data_1L5B # _model_server_result.job_id gnXRVJCZ6ABWBGJELu8wHA _model_server_result.datetime_utc '2025-04-28 01:06:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l5b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 1L5B # _exptl.entry_id 1L5B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L5B _cell.length_a 61.966 _cell.length_b 61.966 _cell.length_c 148.4 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5B _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 8 A CYS 8 1_555 A SG CYS 22 A CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? disulf ? disulf2 A SG CYS 58 A CYS 58 1_555 A SG CYS 73 A CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.422 ? disulf ? disulf3 B SG CYS 8 B CYS 8 1_555 B SG CYS 22 B CYS 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? disulf ? disulf4 B SG CYS 58 B CYS 58 1_555 B SG CYS 73 B CYS 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc1 A O SER 38 A SER 38 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc2 A OE1 GLN 50 A GLN 50 1_555 C NA NA . A NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc3 C NA NA . A NA 302 1_555 E O HOH . A HOH 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc4 C NA NA . A NA 302 1_555 E O HOH . A HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc5 C NA NA . A NA 302 1_555 B O SER 38 B SER 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc6 C NA NA . A NA 302 1_555 B OE1 GLN 50 B GLN 50 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.567 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1L5B _atom_sites.fract_transf_matrix[1][1] 0.016138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016138 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006739 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 302 302 NA NA . D 3 NHE A 1 301 301 NHE CHE . E 4 HOH A 1 303 2 HOH HOH . E 4 HOH A 2 304 3 HOH HOH . E 4 HOH A 3 305 4 HOH HOH . E 4 HOH A 4 306 5 HOH HOH . E 4 HOH A 5 307 10 HOH HOH . E 4 HOH A 6 308 11 HOH HOH . E 4 HOH A 7 309 13 HOH HOH . E 4 HOH A 8 310 14 HOH HOH . E 4 HOH A 9 311 18 HOH HOH . E 4 HOH A 10 312 23 HOH HOH . E 4 HOH A 11 313 25 HOH HOH . E 4 HOH A 12 314 32 HOH HOH . E 4 HOH A 13 315 33 HOH HOH . E 4 HOH A 14 316 34 HOH HOH . E 4 HOH A 15 317 39 HOH HOH . E 4 HOH A 16 318 42 HOH HOH . E 4 HOH A 17 319 44 HOH HOH . E 4 HOH A 18 320 45 HOH HOH . E 4 HOH A 19 321 46 HOH HOH . E 4 HOH A 20 322 48 HOH HOH . E 4 HOH A 21 323 50 HOH HOH . E 4 HOH A 22 324 52 HOH HOH . E 4 HOH A 23 325 53 HOH HOH . E 4 HOH A 24 326 54 HOH HOH . E 4 HOH A 25 327 55 HOH HOH . E 4 HOH A 26 328 56 HOH HOH . E 4 HOH A 27 329 58 HOH HOH . E 4 HOH A 28 330 63 HOH HOH . E 4 HOH A 29 331 64 HOH HOH . E 4 HOH A 30 332 65 HOH HOH . E 4 HOH A 31 333 68 HOH HOH . E 4 HOH A 32 334 69 HOH HOH . E 4 HOH A 33 335 72 HOH HOH . E 4 HOH A 34 336 74 HOH HOH . E 4 HOH A 35 337 76 HOH HOH . E 4 HOH A 36 338 77 HOH HOH . E 4 HOH A 37 339 78 HOH HOH . E 4 HOH A 38 340 79 HOH HOH . E 4 HOH A 39 341 80 HOH HOH . E 4 HOH A 40 342 82 HOH HOH . E 4 HOH A 41 343 83 HOH HOH . E 4 HOH A 42 344 85 HOH HOH . E 4 HOH A 43 345 88 HOH HOH . E 4 HOH A 44 346 90 HOH HOH . E 4 HOH A 45 347 93 HOH HOH . E 4 HOH A 46 348 95 HOH HOH . E 4 HOH A 47 349 101 HOH HOH . E 4 HOH A 48 350 102 HOH HOH . E 4 HOH A 49 351 103 HOH HOH . E 4 HOH A 50 352 104 HOH HOH . E 4 HOH A 51 353 105 HOH HOH . E 4 HOH A 52 354 110 HOH HOH . E 4 HOH A 53 355 111 HOH HOH . E 4 HOH A 54 356 113 HOH HOH . E 4 HOH A 55 357 116 HOH HOH . E 4 HOH A 56 358 117 HOH HOH . E 4 HOH A 57 359 120 HOH HOH . E 4 HOH A 58 360 123 HOH HOH . E 4 HOH A 59 361 125 HOH HOH . E 4 HOH A 60 362 126 HOH HOH . E 4 HOH A 61 363 128 HOH HOH . E 4 HOH A 62 364 129 HOH HOH . E 4 HOH A 63 365 132 HOH HOH . E 4 HOH A 64 366 133 HOH HOH . E 4 HOH A 65 367 134 HOH HOH . E 4 HOH A 66 368 135 HOH HOH . E 4 HOH A 67 369 136 HOH HOH . E 4 HOH A 68 370 139 HOH HOH . E 4 HOH A 69 371 140 HOH HOH . E 4 HOH A 70 372 142 HOH HOH . E 4 HOH A 71 373 143 HOH HOH . E 4 HOH A 72 374 144 HOH HOH . E 4 HOH A 73 375 145 HOH HOH . E 4 HOH A 74 376 146 HOH HOH . E 4 HOH A 75 377 149 HOH HOH . E 4 HOH A 76 378 150 HOH HOH . E 4 HOH A 77 379 151 HOH HOH . E 4 HOH A 78 380 155 HOH HOH . E 4 HOH A 79 381 156 HOH HOH . E 4 HOH A 80 382 157 HOH HOH . E 4 HOH A 81 383 158 HOH HOH . E 4 HOH A 82 384 159 HOH HOH . E 4 HOH A 83 385 161 HOH HOH . E 4 HOH A 84 386 162 HOH HOH . E 4 HOH A 85 387 163 HOH HOH . E 4 HOH A 86 388 164 HOH HOH . E 4 HOH A 87 389 165 HOH HOH . E 4 HOH A 88 390 166 HOH HOH . E 4 HOH A 89 391 167 HOH HOH . E 4 HOH A 90 392 169 HOH HOH . E 4 HOH A 91 393 173 HOH HOH . E 4 HOH A 92 394 174 HOH HOH . E 4 HOH A 93 395 175 HOH HOH . E 4 HOH A 94 396 176 HOH HOH . E 4 HOH A 95 397 178 HOH HOH . E 4 HOH A 96 398 179 HOH HOH . E 4 HOH A 97 399 181 HOH HOH . E 4 HOH A 98 400 184 HOH HOH . E 4 HOH A 99 401 185 HOH HOH . E 4 HOH A 100 402 188 HOH HOH . E 4 HOH A 101 403 189 HOH HOH . F 4 HOH B 1 102 1 HOH HOH . F 4 HOH B 2 103 6 HOH HOH . F 4 HOH B 3 104 7 HOH HOH . F 4 HOH B 4 105 8 HOH HOH . F 4 HOH B 5 106 9 HOH HOH . F 4 HOH B 6 107 12 HOH HOH . F 4 HOH B 7 108 15 HOH HOH . F 4 HOH B 8 109 16 HOH HOH . F 4 HOH B 9 110 17 HOH HOH . F 4 HOH B 10 111 19 HOH HOH . F 4 HOH B 11 112 20 HOH HOH . F 4 HOH B 12 113 21 HOH HOH . F 4 HOH B 13 114 22 HOH HOH . F 4 HOH B 14 115 24 HOH HOH . F 4 HOH B 15 116 26 HOH HOH . F 4 HOH B 16 117 27 HOH HOH . F 4 HOH B 17 118 28 HOH HOH . F 4 HOH B 18 119 29 HOH HOH . F 4 HOH B 19 120 30 HOH HOH . F 4 HOH B 20 121 31 HOH HOH . F 4 HOH B 21 122 35 HOH HOH . F 4 HOH B 22 123 36 HOH HOH . F 4 HOH B 23 124 37 HOH HOH . F 4 HOH B 24 125 38 HOH HOH . F 4 HOH B 25 126 40 HOH HOH . F 4 HOH B 26 127 41 HOH HOH . F 4 HOH B 27 128 43 HOH HOH . F 4 HOH B 28 129 47 HOH HOH . F 4 HOH B 29 130 49 HOH HOH . F 4 HOH B 30 131 51 HOH HOH . F 4 HOH B 31 132 57 HOH HOH . F 4 HOH B 32 133 59 HOH HOH . F 4 HOH B 33 134 60 HOH HOH . F 4 HOH B 34 135 61 HOH HOH . F 4 HOH B 35 136 62 HOH HOH . F 4 HOH B 36 137 66 HOH HOH . F 4 HOH B 37 138 67 HOH HOH . F 4 HOH B 38 139 70 HOH HOH . F 4 HOH B 39 140 71 HOH HOH . F 4 HOH B 40 141 73 HOH HOH . F 4 HOH B 41 142 75 HOH HOH . F 4 HOH B 42 143 81 HOH HOH . F 4 HOH B 43 144 84 HOH HOH . F 4 HOH B 44 145 86 HOH HOH . F 4 HOH B 45 146 87 HOH HOH . F 4 HOH B 46 147 89 HOH HOH . F 4 HOH B 47 148 91 HOH HOH . F 4 HOH B 48 149 92 HOH HOH . F 4 HOH B 49 150 94 HOH HOH . F 4 HOH B 50 151 96 HOH HOH . F 4 HOH B 51 152 97 HOH HOH . F 4 HOH B 52 153 98 HOH HOH . F 4 HOH B 53 154 99 HOH HOH . F 4 HOH B 54 155 100 HOH HOH . F 4 HOH B 55 156 106 HOH HOH . F 4 HOH B 56 157 107 HOH HOH . F 4 HOH B 57 158 108 HOH HOH . F 4 HOH B 58 159 109 HOH HOH . F 4 HOH B 59 160 112 HOH HOH . F 4 HOH B 60 161 114 HOH HOH . F 4 HOH B 61 162 115 HOH HOH . F 4 HOH B 62 163 118 HOH HOH . F 4 HOH B 63 164 119 HOH HOH . F 4 HOH B 64 165 121 HOH HOH . F 4 HOH B 65 166 122 HOH HOH . F 4 HOH B 66 167 124 HOH HOH . F 4 HOH B 67 168 127 HOH HOH . F 4 HOH B 68 169 130 HOH HOH . F 4 HOH B 69 170 131 HOH HOH . F 4 HOH B 70 171 137 HOH HOH . F 4 HOH B 71 172 138 HOH HOH . F 4 HOH B 72 173 141 HOH HOH . F 4 HOH B 73 174 147 HOH HOH . F 4 HOH B 74 175 148 HOH HOH . F 4 HOH B 75 176 152 HOH HOH . F 4 HOH B 76 177 153 HOH HOH . F 4 HOH B 77 178 154 HOH HOH . F 4 HOH B 78 179 160 HOH HOH . F 4 HOH B 79 180 168 HOH HOH . F 4 HOH B 80 181 170 HOH HOH . F 4 HOH B 81 182 171 HOH HOH . F 4 HOH B 82 183 172 HOH HOH . F 4 HOH B 83 184 177 HOH HOH . F 4 HOH B 84 185 180 HOH HOH . F 4 HOH B 85 186 182 HOH HOH . F 4 HOH B 86 187 183 HOH HOH . F 4 HOH B 87 188 186 HOH HOH . F 4 HOH B 88 189 187 HOH HOH . F 4 HOH B 89 190 190 HOH HOH . F 4 HOH B 90 191 191 HOH HOH . F 4 HOH B 91 192 192 HOH HOH . F 4 HOH B 92 193 193 HOH HOH . F 4 HOH B 93 194 194 HOH HOH . F 4 HOH B 94 195 195 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 25.979 _atom_site.Cartn_y 35.872 _atom_site.Cartn_z 119.938 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 60.94 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 846 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #