data_1L5L # _model_server_result.job_id tt4PWzYNb5LLEWr0Q60o-Q _model_server_result.datetime_utc '2024-11-16 19:07:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l5l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":990}' # _entry.id 1L5L # _exptl.entry_id 1L5L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 332.207 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-ALPHA-D-RIBOFURANOSYL-PURINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L5L _cell.length_a 71.64 _cell.length_b 89.89 _cell.length_c 47.69 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5L _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.64 89.89 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H13 N4 O7 P' _chem_comp.formula_weight 332.207 _chem_comp.id 7RP _chem_comp.mon_nstd_flag . _chem_comp.name "7-ALPHA-D-RIBOFURANOSYL-PURINE-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C8 N9 7RP doub 1 n y C8 N7 7RP sing 2 n y C8 H8 7RP sing 3 n n N9 C4 7RP sing 4 n y C4 C5 7RP doub 5 n y C4 N3 7RP sing 6 n y C5 N7 7RP sing 7 n y C5 C6 7RP sing 8 n y N7 C1' 7RP sing 9 n n N3 C2 7RP doub 10 n y C2 N1 7RP sing 11 n y C2 H2 7RP sing 12 n n N1 C6 7RP doub 13 n y C6 H6 7RP sing 14 n n P O1P 7RP doub 15 n n P O2P 7RP sing 16 n n P O3P 7RP sing 17 n n P O5' 7RP sing 18 n n O2P HOP2 7RP sing 19 n n O3P HOP3 7RP sing 20 n n O5' C5' 7RP sing 21 n n C5' C4' 7RP sing 22 n n C5' "H5'1" 7RP sing 23 n n C5' "H5'2" 7RP sing 24 n n C4' O4' 7RP sing 25 n n C4' C3' 7RP sing 26 n n C4' H4' 7RP sing 27 n n O4' C1' 7RP sing 28 n n C3' O3' 7RP sing 29 n n C3' C2' 7RP sing 30 n n C3' H3' 7RP sing 31 n n O3' "HO'3" 7RP sing 32 n n C2' O2' 7RP sing 33 n n C2' C1' 7RP sing 34 n n C2' H2' 7RP sing 35 n n O2' "HO'2" 7RP sing 36 n n C1' H1' 7RP sing 37 n n # _atom_sites.entry_id 1L5L _atom_sites.fract_transf_matrix[1][1] 0.013959 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020969 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7RP A 1 990 990 7RP 7RP . C 3 NIO A 1 991 991 NIO NIO . D 4 HOH A 1 992 992 HOH HOH . D 4 HOH A 2 993 993 HOH HOH . D 4 HOH A 3 994 994 HOH HOH . D 4 HOH A 4 995 995 HOH HOH . D 4 HOH A 5 996 996 HOH HOH . D 4 HOH A 6 997 997 HOH HOH . D 4 HOH A 7 998 998 HOH HOH . D 4 HOH A 8 999 999 HOH HOH . D 4 HOH A 9 1000 1000 HOH HOH . D 4 HOH A 10 1001 1001 HOH HOH . D 4 HOH A 11 1002 1002 HOH HOH . D 4 HOH A 12 1003 1003 HOH HOH . D 4 HOH A 13 1004 1004 HOH HOH . D 4 HOH A 14 1005 1005 HOH HOH . D 4 HOH A 15 1006 1006 HOH HOH . D 4 HOH A 16 1007 1007 HOH HOH . D 4 HOH A 17 1008 1008 HOH HOH . D 4 HOH A 18 1009 1009 HOH HOH . D 4 HOH A 19 1010 1010 HOH HOH . D 4 HOH A 20 1011 1011 HOH HOH . D 4 HOH A 21 1012 1012 HOH HOH . D 4 HOH A 22 1013 1013 HOH HOH . D 4 HOH A 23 1014 1014 HOH HOH . D 4 HOH A 24 1015 1015 HOH HOH . D 4 HOH A 25 1016 1016 HOH HOH . D 4 HOH A 26 1017 1017 HOH HOH . D 4 HOH A 27 1018 1018 HOH HOH . D 4 HOH A 28 1019 1019 HOH HOH . D 4 HOH A 29 1020 1020 HOH HOH . D 4 HOH A 30 1021 1021 HOH HOH . D 4 HOH A 31 1022 1022 HOH HOH . D 4 HOH A 32 1023 1023 HOH HOH . D 4 HOH A 33 1024 1024 HOH HOH . D 4 HOH A 34 1025 1025 HOH HOH . D 4 HOH A 35 1026 1026 HOH HOH . D 4 HOH A 36 1027 1027 HOH HOH . D 4 HOH A 37 1028 1028 HOH HOH . D 4 HOH A 38 1029 1029 HOH HOH . D 4 HOH A 39 1030 1030 HOH HOH . D 4 HOH A 40 1031 1031 HOH HOH . D 4 HOH A 41 1032 1032 HOH HOH . D 4 HOH A 42 1033 1033 HOH HOH . D 4 HOH A 43 1034 1034 HOH HOH . D 4 HOH A 44 1035 1035 HOH HOH . D 4 HOH A 45 1036 1036 HOH HOH . D 4 HOH A 46 1037 1037 HOH HOH . D 4 HOH A 47 1038 1038 HOH HOH . D 4 HOH A 48 1039 1039 HOH HOH . D 4 HOH A 49 1040 1040 HOH HOH . D 4 HOH A 50 1041 1041 HOH HOH . D 4 HOH A 51 1042 1042 HOH HOH . D 4 HOH A 52 1043 1043 HOH HOH . D 4 HOH A 53 1044 1044 HOH HOH . D 4 HOH A 54 1045 1045 HOH HOH . D 4 HOH A 55 1046 1046 HOH HOH . D 4 HOH A 56 1047 1047 HOH HOH . D 4 HOH A 57 1048 1048 HOH HOH . D 4 HOH A 58 1049 1049 HOH HOH . D 4 HOH A 59 1050 1050 HOH HOH . D 4 HOH A 60 1051 1051 HOH HOH . D 4 HOH A 61 1052 1052 HOH HOH . D 4 HOH A 62 1053 1053 HOH HOH . D 4 HOH A 63 1054 1054 HOH HOH . D 4 HOH A 64 1055 1055 HOH HOH . D 4 HOH A 65 1057 1057 HOH HOH . D 4 HOH A 66 1058 1058 HOH HOH . D 4 HOH A 67 1059 1059 HOH HOH . D 4 HOH A 68 1060 1060 HOH HOH . D 4 HOH A 69 1061 1061 HOH HOH . D 4 HOH A 70 1062 1062 HOH HOH . D 4 HOH A 71 1063 1063 HOH HOH . D 4 HOH A 72 1064 1064 HOH HOH . D 4 HOH A 73 1065 1065 HOH HOH . D 4 HOH A 74 1066 1066 HOH HOH . D 4 HOH A 75 1067 1067 HOH HOH . D 4 HOH A 76 1068 1068 HOH HOH . D 4 HOH A 77 1069 1069 HOH HOH . D 4 HOH A 78 1070 1070 HOH HOH . D 4 HOH A 79 1071 1071 HOH HOH . D 4 HOH A 80 1072 1072 HOH HOH . D 4 HOH A 81 1073 1073 HOH HOH . D 4 HOH A 82 1074 1074 HOH HOH . D 4 HOH A 83 1075 1075 HOH HOH . D 4 HOH A 84 1076 1076 HOH HOH . D 4 HOH A 85 1077 1077 HOH HOH . D 4 HOH A 86 1078 1078 HOH HOH . D 4 HOH A 87 1080 1080 HOH HOH . D 4 HOH A 88 1081 1081 HOH HOH . D 4 HOH A 89 1082 1082 HOH HOH . D 4 HOH A 90 1083 1083 HOH HOH . D 4 HOH A 91 1084 1084 HOH HOH . D 4 HOH A 92 1086 1086 HOH HOH . D 4 HOH A 93 1087 1087 HOH HOH . D 4 HOH A 94 1088 1088 HOH HOH . D 4 HOH A 95 1089 1089 HOH HOH . D 4 HOH A 96 1090 1090 HOH HOH . D 4 HOH A 97 1091 1091 HOH HOH . D 4 HOH A 98 1092 1092 HOH HOH . D 4 HOH A 99 1093 1093 HOH HOH . D 4 HOH A 100 1094 1094 HOH HOH . D 4 HOH A 101 1095 1095 HOH HOH . D 4 HOH A 102 1096 1096 HOH HOH . D 4 HOH A 103 1097 1097 HOH HOH . D 4 HOH A 104 1098 1098 HOH HOH . D 4 HOH A 105 1099 1099 HOH HOH . D 4 HOH A 106 1100 1100 HOH HOH . D 4 HOH A 107 1101 1101 HOH HOH . D 4 HOH A 108 1102 1102 HOH HOH . D 4 HOH A 109 1103 1103 HOH HOH . D 4 HOH A 110 1104 1104 HOH HOH . D 4 HOH A 111 1105 1105 HOH HOH . D 4 HOH A 112 1106 1106 HOH HOH . D 4 HOH A 113 1107 1107 HOH HOH . D 4 HOH A 114 1108 1108 HOH HOH . D 4 HOH A 115 1109 1109 HOH HOH . D 4 HOH A 116 1110 1110 HOH HOH . D 4 HOH A 117 1111 1111 HOH HOH . D 4 HOH A 118 1112 1112 HOH HOH . D 4 HOH A 119 1113 1113 HOH HOH . D 4 HOH A 120 1114 1114 HOH HOH . D 4 HOH A 121 1115 1115 HOH HOH . D 4 HOH A 122 1116 1116 HOH HOH . D 4 HOH A 123 1117 1117 HOH HOH . D 4 HOH A 124 1118 1118 HOH HOH . D 4 HOH A 125 1119 1119 HOH HOH . D 4 HOH A 126 1120 1120 HOH HOH . D 4 HOH A 127 1121 1121 HOH HOH . D 4 HOH A 128 1122 1122 HOH HOH . D 4 HOH A 129 1123 1123 HOH HOH . D 4 HOH A 130 1124 1124 HOH HOH . D 4 HOH A 131 1125 1125 HOH HOH . D 4 HOH A 132 1126 1126 HOH HOH . D 4 HOH A 133 1127 1127 HOH HOH . D 4 HOH A 134 1128 1128 HOH HOH . D 4 HOH A 135 1129 1129 HOH HOH . D 4 HOH A 136 1130 1130 HOH HOH . D 4 HOH A 137 1131 1131 HOH HOH . D 4 HOH A 138 1132 1132 HOH HOH . D 4 HOH A 139 1133 1133 HOH HOH . D 4 HOH A 140 1134 1134 HOH HOH . D 4 HOH A 141 1135 1135 HOH HOH . D 4 HOH A 142 1137 1137 HOH HOH . D 4 HOH A 143 1138 1138 HOH HOH . D 4 HOH A 144 1140 1140 HOH HOH . D 4 HOH A 145 1141 1141 HOH HOH . D 4 HOH A 146 1142 1142 HOH HOH . D 4 HOH A 147 1143 1143 HOH HOH . D 4 HOH A 148 1145 1145 HOH HOH . D 4 HOH A 149 1146 1146 HOH HOH . D 4 HOH A 150 1147 1147 HOH HOH . D 4 HOH A 151 1148 1148 HOH HOH . D 4 HOH A 152 1149 1149 HOH HOH . D 4 HOH A 153 1150 1150 HOH HOH . D 4 HOH A 154 1151 1151 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C8 7RP . . . B 2 56.025 40.887 13.15 1 14.44 ? C8 7RP 990 A 1 HETATM 2 N N9 7RP . . . B 2 56.585 41.545 14.167 1 14.93 ? N9 7RP 990 A 1 HETATM 3 C C4 7RP . . . B 2 57.721 42.089 13.683 1 13.89 ? C4 7RP 990 A 1 HETATM 4 C C5 7RP . . . B 2 57.793 41.707 12.335 1 14.91 ? C5 7RP 990 A 1 HETATM 5 N N7 7RP . . . B 2 56.7 40.936 11.998 1 13.26 ? N7 7RP 990 A 1 HETATM 6 N N3 7RP . . . B 2 58.603 42.85 14.379 1 16.03 ? N3 7RP 990 A 1 HETATM 7 C C2 7RP . . . B 2 59.647 43.244 13.59 1 14.09 ? C2 7RP 990 A 1 HETATM 8 N N1 7RP . . . B 2 59.843 42.938 12.259 1 13.28 ? N1 7RP 990 A 1 HETATM 9 C C6 7RP . . . B 2 58.946 42.172 11.584 1 12.92 ? C6 7RP 990 A 1 HETATM 10 P P 7RP . . . B 2 59.338 39.339 6.132 1 15.88 ? P 7RP 990 A 1 HETATM 11 O O1P 7RP . . . B 2 59.145 38.108 5.316 1 12.38 ? O1P 7RP 990 A 1 HETATM 12 O O2P 7RP . . . B 2 59.556 40.529 5.259 1 12.05 ? O2P 7RP 990 A 1 HETATM 13 O O3P 7RP . . . B 2 60.51 39.184 7.04 1 11.68 ? O3P 7RP 990 A 1 HETATM 14 O O5' 7RP . . . B 2 58.065 39.599 7.072 1 14.61 ? O5' 7RP 990 A 1 HETATM 15 C C5' 7RP . . . B 2 57.6 38.608 7.969 1 15.53 ? C5' 7RP 990 A 1 HETATM 16 C C4' 7RP . . . B 2 57.909 39.081 9.37 1 14.6 ? C4' 7RP 990 A 1 HETATM 17 O O4' 7RP . . . B 2 57.267 40.371 9.611 1 14.14 ? O4' 7RP 990 A 1 HETATM 18 C C3' 7RP . . . B 2 57.417 38.2 10.478 1 15.15 ? C3' 7RP 990 A 1 HETATM 19 O O3' 7RP . . . B 2 58.27 38.261 11.656 1 15.46 ? O3' 7RP 990 A 1 HETATM 20 C C2' 7RP . . . B 2 56.048 38.761 10.72 1 13.76 ? C2' 7RP 990 A 1 HETATM 21 O O2' 7RP . . . B 2 55.627 38.22 11.971 1 15.45 ? O2' 7RP 990 A 1 HETATM 22 C C1' 7RP . . . B 2 56.304 40.281 10.688 1 13.8 ? C1' 7RP 990 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 345 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 22 #