data_1L4L # _model_server_result.job_id ox9NFa5_YF5jR52aefCSBw _model_server_result.datetime_utc '2024-11-24 09:46:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l4l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":991}' # _entry.id 1L4L # _exptl.entry_id 1L4L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L4L _cell.length_a 71.77 _cell.length_b 90 _cell.length_c 47.58 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L4L _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.77 90 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 237 n n P O2P NCN doub 238 n n P O3P NCN sing 239 n n P O5' NCN sing 240 n n O1P HOP1 NCN sing 241 n n O5' C5' NCN sing 242 n n C5' C4' NCN sing 243 n n C5' "H5'1" NCN sing 244 n n C5' "H5'2" NCN sing 245 n n C4' O4' NCN sing 246 n n C4' C3' NCN sing 247 n n C4' H4' NCN sing 248 n n O4' C1' NCN sing 249 n n C3' O3' NCN sing 250 n n C3' C2' NCN sing 251 n n C3' H3' NCN sing 252 n n O3' "HO'3" NCN sing 253 n n C2' O2' NCN sing 254 n n C2' C1' NCN sing 255 n n C2' H2' NCN sing 256 n n O2' "HO'2" NCN sing 257 n n C1' N1 NCN sing 258 n n C1' H1' NCN sing 259 n n N1 C6 NCN sing 260 n y N1 C2 NCN doub 261 n y C6 C5 NCN doub 262 n y C6 H6 NCN sing 263 n n C5 C4 NCN sing 264 n y C5 H5 NCN sing 265 n n C4 C3 NCN doub 266 n y C4 H4 NCN sing 267 n n C3 C2 NCN sing 268 n y C3 C7 NCN sing 269 n n C2 H2 NCN sing 270 n n C7 O7 NCN sing 271 n n C7 O8 NCN doub 272 n n O7 HO7 NCN sing 273 n n # _atom_sites.entry_id 1L4L _atom_sites.fract_transf_matrix[1][1] 0.013933 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021017 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XYD A 1 990 990 XYD XYD . C 3 NCN A 1 991 991 NCN NCN . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1002 1002 HOH HOH . D 4 HOH A 3 1003 1003 HOH HOH . D 4 HOH A 4 1004 1004 HOH HOH . D 4 HOH A 5 1005 1005 HOH HOH . D 4 HOH A 6 1006 1006 HOH HOH . D 4 HOH A 7 1007 1007 HOH HOH . D 4 HOH A 8 1008 1008 HOH HOH . D 4 HOH A 9 1009 1009 HOH HOH . D 4 HOH A 10 1010 1010 HOH HOH . D 4 HOH A 11 1011 1011 HOH HOH . D 4 HOH A 12 1012 1012 HOH HOH . D 4 HOH A 13 1013 1013 HOH HOH . D 4 HOH A 14 1014 1014 HOH HOH . D 4 HOH A 15 1015 1015 HOH HOH . D 4 HOH A 16 1016 1016 HOH HOH . D 4 HOH A 17 1017 1017 HOH HOH . D 4 HOH A 18 1018 1018 HOH HOH . D 4 HOH A 19 1019 1019 HOH HOH . D 4 HOH A 20 1020 1020 HOH HOH . D 4 HOH A 21 1021 1021 HOH HOH . D 4 HOH A 22 1022 1022 HOH HOH . D 4 HOH A 23 1023 1023 HOH HOH . D 4 HOH A 24 1024 1024 HOH HOH . D 4 HOH A 25 1025 1025 HOH HOH . D 4 HOH A 26 1026 1026 HOH HOH . D 4 HOH A 27 1027 1027 HOH HOH . D 4 HOH A 28 1028 1028 HOH HOH . D 4 HOH A 29 1029 1029 HOH HOH . D 4 HOH A 30 1030 1030 HOH HOH . D 4 HOH A 31 1031 1031 HOH HOH . D 4 HOH A 32 1032 1032 HOH HOH . D 4 HOH A 33 1033 1033 HOH HOH . D 4 HOH A 34 1034 1034 HOH HOH . D 4 HOH A 35 1035 1035 HOH HOH . D 4 HOH A 36 1037 1037 HOH HOH . D 4 HOH A 37 1038 1038 HOH HOH . D 4 HOH A 38 1039 1039 HOH HOH . D 4 HOH A 39 1040 1040 HOH HOH . D 4 HOH A 40 1041 1041 HOH HOH . D 4 HOH A 41 1042 1042 HOH HOH . D 4 HOH A 42 1043 1043 HOH HOH . D 4 HOH A 43 1044 1044 HOH HOH . D 4 HOH A 44 1046 1046 HOH HOH . D 4 HOH A 45 1047 1047 HOH HOH . D 4 HOH A 46 1048 1048 HOH HOH . D 4 HOH A 47 1049 1049 HOH HOH . D 4 HOH A 48 1050 1050 HOH HOH . D 4 HOH A 49 1051 1051 HOH HOH . D 4 HOH A 50 1052 1052 HOH HOH . D 4 HOH A 51 1053 1053 HOH HOH . D 4 HOH A 52 1054 1054 HOH HOH . D 4 HOH A 53 1055 1055 HOH HOH . D 4 HOH A 54 1056 1056 HOH HOH . D 4 HOH A 55 1057 1057 HOH HOH . D 4 HOH A 56 1058 1058 HOH HOH . D 4 HOH A 57 1059 1059 HOH HOH . D 4 HOH A 58 1060 1060 HOH HOH . D 4 HOH A 59 1061 1061 HOH HOH . D 4 HOH A 60 1062 1062 HOH HOH . D 4 HOH A 61 1063 1063 HOH HOH . D 4 HOH A 62 1064 1064 HOH HOH . D 4 HOH A 63 1065 1065 HOH HOH . D 4 HOH A 64 1067 1067 HOH HOH . D 4 HOH A 65 1068 1068 HOH HOH . D 4 HOH A 66 1069 1069 HOH HOH . D 4 HOH A 67 1070 1070 HOH HOH . D 4 HOH A 68 1071 1071 HOH HOH . D 4 HOH A 69 1072 1072 HOH HOH . D 4 HOH A 70 1073 1073 HOH HOH . D 4 HOH A 71 1074 1074 HOH HOH . D 4 HOH A 72 1075 1075 HOH HOH . D 4 HOH A 73 1076 1076 HOH HOH . D 4 HOH A 74 1077 1077 HOH HOH . D 4 HOH A 75 1078 1078 HOH HOH . D 4 HOH A 76 1079 1079 HOH HOH . D 4 HOH A 77 1080 1080 HOH HOH . D 4 HOH A 78 1081 1081 HOH HOH . D 4 HOH A 79 1082 1082 HOH HOH . D 4 HOH A 80 1083 1083 HOH HOH . D 4 HOH A 81 1084 1084 HOH HOH . D 4 HOH A 82 1085 1085 HOH HOH . D 4 HOH A 83 1086 1086 HOH HOH . D 4 HOH A 84 1088 1088 HOH HOH . D 4 HOH A 85 1089 1089 HOH HOH . D 4 HOH A 86 1090 1090 HOH HOH . D 4 HOH A 87 1091 1091 HOH HOH . D 4 HOH A 88 1092 1092 HOH HOH . D 4 HOH A 89 1093 1093 HOH HOH . D 4 HOH A 90 1094 1094 HOH HOH . D 4 HOH A 91 1097 1097 HOH HOH . D 4 HOH A 92 1099 1099 HOH HOH . D 4 HOH A 93 1100 1100 HOH HOH . D 4 HOH A 94 1101 1101 HOH HOH . D 4 HOH A 95 1104 1104 HOH HOH . D 4 HOH A 96 1105 1105 HOH HOH . D 4 HOH A 97 1106 1106 HOH HOH . D 4 HOH A 98 1107 1107 HOH HOH . D 4 HOH A 99 1108 1108 HOH HOH . D 4 HOH A 100 1109 1109 HOH HOH . D 4 HOH A 101 1110 1110 HOH HOH . D 4 HOH A 102 1111 1111 HOH HOH . D 4 HOH A 103 1112 1112 HOH HOH . D 4 HOH A 104 1113 1113 HOH HOH . D 4 HOH A 105 1114 1114 HOH HOH . D 4 HOH A 106 1115 1115 HOH HOH . D 4 HOH A 107 1116 1116 HOH HOH . D 4 HOH A 108 1118 1118 HOH HOH . D 4 HOH A 109 1119 1119 HOH HOH . D 4 HOH A 110 1122 1122 HOH HOH . D 4 HOH A 111 1123 1123 HOH HOH . D 4 HOH A 112 1124 1124 HOH HOH . D 4 HOH A 113 1125 1125 HOH HOH . D 4 HOH A 114 1127 1127 HOH HOH . D 4 HOH A 115 1128 1128 HOH HOH . D 4 HOH A 116 1129 1129 HOH HOH . D 4 HOH A 117 1130 1130 HOH HOH . D 4 HOH A 118 1132 1132 HOH HOH . D 4 HOH A 119 1133 1133 HOH HOH . D 4 HOH A 120 1136 1136 HOH HOH . D 4 HOH A 121 1137 1137 HOH HOH . D 4 HOH A 122 1138 1138 HOH HOH . D 4 HOH A 123 1141 1141 HOH HOH . D 4 HOH A 124 1200 1200 HOH HOH . D 4 HOH A 125 1201 1201 HOH HOH . D 4 HOH A 126 1202 1202 HOH HOH . D 4 HOH A 127 1203 1203 HOH HOH . D 4 HOH A 128 1204 1204 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . C 3 59.299 39.37 5.906 1 21.46 ? P NCN 991 A 1 HETATM 2 O O1P NCN . . . C 3 59.094 38.15 5.078 1 15.8 ? O1P NCN 991 A 1 HETATM 3 O O2P NCN . . . C 3 59.591 40.548 5.039 1 15.91 ? O2P NCN 991 A 1 HETATM 4 O O3P NCN . . . C 3 60.532 39.142 6.936 1 17.8 ? O3P NCN 991 A 1 HETATM 5 O O5' NCN . . . C 3 57.987 39.657 6.74 1 20.78 ? O5' NCN 991 A 1 HETATM 6 C C5' NCN . . . C 3 57.504 38.635 7.625 1 26.48 ? C5' NCN 991 A 1 HETATM 7 C C4' NCN . . . C 3 57.428 39.2 9 1 27.97 ? C4' NCN 991 A 1 HETATM 8 O O4' NCN . . . C 3 56.581 40.382 8.978 1 32.06 ? O4' NCN 991 A 1 HETATM 9 C C3' NCN . . . C 3 56.867 38.255 10.035 1 30.8 ? C3' NCN 991 A 1 HETATM 10 O O3' NCN . . . C 3 57.562 38.284 11.314 1 26.1 ? O3' NCN 991 A 1 HETATM 11 C C2' NCN . . . C 3 55.368 38.676 10.09 1 28.85 ? C2' NCN 991 A 1 HETATM 12 O O2' NCN . . . C 3 54.956 38.697 11.487 1 32.17 ? O2' NCN 991 A 1 HETATM 13 C C1' NCN . . . C 3 55.294 40.058 9.406 1 30.51 ? C1' NCN 991 A 1 HETATM 14 N N1 NCN . . . C 3 54.303 40.212 8.264 1 26.39 ? N1 NCN 991 A 1 HETATM 15 C C6 NCN . . . C 3 54.672 40.843 7.024 1 26.13 ? C6 NCN 991 A 1 HETATM 16 C C5 NCN . . . C 3 53.629 40.925 6.078 1 24.84 ? C5 NCN 991 A 1 HETATM 17 C C4 NCN . . . C 3 52.289 40.462 6.252 1 24.56 ? C4 NCN 991 A 1 HETATM 18 C C3 NCN . . . C 3 52.06 39.844 7.569 1 24.8 ? C3 NCN 991 A 1 HETATM 19 C C2 NCN . . . C 3 53.048 39.727 8.546 1 24.02 ? C2 NCN 991 A 1 HETATM 20 C C7 NCN . . . C 3 50.594 39.4 7.623 1 22.31 ? C7 NCN 991 A 1 HETATM 21 O O7 NCN . . . C 3 49.751 39.521 6.767 1 23.77 ? O7 NCN 991 A 1 HETATM 22 O O8 NCN . . . C 3 50.362 38.828 8.815 1 25.2 ? O8 NCN 991 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 22 #