data_1L4M # _model_server_result.job_id 8nIBsv3WtZB0E6oInRkJag _model_server_result.datetime_utc '2024-11-24 11:07:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l4m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":991}' # _entry.id 1L4M # _exptl.entry_id 1L4M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 335.204 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICOTINATE MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L4M _cell.length_a 71.93 _cell.length_b 90.03 _cell.length_c 47.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L4M _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.93 90.03 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.032 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H14 N O9 P' _chem_comp.formula_weight 335.204 _chem_comp.id NCN _chem_comp.mon_nstd_flag . _chem_comp.name 'NICOTINATE MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms NAMN # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P NCN sing 255 n n P O2P NCN doub 256 n n P O3P NCN sing 257 n n P O5' NCN sing 258 n n O1P HOP1 NCN sing 259 n n O5' C5' NCN sing 260 n n C5' C4' NCN sing 261 n n C5' "H5'1" NCN sing 262 n n C5' "H5'2" NCN sing 263 n n C4' O4' NCN sing 264 n n C4' C3' NCN sing 265 n n C4' H4' NCN sing 266 n n O4' C1' NCN sing 267 n n C3' O3' NCN sing 268 n n C3' C2' NCN sing 269 n n C3' H3' NCN sing 270 n n O3' "HO'3" NCN sing 271 n n C2' O2' NCN sing 272 n n C2' C1' NCN sing 273 n n C2' H2' NCN sing 274 n n O2' "HO'2" NCN sing 275 n n C1' N1 NCN sing 276 n n C1' H1' NCN sing 277 n n N1 C6 NCN sing 278 n y N1 C2 NCN doub 279 n y C6 C5 NCN doub 280 n y C6 H6 NCN sing 281 n n C5 C4 NCN sing 282 n y C5 H5 NCN sing 283 n n C4 C3 NCN doub 284 n y C4 H4 NCN sing 285 n n C3 C2 NCN sing 286 n y C3 C7 NCN sing 287 n n C2 H2 NCN sing 288 n n C7 O7 NCN sing 289 n n C7 O8 NCN doub 290 n n O7 HO7 NCN sing 291 n n # _atom_sites.entry_id 1L4M _atom_sites.fract_transf_matrix[1][1] 0.013902 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011107 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02103 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 2AC A 1 990 990 2AC 2AC . C 3 NCN A 1 991 991 NCN NCN . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1002 1002 HOH HOH . D 4 HOH A 3 1003 1003 HOH HOH . D 4 HOH A 4 1004 1004 HOH HOH . D 4 HOH A 5 1005 1005 HOH HOH . D 4 HOH A 6 1006 1006 HOH HOH . D 4 HOH A 7 1007 1007 HOH HOH . D 4 HOH A 8 1008 1008 HOH HOH . D 4 HOH A 9 1009 1009 HOH HOH . D 4 HOH A 10 1010 1010 HOH HOH . D 4 HOH A 11 1011 1011 HOH HOH . D 4 HOH A 12 1012 1012 HOH HOH . D 4 HOH A 13 1013 1013 HOH HOH . D 4 HOH A 14 1014 1014 HOH HOH . D 4 HOH A 15 1016 1016 HOH HOH . D 4 HOH A 16 1022 1022 HOH HOH . D 4 HOH A 17 1026 1026 HOH HOH . D 4 HOH A 18 1028 1028 HOH HOH . D 4 HOH A 19 1030 1030 HOH HOH . D 4 HOH A 20 1031 1031 HOH HOH . D 4 HOH A 21 1032 1032 HOH HOH . D 4 HOH A 22 1033 1033 HOH HOH . D 4 HOH A 23 1034 1034 HOH HOH . D 4 HOH A 24 1037 1037 HOH HOH . D 4 HOH A 25 1038 1038 HOH HOH . D 4 HOH A 26 1042 1042 HOH HOH . D 4 HOH A 27 1044 1044 HOH HOH . D 4 HOH A 28 1048 1048 HOH HOH . D 4 HOH A 29 1049 1049 HOH HOH . D 4 HOH A 30 1053 1053 HOH HOH . D 4 HOH A 31 1054 1054 HOH HOH . D 4 HOH A 32 1055 1055 HOH HOH . D 4 HOH A 33 1056 1056 HOH HOH . D 4 HOH A 34 1058 1058 HOH HOH . D 4 HOH A 35 1059 1059 HOH HOH . D 4 HOH A 36 1060 1060 HOH HOH . D 4 HOH A 37 1061 1061 HOH HOH . D 4 HOH A 38 1063 1063 HOH HOH . D 4 HOH A 39 1067 1067 HOH HOH . D 4 HOH A 40 1072 1072 HOH HOH . D 4 HOH A 41 1074 1074 HOH HOH . D 4 HOH A 42 1076 1076 HOH HOH . D 4 HOH A 43 1082 1082 HOH HOH . D 4 HOH A 44 1090 1090 HOH HOH . D 4 HOH A 45 1091 1091 HOH HOH . D 4 HOH A 46 1095 1095 HOH HOH . D 4 HOH A 47 1096 1096 HOH HOH . D 4 HOH A 48 1099 1099 HOH HOH . D 4 HOH A 49 1101 1101 HOH HOH . D 4 HOH A 50 1103 1103 HOH HOH . D 4 HOH A 51 1107 1107 HOH HOH . D 4 HOH A 52 1108 1108 HOH HOH . D 4 HOH A 53 1109 1109 HOH HOH . D 4 HOH A 54 1110 1110 HOH HOH . D 4 HOH A 55 1111 1111 HOH HOH . D 4 HOH A 56 1116 1116 HOH HOH . D 4 HOH A 57 1117 1117 HOH HOH . D 4 HOH A 58 1200 1200 HOH HOH . D 4 HOH A 59 1201 1201 HOH HOH . D 4 HOH A 60 1202 1202 HOH HOH . D 4 HOH A 61 1203 1203 HOH HOH . D 4 HOH A 62 1204 1204 HOH HOH . D 4 HOH A 63 1205 1205 HOH HOH . D 4 HOH A 64 1206 1206 HOH HOH . D 4 HOH A 65 1207 1207 HOH HOH . D 4 HOH A 66 1209 1209 HOH HOH . D 4 HOH A 67 1210 1210 HOH HOH . D 4 HOH A 68 1211 1211 HOH HOH . D 4 HOH A 69 1212 1212 HOH HOH . D 4 HOH A 70 1213 1213 HOH HOH . D 4 HOH A 71 1214 1214 HOH HOH . D 4 HOH A 72 1216 1216 HOH HOH . D 4 HOH A 73 1219 1219 HOH HOH . D 4 HOH A 74 1220 1220 HOH HOH . D 4 HOH A 75 1221 1221 HOH HOH . D 4 HOH A 76 1222 1222 HOH HOH . D 4 HOH A 77 1223 1223 HOH HOH . D 4 HOH A 78 1224 1224 HOH HOH . D 4 HOH A 79 1225 1225 HOH HOH . D 4 HOH A 80 1226 1226 HOH HOH . D 4 HOH A 81 1227 1227 HOH HOH . D 4 HOH A 82 1228 1228 HOH HOH . D 4 HOH A 83 1229 1229 HOH HOH . D 4 HOH A 84 1230 1230 HOH HOH . D 4 HOH A 85 1231 1231 HOH HOH . D 4 HOH A 86 1233 1233 HOH HOH . D 4 HOH A 87 1235 1235 HOH HOH . D 4 HOH A 88 1236 1236 HOH HOH . D 4 HOH A 89 1237 1237 HOH HOH . D 4 HOH A 90 1238 1238 HOH HOH . D 4 HOH A 91 1239 1239 HOH HOH . D 4 HOH A 92 1240 1240 HOH HOH . D 4 HOH A 93 1243 1243 HOH HOH . D 4 HOH A 94 1244 1244 HOH HOH . D 4 HOH A 95 1250 1250 HOH HOH . D 4 HOH A 96 1251 1251 HOH HOH . D 4 HOH A 97 1252 1252 HOH HOH . D 4 HOH A 98 1253 1253 HOH HOH . D 4 HOH A 99 1254 1254 HOH HOH . D 4 HOH A 100 1256 1256 HOH HOH . D 4 HOH A 101 1257 1257 HOH HOH . D 4 HOH A 102 1258 1258 HOH HOH . D 4 HOH A 103 1259 1259 HOH HOH . D 4 HOH A 104 1260 1260 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P NCN . . . C 3 59.43 39.296 5.901 1 28.11 ? P NCN 991 A 1 HETATM 2 O O1P NCN . . . C 3 59.27 38.077 5.065 1 25.03 ? O1P NCN 991 A 1 HETATM 3 O O2P NCN . . . C 3 59.717 40.471 5.034 1 26.24 ? O2P NCN 991 A 1 HETATM 4 O O3P NCN . . . C 3 60.648 39.112 6.936 1 25.75 ? O3P NCN 991 A 1 HETATM 5 O O5' NCN . . . C 3 58.094 39.574 6.71 1 27.31 ? O5' NCN 991 A 1 HETATM 6 C C5' NCN . . . C 3 57.598 38.564 7.607 1 30.36 ? C5' NCN 991 A 1 HETATM 7 C C4' NCN . . . C 3 57.552 39.139 8.991 1 30.94 ? C4' NCN 991 A 1 HETATM 8 O O4' NCN . . . C 3 56.715 40.336 9.003 1 32.92 ? O4' NCN 991 A 1 HETATM 9 C C3' NCN . . . C 3 56.997 38.211 10.052 1 31.32 ? C3' NCN 991 A 1 HETATM 10 O O3' NCN . . . C 3 57.694 38.302 11.318 1 29.51 ? O3' NCN 991 A 1 HETATM 11 C C2' NCN . . . C 3 55.491 38.629 10.109 1 30.75 ? C2' NCN 991 A 1 HETATM 12 O O2' NCN . . . C 3 55.048 38.615 11.495 1 32.54 ? O2' NCN 991 A 1 HETATM 13 C C1' NCN . . . C 3 55.426 40.019 9.447 1 31.09 ? C1' NCN 991 A 1 HETATM 14 N N1 NCN . . . C 3 54.433 40.199 8.332 1 30.79 ? N1 NCN 991 A 1 HETATM 15 C C6 NCN . . . C 3 54.801 40.848 7.098 1 30.15 ? C6 NCN 991 A 1 HETATM 16 C C5 NCN . . . C 3 53.758 40.949 6.168 1 31.08 ? C5 NCN 991 A 1 HETATM 17 C C4 NCN . . . C 3 52.421 40.472 6.336 1 30.4 ? C4 NCN 991 A 1 HETATM 18 C C3 NCN . . . C 3 52.193 39.841 7.641 1 29.72 ? C3 NCN 991 A 1 HETATM 19 C C2 NCN . . . C 3 53.18 39.698 8.606 1 29.4 ? C2 NCN 991 A 1 HETATM 20 C C7 NCN . . . C 3 50.734 39.389 7.671 1 28.25 ? C7 NCN 991 A 1 HETATM 21 O O7 NCN . . . C 3 49.893 39.527 6.811 1 30.19 ? O7 NCN 991 A 1 HETATM 22 O O8 NCN . . . C 3 50.499 38.798 8.844 1 28.84 ? O8 NCN 991 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 22 #