 13 C C1' NCN . . . C 3 55.42 40.021 9.455 1 21.05 ? C1' NCN 991 A 1 HETATM 14 N N1 NCN . . . C 3 54.433 40.209 8.31 1 18.14 ? N1 NCN 991 A 1 HETATM 15 C C6 NCN . . . C 3 54.806 40.88 7.089 1 17.04 ? C6 NCN 991 A 1 HETATM 16 C C5 NCN . . . C 3 53.769 40.97 6.144 1 16.11 ? C5 NCN 991 A 1 HETATM 17 C C4 NCN . . . C 3 52.434 40.482 6.287 1 14.15 ? C4 NCN 991 A 1 HETATM 18 C C3 NCN . . . C 3 52.202 39.829 7.577 1 18.02 ? C3 NCN 991 A 1 HETATM 19 C C2 NCN . . . C 3 53.179 39.7 8.564 1 17.23 ? C2 NCN 991 A 1 HETATM 20 C C7 NCN . . . C 3 50.748 39.369 7.585 1 14.26 ? C7 NCN 991 A 1 HETATM 21 O O7 NCN . . . C 3 49.926 39.504 6.704 1 15.89 ? O7 NCN 991 A 1 HETATM 22 O O8 NCN . . . C 3 50.502 38.767 8.757 1 12.72 ? O8 NCN 991 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 22 #