data_1L5N # _model_server_result.job_id kuabCUlf6kvSqyS9khloZg _model_server_result.datetime_utc '2024-11-13 10:37:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":990}' # _entry.id 1L5N # _exptl.entry_id 1L5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L5N _cell.length_a 71.87 _cell.length_b 90.22 _cell.length_c 47.51 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5N _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 71.87 90.22 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 160 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 160 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 256 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 256 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.028 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 1L5N _atom_sites.fract_transf_matrix[1][1] 0.013914 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011084 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.021048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 991 991 PO4 PI . C 3 IMD A 1 990 990 IMD IMD . D 4 HOH A 1 1001 1001 HOH HOH . D 4 HOH A 2 1002 1002 HOH HOH . D 4 HOH A 3 1003 1003 HOH HOH . D 4 HOH A 4 1004 1004 HOH HOH . D 4 HOH A 5 1005 1005 HOH HOH . D 4 HOH A 6 1006 1006 HOH HOH . D 4 HOH A 7 1007 1007 HOH HOH . D 4 HOH A 8 1008 1008 HOH HOH . D 4 HOH A 9 1009 1009 HOH HOH . D 4 HOH A 10 1010 1010 HOH HOH . D 4 HOH A 11 1011 1011 HOH HOH . D 4 HOH A 12 1012 1012 HOH HOH . D 4 HOH A 13 1013 1013 HOH HOH . D 4 HOH A 14 1014 1014 HOH HOH . D 4 HOH A 15 1015 1015 HOH HOH . D 4 HOH A 16 1016 1016 HOH HOH . D 4 HOH A 17 1017 1017 HOH HOH . D 4 HOH A 18 1018 1018 HOH HOH . D 4 HOH A 19 1019 1019 HOH HOH . D 4 HOH A 20 1020 1020 HOH HOH . D 4 HOH A 21 1021 1021 HOH HOH . D 4 HOH A 22 1022 1022 HOH HOH . D 4 HOH A 23 1023 1023 HOH HOH . D 4 HOH A 24 1024 1024 HOH HOH . D 4 HOH A 25 1025 1025 HOH HOH . D 4 HOH A 26 1026 1026 HOH HOH . D 4 HOH A 27 1027 1027 HOH HOH . D 4 HOH A 28 1028 1028 HOH HOH . D 4 HOH A 29 1029 1029 HOH HOH . D 4 HOH A 30 1030 1030 HOH HOH . D 4 HOH A 31 1031 1031 HOH HOH . D 4 HOH A 32 1032 1032 HOH HOH . D 4 HOH A 33 1033 1033 HOH HOH . D 4 HOH A 34 1034 1034 HOH HOH . D 4 HOH A 35 1035 1035 HOH HOH . D 4 HOH A 36 1036 1036 HOH HOH . D 4 HOH A 37 1037 1037 HOH HOH . D 4 HOH A 38 1038 1038 HOH HOH . D 4 HOH A 39 1039 1039 HOH HOH . D 4 HOH A 40 1040 1040 HOH HOH . D 4 HOH A 41 1041 1041 HOH HOH . D 4 HOH A 42 1042 1042 HOH HOH . D 4 HOH A 43 1044 1044 HOH HOH . D 4 HOH A 44 1045 1045 HOH HOH . D 4 HOH A 45 1046 1046 HOH HOH . D 4 HOH A 46 1048 1048 HOH HOH . D 4 HOH A 47 1049 1049 HOH HOH . D 4 HOH A 48 1050 1050 HOH HOH . D 4 HOH A 49 1051 1051 HOH HOH . D 4 HOH A 50 1055 1055 HOH HOH . D 4 HOH A 51 1056 1056 HOH HOH . D 4 HOH A 52 1057 1057 HOH HOH . D 4 HOH A 53 1059 1059 HOH HOH . D 4 HOH A 54 1060 1060 HOH HOH . D 4 HOH A 55 1061 1061 HOH HOH . D 4 HOH A 56 1062 1062 HOH HOH . D 4 HOH A 57 1064 1064 HOH HOH . D 4 HOH A 58 1065 1065 HOH HOH . D 4 HOH A 59 1066 1066 HOH HOH . D 4 HOH A 60 1067 1067 HOH HOH . D 4 HOH A 61 1068 1068 HOH HOH . D 4 HOH A 62 1069 1069 HOH HOH . D 4 HOH A 63 1070 1070 HOH HOH . D 4 HOH A 64 1071 1071 HOH HOH . D 4 HOH A 65 1072 1072 HOH HOH . D 4 HOH A 66 1073 1073 HOH HOH . D 4 HOH A 67 1074 1074 HOH HOH . D 4 HOH A 68 1075 1075 HOH HOH . D 4 HOH A 69 1076 1076 HOH HOH . D 4 HOH A 70 1077 1077 HOH HOH . D 4 HOH A 71 1078 1078 HOH HOH . D 4 HOH A 72 1079 1079 HOH HOH . D 4 HOH A 73 1080 1080 HOH HOH . D 4 HOH A 74 1081 1081 HOH HOH . D 4 HOH A 75 1082 1082 HOH HOH . D 4 HOH A 76 1084 1084 HOH HOH . D 4 HOH A 77 1086 1086 HOH HOH . D 4 HOH A 78 1089 1089 HOH HOH . D 4 HOH A 79 1091 1091 HOH HOH . D 4 HOH A 80 1092 1092 HOH HOH . D 4 HOH A 81 1093 1093 HOH HOH . D 4 HOH A 82 1094 1094 HOH HOH . D 4 HOH A 83 1097 1097 HOH HOH . D 4 HOH A 84 1098 1098 HOH HOH . D 4 HOH A 85 1099 1099 HOH HOH . D 4 HOH A 86 1100 1100 HOH HOH . D 4 HOH A 87 1101 1101 HOH HOH . D 4 HOH A 88 1102 1102 HOH HOH . D 4 HOH A 89 1103 1103 HOH HOH . D 4 HOH A 90 1104 1104 HOH HOH . D 4 HOH A 91 1105 1105 HOH HOH . D 4 HOH A 92 1107 1107 HOH HOH . D 4 HOH A 93 1109 1109 HOH HOH . D 4 HOH A 94 1113 1113 HOH HOH . D 4 HOH A 95 1116 1116 HOH HOH . D 4 HOH A 96 1120 1120 HOH HOH . D 4 HOH A 97 1121 1121 HOH HOH . D 4 HOH A 98 1124 1124 HOH HOH . D 4 HOH A 99 1125 1125 HOH HOH . D 4 HOH A 100 1126 1126 HOH HOH . D 4 HOH A 101 1131 1131 HOH HOH . D 4 HOH A 102 1133 1133 HOH HOH . D 4 HOH A 103 1140 1140 HOH HOH . D 4 HOH A 104 1200 1200 HOH HOH . D 4 HOH A 105 1201 1201 HOH HOH . D 4 HOH A 106 1202 1202 HOH HOH . D 4 HOH A 107 1203 1203 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . C 3 60.098 43.842 12.507 1 36.67 ? N1 IMD 990 A 1 HETATM 2 C C2 IMD . . . C 3 59.128 43.089 13.081 1 36.79 ? C2 IMD 990 A 1 HETATM 3 N N3 IMD . . . C 3 58.73 43.552 14.304 1 36.31 ? N3 IMD 990 A 1 HETATM 4 C C4 IMD . . . C 3 59.495 44.698 14.558 1 36.94 ? C4 IMD 990 A 1 HETATM 5 C C5 IMD . . . C 3 60.333 44.879 13.459 1 36 ? C5 IMD 990 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 5 #