data_1L5F # _model_server_result.job_id FWx3LZQbCAuJ4yb3fbk4uQ _model_server_result.datetime_utc '2024-11-13 10:51:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l5f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":990}' # _entry.id 1L5F # _exptl.entry_id 1L5F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.136 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BENZIMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L5F _cell.length_a 71.53 _cell.length_b 90 _cell.length_c 47.43 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5F _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.53 90 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C7 H6 N2' _chem_comp.formula_weight 118.136 _chem_comp.id BZI _chem_comp.mon_nstd_flag . _chem_comp.name BENZIMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 BZI sing 70 n y N1 C7A BZI sing 71 n y N1 HN1 BZI sing 72 n n C2 N3 BZI doub 73 n y C2 H2 BZI sing 74 n n N3 C3A BZI sing 75 n y C3A C4 BZI doub 76 n y C3A C7A BZI sing 77 n y C4 C5 BZI sing 78 n y C4 H4 BZI sing 79 n n C5 C6 BZI doub 80 n y C5 H5 BZI sing 81 n n C6 C7 BZI sing 82 n y C6 H6 BZI sing 83 n n C7 C7A BZI doub 84 n y C7 H7 BZI sing 85 n n # _atom_sites.entry_id 1L5F _atom_sites.fract_transf_matrix[1][1] 0.01398 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021084 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 992 992 PO4 PI . C 2 PO4 A 1 991 991 PO4 PI . D 3 BZI A 1 990 990 BZI BZI . E 4 HOH A 1 401 401 HOH HOH . E 4 HOH A 2 402 402 HOH HOH . E 4 HOH A 3 403 403 HOH HOH . E 4 HOH A 4 404 404 HOH HOH . E 4 HOH A 5 405 405 HOH HOH . E 4 HOH A 6 406 406 HOH HOH . E 4 HOH A 7 407 407 HOH HOH . E 4 HOH A 8 408 408 HOH HOH . E 4 HOH A 9 409 409 HOH HOH . E 4 HOH A 10 410 410 HOH HOH . E 4 HOH A 11 411 411 HOH HOH . E 4 HOH A 12 412 412 HOH HOH . E 4 HOH A 13 413 413 HOH HOH . E 4 HOH A 14 414 414 HOH HOH . E 4 HOH A 15 416 416 HOH HOH . E 4 HOH A 16 417 417 HOH HOH . E 4 HOH A 17 419 419 HOH HOH . E 4 HOH A 18 420 420 HOH HOH . E 4 HOH A 19 421 421 HOH HOH . E 4 HOH A 20 422 422 HOH HOH . E 4 HOH A 21 424 424 HOH HOH . E 4 HOH A 22 425 425 HOH HOH . E 4 HOH A 23 426 426 HOH HOH . E 4 HOH A 24 427 427 HOH HOH . E 4 HOH A 25 429 429 HOH HOH . E 4 HOH A 26 430 430 HOH HOH . E 4 HOH A 27 432 432 HOH HOH . E 4 HOH A 28 433 433 HOH HOH . E 4 HOH A 29 434 434 HOH HOH . E 4 HOH A 30 435 435 HOH HOH . E 4 HOH A 31 436 436 HOH HOH . E 4 HOH A 32 437 437 HOH HOH . E 4 HOH A 33 438 438 HOH HOH . E 4 HOH A 34 440 440 HOH HOH . E 4 HOH A 35 441 441 HOH HOH . E 4 HOH A 36 442 442 HOH HOH . E 4 HOH A 37 443 443 HOH HOH . E 4 HOH A 38 444 444 HOH HOH . E 4 HOH A 39 446 446 HOH HOH . E 4 HOH A 40 448 448 HOH HOH . E 4 HOH A 41 450 450 HOH HOH . E 4 HOH A 42 451 451 HOH HOH . E 4 HOH A 43 452 452 HOH HOH . E 4 HOH A 44 454 454 HOH HOH . E 4 HOH A 45 455 455 HOH HOH . E 4 HOH A 46 456 456 HOH HOH . E 4 HOH A 47 457 457 HOH HOH . E 4 HOH A 48 459 459 HOH HOH . E 4 HOH A 49 460 460 HOH HOH . E 4 HOH A 50 461 461 HOH HOH . E 4 HOH A 51 462 462 HOH HOH . E 4 HOH A 52 463 463 HOH HOH . E 4 HOH A 53 464 464 HOH HOH . E 4 HOH A 54 465 465 HOH HOH . E 4 HOH A 55 466 466 HOH HOH . E 4 HOH A 56 467 467 HOH HOH . E 4 HOH A 57 468 468 HOH HOH . E 4 HOH A 58 469 469 HOH HOH . E 4 HOH A 59 470 470 HOH HOH . E 4 HOH A 60 472 472 HOH HOH . E 4 HOH A 61 473 473 HOH HOH . E 4 HOH A 62 474 474 HOH HOH . E 4 HOH A 63 476 476 HOH HOH . E 4 HOH A 64 477 477 HOH HOH . E 4 HOH A 65 478 478 HOH HOH . E 4 HOH A 66 479 479 HOH HOH . E 4 HOH A 67 480 480 HOH HOH . E 4 HOH A 68 481 481 HOH HOH . E 4 HOH A 69 482 482 HOH HOH . E 4 HOH A 70 483 483 HOH HOH . E 4 HOH A 71 484 484 HOH HOH . E 4 HOH A 72 485 485 HOH HOH . E 4 HOH A 73 487 487 HOH HOH . E 4 HOH A 74 488 488 HOH HOH . E 4 HOH A 75 489 489 HOH HOH . E 4 HOH A 76 490 490 HOH HOH . E 4 HOH A 77 491 491 HOH HOH . E 4 HOH A 78 492 492 HOH HOH . E 4 HOH A 79 494 494 HOH HOH . E 4 HOH A 80 495 495 HOH HOH . E 4 HOH A 81 496 496 HOH HOH . E 4 HOH A 82 500 500 HOH HOH . E 4 HOH A 83 501 501 HOH HOH . E 4 HOH A 84 502 502 HOH HOH . E 4 HOH A 85 503 503 HOH HOH . E 4 HOH A 86 504 504 HOH HOH . E 4 HOH A 87 505 505 HOH HOH . E 4 HOH A 88 511 511 HOH HOH . E 4 HOH A 89 512 512 HOH HOH . E 4 HOH A 90 517 517 HOH HOH . E 4 HOH A 91 522 522 HOH HOH . E 4 HOH A 92 526 526 HOH HOH . E 4 HOH A 93 533 533 HOH HOH . E 4 HOH A 94 535 535 HOH HOH . E 4 HOH A 95 536 536 HOH HOH . E 4 HOH A 96 551 551 HOH HOH . E 4 HOH A 97 552 552 HOH HOH . E 4 HOH A 98 553 553 HOH HOH . E 4 HOH A 99 559 559 HOH HOH . E 4 HOH A 100 560 560 HOH HOH . E 4 HOH A 101 562 562 HOH HOH . E 4 HOH A 102 563 563 HOH HOH . E 4 HOH A 103 568 568 HOH HOH . E 4 HOH A 104 573 573 HOH HOH . E 4 HOH A 105 574 574 HOH HOH . E 4 HOH A 106 578 578 HOH HOH . E 4 HOH A 107 579 579 HOH HOH . E 4 HOH A 108 580 580 HOH HOH . E 4 HOH A 109 587 587 HOH HOH . E 4 HOH A 110 588 588 HOH HOH . E 4 HOH A 111 592 592 HOH HOH . E 4 HOH A 112 593 593 HOH HOH . E 4 HOH A 113 594 594 HOH HOH . E 4 HOH A 114 595 595 HOH HOH . E 4 HOH A 115 596 596 HOH HOH . E 4 HOH A 116 600 600 HOH HOH . E 4 HOH A 117 601 601 HOH HOH . E 4 HOH A 118 602 602 HOH HOH . E 4 HOH A 119 604 604 HOH HOH . E 4 HOH A 120 605 605 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 BZI . . . D 3 57.642 41.487 12.52 1 27.79 ? N1 BZI 990 A 1 HETATM 2 C C2 BZI . . . D 3 56.731 41.34 13.472 1 27.72 ? C2 BZI 990 A 1 HETATM 3 N N3 BZI . . . D 3 56.857 42.234 14.485 1 28.02 ? N3 BZI 990 A 1 HETATM 4 C C3A BZI . . . D 3 57.951 43.046 14.176 1 25.95 ? C3A BZI 990 A 1 HETATM 5 C C4 BZI . . . D 3 58.572 44.153 14.842 1 26.08 ? C4 BZI 990 A 1 HETATM 6 C C5 BZI . . . D 3 59.704 44.785 14.249 1 26.09 ? C5 BZI 990 A 1 HETATM 7 C C6 BZI . . . D 3 60.209 44.306 12.983 1 26.64 ? C6 BZI 990 A 1 HETATM 8 C C7 BZI . . . D 3 59.584 43.209 12.335 1 25.49 ? C7 BZI 990 A 1 HETATM 9 C C7A BZI . . . D 3 58.443 42.58 12.94 1 26.4 ? C7A BZI 990 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #