data_1L56 # _model_server_result.job_id caXZLTdre0IyPhhbT6Y2sA _model_server_result.datetime_utc '2025-07-05 12:49:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l56 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":165}' # _entry.id 1L56 # _exptl.entry_id 1L56 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BETA-MERCAPTOETHANOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1L56 _cell.length_a 61.1 _cell.length_b 61.1 _cell.length_c 96.4 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L56 _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 97 A CYS 97 1_555 B S2 BME . A BME 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? covale ? covale2 C S2 BME . A BME 900 1_555 C S2 BME . A BME 900 5_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.907 ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id BME _chem_comp.mon_nstd_flag . _chem_comp.name BETA-MERCAPTOETHANOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BME sing 70 n n C1 O1 BME sing 71 n n C1 H11 BME sing 72 n n C1 H12 BME sing 73 n n C2 S2 BME sing 74 n n C2 H21 BME sing 75 n n C2 H22 BME sing 76 n n O1 HO1 BME sing 77 n n S2 HS2 BME sing 78 n n # _atom_sites.entry_id 1L56 _atom_sites.fract_transf_matrix[1][1] 0.016367 _atom_sites.fract_transf_matrix[1][2] 0.009449 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018899 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010373 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BME A 1 165 97 BME SEO . C 2 BME A 1 900 900 BME SEO . D 3 HOH A 1 166 166 HOH HOH . D 3 HOH A 2 167 167 HOH HOH . D 3 HOH A 3 168 168 HOH HOH . D 3 HOH A 4 169 169 HOH HOH . D 3 HOH A 5 170 170 HOH HOH . D 3 HOH A 6 171 171 HOH HOH . D 3 HOH A 7 172 172 HOH HOH . D 3 HOH A 8 173 173 HOH HOH . D 3 HOH A 9 175 175 HOH HOH . D 3 HOH A 10 176 176 HOH HOH . D 3 HOH A 11 178 178 HOH HOH . D 3 HOH A 12 179 179 HOH HOH . D 3 HOH A 13 180 180 HOH HOH . D 3 HOH A 14 181 181 HOH HOH . D 3 HOH A 15 182 182 HOH HOH . D 3 HOH A 16 184 184 HOH HOH . D 3 HOH A 17 185 185 HOH HOH . D 3 HOH A 18 186 186 HOH HOH . D 3 HOH A 19 187 187 HOH HOH . D 3 HOH A 20 188 188 HOH HOH . D 3 HOH A 21 190 190 HOH HOH . D 3 HOH A 22 191 191 HOH HOH . D 3 HOH A 23 192 192 HOH HOH . D 3 HOH A 24 194 194 HOH HOH . D 3 HOH A 25 195 195 HOH HOH . D 3 HOH A 26 197 197 HOH HOH . D 3 HOH A 27 201 201 HOH HOH . D 3 HOH A 28 203 203 HOH HOH . D 3 HOH A 29 204 204 HOH HOH . D 3 HOH A 30 206 206 HOH HOH . D 3 HOH A 31 207 207 HOH HOH . D 3 HOH A 32 208 208 HOH HOH . D 3 HOH A 33 209 209 HOH HOH . D 3 HOH A 34 211 211 HOH HOH . D 3 HOH A 35 212 212 HOH HOH . D 3 HOH A 36 214 214 HOH HOH . D 3 HOH A 37 215 215 HOH HOH . D 3 HOH A 38 216 216 HOH HOH . D 3 HOH A 39 217 217 HOH HOH . D 3 HOH A 40 218 218 HOH HOH . D 3 HOH A 41 219 219 HOH HOH . D 3 HOH A 42 220 220 HOH HOH . D 3 HOH A 43 221 221 HOH HOH . D 3 HOH A 44 222 222 HOH HOH . D 3 HOH A 45 223 223 HOH HOH . D 3 HOH A 46 227 227 HOH HOH . D 3 HOH A 47 229 229 HOH HOH . D 3 HOH A 48 230 230 HOH HOH . D 3 HOH A 49 232 232 HOH HOH . D 3 HOH A 50 233 233 HOH HOH . D 3 HOH A 51 235 235 HOH HOH . D 3 HOH A 52 237 237 HOH HOH . D 3 HOH A 53 238 238 HOH HOH . D 3 HOH A 54 241 241 HOH HOH . D 3 HOH A 55 242 242 HOH HOH . D 3 HOH A 56 243 243 HOH HOH . D 3 HOH A 57 244 244 HOH HOH . D 3 HOH A 58 246 246 HOH HOH . D 3 HOH A 59 247 247 HOH HOH . D 3 HOH A 60 250 250 HOH HOH . D 3 HOH A 61 252 252 HOH HOH . D 3 HOH A 62 256 256 HOH HOH . D 3 HOH A 63 260 260 HOH HOH . D 3 HOH A 64 261 261 HOH HOH . D 3 HOH A 65 265 265 HOH HOH . D 3 HOH A 66 266 266 HOH HOH . D 3 HOH A 67 268 268 HOH HOH . D 3 HOH A 68 269 269 HOH HOH . D 3 HOH A 69 270 270 HOH HOH . D 3 HOH A 70 273 273 HOH HOH . D 3 HOH A 71 274 274 HOH HOH . D 3 HOH A 72 277 277 HOH HOH . D 3 HOH A 73 280 280 HOH HOH . D 3 HOH A 74 282 282 HOH HOH . D 3 HOH A 75 287 287 HOH HOH . D 3 HOH A 76 290 290 HOH HOH . D 3 HOH A 77 295 295 HOH HOH . D 3 HOH A 78 297 297 HOH HOH . D 3 HOH A 79 298 298 HOH HOH . D 3 HOH A 80 303 303 HOH HOH . D 3 HOH A 81 304 304 HOH HOH . D 3 HOH A 82 312 312 HOH HOH . D 3 HOH A 83 314 314 HOH HOH . D 3 HOH A 84 315 315 HOH HOH . D 3 HOH A 85 316 316 HOH HOH . D 3 HOH A 86 318 318 HOH HOH . D 3 HOH A 87 319 319 HOH HOH . D 3 HOH A 88 321 321 HOH HOH . D 3 HOH A 89 324 324 HOH HOH . D 3 HOH A 90 326 326 HOH HOH . D 3 HOH A 91 327 327 HOH HOH . D 3 HOH A 92 333 333 HOH HOH . D 3 HOH A 93 338 338 HOH HOH . D 3 HOH A 94 340 340 HOH HOH . D 3 HOH A 95 348 348 HOH HOH . D 3 HOH A 96 351 351 HOH HOH . D 3 HOH A 97 352 352 HOH HOH . D 3 HOH A 98 353 353 HOH HOH . D 3 HOH A 99 355 355 HOH HOH . D 3 HOH A 100 356 356 HOH HOH . D 3 HOH A 101 361 361 HOH HOH . D 3 HOH A 102 363 363 HOH HOH . D 3 HOH A 103 364 364 HOH HOH . D 3 HOH A 104 401 401 HOH HOH . D 3 HOH A 105 402 402 HOH HOH . D 3 HOH A 106 403 403 HOH HOH . D 3 HOH A 107 404 404 HOH HOH . D 3 HOH A 108 405 405 HOH HOH . D 3 HOH A 109 407 407 HOH HOH . D 3 HOH A 110 408 408 HOH HOH . D 3 HOH A 111 411 411 HOH HOH . D 3 HOH A 112 412 412 HOH HOH . D 3 HOH A 113 414 414 HOH HOH . D 3 HOH A 114 415 415 HOH HOH . D 3 HOH A 115 417 417 HOH HOH . D 3 HOH A 116 418 418 HOH HOH . D 3 HOH A 117 419 419 HOH HOH . D 3 HOH A 118 517 517 HOH HOH . D 3 HOH A 119 518 518 HOH HOH . D 3 HOH A 120 519 519 HOH HOH . D 3 HOH A 121 520 520 HOH HOH . D 3 HOH A 122 523 523 HOH HOH . D 3 HOH A 123 524 524 HOH HOH . D 3 HOH A 124 525 525 HOH HOH . D 3 HOH A 125 526 526 HOH HOH . D 3 HOH A 126 527 527 HOH HOH . D 3 HOH A 127 528 528 HOH HOH . D 3 HOH A 128 529 529 HOH HOH . D 3 HOH A 129 530 530 HOH HOH . D 3 HOH A 130 531 531 HOH HOH . D 3 HOH A 131 532 532 HOH HOH . D 3 HOH A 132 533 533 HOH HOH . D 3 HOH A 133 534 534 HOH HOH . D 3 HOH A 134 537 537 HOH HOH . D 3 HOH A 135 538 538 HOH HOH . D 3 HOH A 136 539 539 HOH HOH . D 3 HOH A 137 540 540 HOH HOH . D 3 HOH A 138 541 541 HOH HOH . D 3 HOH A 139 542 542 HOH HOH . D 3 HOH A 140 543 543 HOH HOH . D 3 HOH A 141 544 544 HOH HOH . D 3 HOH A 142 545 545 HOH HOH . D 3 HOH A 143 546 546 HOH HOH . D 3 HOH A 144 547 547 HOH HOH . D 3 HOH A 145 548 548 HOH HOH . D 3 HOH A 146 549 549 HOH HOH . D 3 HOH A 147 602 602 HOH HOH . D 3 HOH A 148 603 603 HOH HOH . D 3 HOH A 149 604 604 HOH HOH . D 3 HOH A 150 605 605 HOH HOH . D 3 HOH A 151 606 606 HOH HOH . D 3 HOH A 152 607 607 HOH HOH . D 3 HOH A 153 608 608 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BME . . . B 2 33.924 -2.595 9.425 1 24.1 ? C1 BME 165 A 1 HETATM 2 C C2 BME . . . B 2 33.416 -1.141 9.546 1 34.14 ? C2 BME 165 A 1 HETATM 3 O O1 BME . . . B 2 34.736 -2.931 10.548 1 33.64 ? O1 BME 165 A 1 HETATM 4 S S2 BME . . . B 2 34.768 0.075 9.89 1 31.42 ? S2 BME 165 A 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 947 _model_server_stats.encode_time_ms 45 _model_server_stats.element_count 4 #