data_1L5M # _model_server_result.job_id 0Dlf21Fxxhmk6ZmbX88Hcg _model_server_result.datetime_utc '2024-10-12 21:22:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l5m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":990}' # _entry.id 1L5M # _exptl.entry_id 1L5M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 347.221 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "7-ALPHA-D-RIBOFURANOSYL-2-AMINOPURINE-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L5M _cell.length_a 71.74 _cell.length_b 90.17 _cell.length_c 47.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5M _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.74 90.17 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H14 N5 O7 P' _chem_comp.formula_weight 347.221 _chem_comp.id 7RA _chem_comp.mon_nstd_flag . _chem_comp.name "7-ALPHA-D-RIBOFURANOSYL-2-AMINOPURINE-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C5 7RA doub 1 n y C4 N3 7RA sing 2 n y C4 N9 7RA sing 3 n y C5 C6 7RA sing 4 n y C5 N7 7RA sing 5 n y C6 N1 7RA doub 6 n y C6 H6 7RA sing 7 n n N1 C2 7RA sing 8 n y C2 N3 7RA doub 9 n y C2 N10 7RA sing 10 n n N9 C8 7RA doub 11 n y C8 N7 7RA sing 12 n y C8 H8 7RA sing 13 n n N7 C1' 7RA sing 14 n n N10 H101 7RA sing 15 n n N10 H102 7RA sing 16 n n P O1P 7RA doub 17 n n P O2P 7RA sing 18 n n P O3P 7RA sing 19 n n P O5' 7RA sing 20 n n O2P HOP2 7RA sing 21 n n O3P HOP3 7RA sing 22 n n O5' C5' 7RA sing 23 n n C5' C4' 7RA sing 24 n n C5' "H5'1" 7RA sing 25 n n C5' "H5'2" 7RA sing 26 n n C4' O4' 7RA sing 27 n n C4' C3' 7RA sing 28 n n C4' H4' 7RA sing 29 n n O4' C1' 7RA sing 30 n n C3' O3' 7RA sing 31 n n C3' C2' 7RA sing 32 n n C3' H3' 7RA sing 33 n n O3' "HO'3" 7RA sing 34 n n C2' O2' 7RA sing 35 n n C2' C1' 7RA sing 36 n n C2' H2' 7RA sing 37 n n O2' "HO'2" 7RA sing 38 n n C1' H1' 7RA sing 39 n n # _atom_sites.entry_id 1L5M _atom_sites.fract_transf_matrix[1][1] 0.013939 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01109 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020951 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 7RA A 1 990 990 7RA 7RA . C 3 NIO A 1 991 991 NIO NIO . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1002 1002 HOH HOH . D 4 HOH A 3 1003 1003 HOH HOH . D 4 HOH A 4 1004 1004 HOH HOH . D 4 HOH A 5 1005 1005 HOH HOH . D 4 HOH A 6 1006 1006 HOH HOH . D 4 HOH A 7 1007 1007 HOH HOH . D 4 HOH A 8 1008 1008 HOH HOH . D 4 HOH A 9 1009 1009 HOH HOH . D 4 HOH A 10 1010 1010 HOH HOH . D 4 HOH A 11 1011 1011 HOH HOH . D 4 HOH A 12 1012 1012 HOH HOH . D 4 HOH A 13 1013 1013 HOH HOH . D 4 HOH A 14 1014 1014 HOH HOH . D 4 HOH A 15 1015 1015 HOH HOH . D 4 HOH A 16 1016 1016 HOH HOH . D 4 HOH A 17 1017 1017 HOH HOH . D 4 HOH A 18 1018 1018 HOH HOH . D 4 HOH A 19 1019 1019 HOH HOH . D 4 HOH A 20 1020 1020 HOH HOH . D 4 HOH A 21 1021 1021 HOH HOH . D 4 HOH A 22 1022 1022 HOH HOH . D 4 HOH A 23 1023 1023 HOH HOH . D 4 HOH A 24 1024 1024 HOH HOH . D 4 HOH A 25 1025 1025 HOH HOH . D 4 HOH A 26 1026 1026 HOH HOH . D 4 HOH A 27 1027 1027 HOH HOH . D 4 HOH A 28 1028 1028 HOH HOH . D 4 HOH A 29 1029 1029 HOH HOH . D 4 HOH A 30 1030 1030 HOH HOH . D 4 HOH A 31 1031 1031 HOH HOH . D 4 HOH A 32 1032 1032 HOH HOH . D 4 HOH A 33 1033 1033 HOH HOH . D 4 HOH A 34 1034 1034 HOH HOH . D 4 HOH A 35 1035 1035 HOH HOH . D 4 HOH A 36 1036 1036 HOH HOH . D 4 HOH A 37 1037 1037 HOH HOH . D 4 HOH A 38 1038 1038 HOH HOH . D 4 HOH A 39 1039 1039 HOH HOH . D 4 HOH A 40 1040 1040 HOH HOH . D 4 HOH A 41 1041 1041 HOH HOH . D 4 HOH A 42 1042 1042 HOH HOH . D 4 HOH A 43 1043 1043 HOH HOH . D 4 HOH A 44 1044 1044 HOH HOH . D 4 HOH A 45 1045 1045 HOH HOH . D 4 HOH A 46 1046 1046 HOH HOH . D 4 HOH A 47 1047 1047 HOH HOH . D 4 HOH A 48 1048 1048 HOH HOH . D 4 HOH A 49 1049 1049 HOH HOH . D 4 HOH A 50 1050 1050 HOH HOH . D 4 HOH A 51 1051 1051 HOH HOH . D 4 HOH A 52 1052 1052 HOH HOH . D 4 HOH A 53 1053 1053 HOH HOH . D 4 HOH A 54 1054 1054 HOH HOH . D 4 HOH A 55 1055 1055 HOH HOH . D 4 HOH A 56 1056 1056 HOH HOH . D 4 HOH A 57 1057 1057 HOH HOH . D 4 HOH A 58 1058 1058 HOH HOH . D 4 HOH A 59 1059 1059 HOH HOH . D 4 HOH A 60 1060 1060 HOH HOH . D 4 HOH A 61 1061 1061 HOH HOH . D 4 HOH A 62 1062 1062 HOH HOH . D 4 HOH A 63 1063 1063 HOH HOH . D 4 HOH A 64 1064 1064 HOH HOH . D 4 HOH A 65 1065 1065 HOH HOH . D 4 HOH A 66 1066 1066 HOH HOH . D 4 HOH A 67 1067 1067 HOH HOH . D 4 HOH A 68 1068 1068 HOH HOH . D 4 HOH A 69 1069 1069 HOH HOH . D 4 HOH A 70 1070 1070 HOH HOH . D 4 HOH A 71 1071 1071 HOH HOH . D 4 HOH A 72 1072 1072 HOH HOH . D 4 HOH A 73 1073 1073 HOH HOH . D 4 HOH A 74 1074 1074 HOH HOH . D 4 HOH A 75 1075 1075 HOH HOH . D 4 HOH A 76 1076 1076 HOH HOH . D 4 HOH A 77 1077 1077 HOH HOH . D 4 HOH A 78 1078 1078 HOH HOH . D 4 HOH A 79 1079 1079 HOH HOH . D 4 HOH A 80 1080 1080 HOH HOH . D 4 HOH A 81 1081 1081 HOH HOH . D 4 HOH A 82 1082 1082 HOH HOH . D 4 HOH A 83 1083 1083 HOH HOH . D 4 HOH A 84 1084 1084 HOH HOH . D 4 HOH A 85 1085 1085 HOH HOH . D 4 HOH A 86 1086 1086 HOH HOH . D 4 HOH A 87 1087 1087 HOH HOH . D 4 HOH A 88 1088 1088 HOH HOH . D 4 HOH A 89 1089 1089 HOH HOH . D 4 HOH A 90 1090 1090 HOH HOH . D 4 HOH A 91 1091 1091 HOH HOH . D 4 HOH A 92 1092 1092 HOH HOH . D 4 HOH A 93 1093 1093 HOH HOH . D 4 HOH A 94 1094 1094 HOH HOH . D 4 HOH A 95 1095 1095 HOH HOH . D 4 HOH A 96 1096 1096 HOH HOH . D 4 HOH A 97 1097 1097 HOH HOH . D 4 HOH A 98 1098 1098 HOH HOH . D 4 HOH A 99 1099 1099 HOH HOH . D 4 HOH A 100 1100 1100 HOH HOH . D 4 HOH A 101 1101 1101 HOH HOH . D 4 HOH A 102 1102 1102 HOH HOH . D 4 HOH A 103 1103 1103 HOH HOH . D 4 HOH A 104 1104 1104 HOH HOH . D 4 HOH A 105 1105 1105 HOH HOH . D 4 HOH A 106 1106 1106 HOH HOH . D 4 HOH A 107 1107 1107 HOH HOH . D 4 HOH A 108 1108 1108 HOH HOH . D 4 HOH A 109 1109 1109 HOH HOH . D 4 HOH A 110 1110 1110 HOH HOH . D 4 HOH A 111 1111 1111 HOH HOH . D 4 HOH A 112 1112 1112 HOH HOH . D 4 HOH A 113 1113 1113 HOH HOH . D 4 HOH A 114 1114 1114 HOH HOH . D 4 HOH A 115 1115 1115 HOH HOH . D 4 HOH A 116 1116 1116 HOH HOH . D 4 HOH A 117 1117 1117 HOH HOH . D 4 HOH A 118 1118 1118 HOH HOH . D 4 HOH A 119 1119 1119 HOH HOH . D 4 HOH A 120 1120 1120 HOH HOH . D 4 HOH A 121 1121 1121 HOH HOH . D 4 HOH A 122 1122 1122 HOH HOH . D 4 HOH A 123 1123 1123 HOH HOH . D 4 HOH A 124 1124 1124 HOH HOH . D 4 HOH A 125 1125 1125 HOH HOH . D 4 HOH A 126 1126 1126 HOH HOH . D 4 HOH A 127 1127 1127 HOH HOH . D 4 HOH A 128 1128 1128 HOH HOH . D 4 HOH A 129 1129 1129 HOH HOH . D 4 HOH A 130 1130 1130 HOH HOH . D 4 HOH A 131 1131 1131 HOH HOH . D 4 HOH A 132 1132 1132 HOH HOH . D 4 HOH A 133 1133 1133 HOH HOH . D 4 HOH A 134 1134 1134 HOH HOH . D 4 HOH A 135 1135 1135 HOH HOH . D 4 HOH A 136 1136 1136 HOH HOH . D 4 HOH A 137 1137 1137 HOH HOH . D 4 HOH A 138 1138 1138 HOH HOH . D 4 HOH A 139 1139 1139 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 7RA . . . B 2 57.467 42.219 13.695 1 14.35 ? C4 7RA 990 A 1 HETATM 2 C C5 7RA . . . B 2 57.637 41.784 12.369 1 14.09 ? C5 7RA 990 A 1 HETATM 3 C C6 7RA . . . B 2 58.784 42.242 11.645 1 12.32 ? C6 7RA 990 A 1 HETATM 4 N N1 7RA . . . B 2 59.646 43.089 12.301 1 11.95 ? N1 7RA 990 A 1 HETATM 5 C C2 7RA . . . B 2 59.432 43.487 13.603 1 14.44 ? C2 7RA 990 A 1 HETATM 6 N N3 7RA . . . B 2 58.348 43.058 14.314 1 14.86 ? N3 7RA 990 A 1 HETATM 7 N N9 7RA . . . B 2 56.341 41.665 14.138 1 15.93 ? N9 7RA 990 A 1 HETATM 8 C C8 7RA . . . B 2 55.828 40.936 13.148 1 14.91 ? C8 7RA 990 A 1 HETATM 9 N N7 7RA . . . B 2 56.59 40.961 12.032 1 14.39 ? N7 7RA 990 A 1 HETATM 10 N N10 7RA . . . B 2 60.338 44.349 14.215 1 16.52 ? N10 7RA 990 A 1 HETATM 11 P P 7RA . . . B 2 59.402 39.446 6.192 1 13.21 ? P 7RA 990 A 1 HETATM 12 O O1P 7RA . . . B 2 59.172 38.186 5.405 1 11.52 ? O1P 7RA 990 A 1 HETATM 13 O O2P 7RA . . . B 2 59.634 40.617 5.318 1 10.47 ? O2P 7RA 990 A 1 HETATM 14 O O3P 7RA . . . B 2 60.584 39.258 7.072 1 9.64 ? O3P 7RA 990 A 1 HETATM 15 O O5' 7RA . . . B 2 58.072 39.721 7.058 1 13.88 ? O5' 7RA 990 A 1 HETATM 16 C C5' 7RA . . . B 2 57.56 38.724 7.978 1 16.21 ? C5' 7RA 990 A 1 HETATM 17 C C4' 7RA . . . B 2 57.925 39.12 9.388 1 15.17 ? C4' 7RA 990 A 1 HETATM 18 O O4' 7RA . . . B 2 57.351 40.421 9.787 1 14.51 ? O4' 7RA 990 A 1 HETATM 19 C C3' 7RA . . . B 2 57.463 38.181 10.504 1 13.19 ? C3' 7RA 990 A 1 HETATM 20 O O3' 7RA . . . B 2 58.3 38.236 11.669 1 12.91 ? O3' 7RA 990 A 1 HETATM 21 C C2' 7RA . . . B 2 56.089 38.745 10.771 1 15.66 ? C2' 7RA 990 A 1 HETATM 22 O O2' 7RA . . . B 2 55.557 38.282 12.017 1 14.13 ? O2' 7RA 990 A 1 HETATM 23 C C1' 7RA . . . B 2 56.287 40.254 10.694 1 13.59 ? C1' 7RA 990 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #