data_1L5Y # _model_server_result.job_id iCtwN0ujAGs4IWFjc7oAWA _model_server_result.datetime_utc '2024-12-26 22:10:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l5y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":672}' # _entry.id 1L5Y # _exptl.entry_id 1L5Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 66.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BERYLLIUM TRIFLUORIDE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L5Y _cell.length_a 52.005 _cell.length_b 76.837 _cell.length_c 77.853 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L5Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 S N N ? 4 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 11 A ASP 12 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? metalc ? metalc2 A OD1 ASP 54 A ASP 55 1_555 F BE BEF . A BEF 660 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? metalc ? metalc3 A OD2 ASP 54 A ASP 55 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc4 A O ARG 56 A ARG 57 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc5 F F1 BEF . A BEF 660 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc6 F BE BEF . A BEF 660 1_555 C MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.14 ? metalc ? metalc7 C MG MG . A MG 701 1_555 X O HOH . A HOH 709 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc8 C MG MG . A MG 701 1_555 X O HOH . A HOH 710 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc9 B OD1 ASP 11 B ASP 212 1_555 P MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc10 B OD1 ASP 54 B ASP 255 1_555 S BE BEF . B BEF 661 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? metalc ? metalc11 B OD2 ASP 54 B ASP 255 1_555 P MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? metalc ? metalc12 B O ARG 56 B ARG 257 1_555 P MG MG . B MG 702 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.225 ? metalc ? metalc13 B O ARG 56 B ARG 257 1_555 P MG MG . B MG 702 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc14 S F1 BEF . B BEF 661 1_555 P MG MG . B MG 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc15 P MG MG . B MG 702 1_555 Y O HOH . B HOH 743 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? metalc ? metalc16 P MG MG . B MG 702 1_555 Y O HOH . B HOH 744 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? # _chem_comp.formula 'Be F3 -1' _chem_comp.formula_weight 66.007 _chem_comp.id BEF _chem_comp.mon_nstd_flag . _chem_comp.name 'BERYLLIUM TRIFLUORIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag BE F1 BEF sing 70 n n BE F2 BEF sing 71 n n BE F3 BEF sing 72 n n # _atom_sites.entry_id 1L5Y _atom_sites.fract_transf_matrix[1][1] 0.019229 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012845 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 701 701 MG MG . D 3 SO4 A 1 706 706 SO4 SO4 . E 3 SO4 A 1 707 707 SO4 SO4 . F 4 BEF A 1 660 660 BEF BEF . G 5 BF2 A 1 662 662 BF2 BF2 . H 5 BF2 A 1 663 663 BF2 BF2 . I 5 BF2 A 1 664 664 BF2 BF2 . J 5 BF2 A 1 665 665 BF2 BF2 . K 5 BF2 A 1 667 667 BF2 BF2 . L 5 BF2 A 1 669 669 BF2 BF2 . M 5 BF2 A 1 670 670 BF2 BF2 . N 5 BF2 A 1 671 671 BF2 BF2 . O 6 BF4 A 1 673 673 BF4 BF4 . P 2 MG B 1 702 702 MG MG . Q 3 SO4 B 1 703 703 SO4 SO4 . R 3 SO4 B 1 704 704 SO4 SO4 . S 4 BEF B 1 661 661 BEF BEF . T 5 BF2 B 1 666 666 BF2 BF2 . U 5 BF2 B 1 668 668 BF2 BF2 . V 4 BEF B 1 672 672 BEF BEF . W 7 GOL B 1 674 674 GOL CRY . X 8 HOH A 1 708 1 HOH HOH . X 8 HOH A 2 709 2 HOH HOH . X 8 HOH A 3 710 3 HOH HOH . X 8 HOH A 4 711 4 HOH HOH . X 8 HOH A 5 712 6 HOH HOH . X 8 HOH A 6 713 7 HOH HOH . X 8 HOH A 7 714 9 HOH HOH . X 8 HOH A 8 715 10 HOH HOH . X 8 HOH A 9 716 14 HOH HOH . X 8 HOH A 10 717 15 HOH HOH . X 8 HOH A 11 718 17 HOH HOH . X 8 HOH A 12 719 18 HOH HOH . X 8 HOH A 13 720 22 HOH HOH . X 8 HOH A 14 721 23 HOH HOH . X 8 HOH A 15 722 26 HOH HOH . X 8 HOH A 16 723 27 HOH HOH . X 8 HOH A 17 724 29 HOH HOH . X 8 HOH A 18 725 30 HOH HOH . X 8 HOH A 19 726 32 HOH HOH . X 8 HOH A 20 727 37 HOH HOH . X 8 HOH A 21 728 42 HOH HOH . X 8 HOH A 22 729 43 HOH HOH . X 8 HOH A 23 730 54 HOH HOH . X 8 HOH A 24 731 57 HOH HOH . X 8 HOH A 25 732 60 HOH HOH . X 8 HOH A 26 733 61 HOH HOH . X 8 HOH A 27 734 63 HOH HOH . X 8 HOH A 28 735 64 HOH HOH . X 8 HOH A 29 736 65 HOH HOH . X 8 HOH A 30 737 67 HOH HOH . X 8 HOH A 31 738 68 HOH HOH . X 8 HOH A 32 739 69 HOH HOH . X 8 HOH A 33 740 70 HOH HOH . X 8 HOH A 34 741 71 HOH HOH . X 8 HOH A 35 742 73 HOH HOH . X 8 HOH A 36 743 74 HOH HOH . X 8 HOH A 37 744 77 HOH HOH . X 8 HOH A 38 745 78 HOH HOH . X 8 HOH A 39 746 82 HOH HOH . X 8 HOH A 40 747 83 HOH HOH . X 8 HOH A 41 748 84 HOH HOH . X 8 HOH A 42 749 86 HOH HOH . X 8 HOH A 43 750 88 HOH HOH . X 8 HOH A 44 751 89 HOH HOH . X 8 HOH A 45 752 91 HOH HOH . X 8 HOH A 46 753 92 HOH HOH . X 8 HOH A 47 754 94 HOH HOH . X 8 HOH A 48 755 97 HOH HOH . X 8 HOH A 49 756 99 HOH HOH . X 8 HOH A 50 757 101 HOH HOH . X 8 HOH A 51 758 102 HOH HOH . X 8 HOH A 52 759 103 HOH HOH . X 8 HOH A 53 760 108 HOH HOH . X 8 HOH A 54 761 111 HOH HOH . X 8 HOH A 55 762 114 HOH HOH . X 8 HOH A 56 763 115 HOH HOH . X 8 HOH A 57 764 116 HOH HOH . X 8 HOH A 58 765 118 HOH HOH . X 8 HOH A 59 766 119 HOH HOH . X 8 HOH A 60 767 120 HOH HOH . X 8 HOH A 61 768 122 HOH HOH . X 8 HOH A 62 769 125 HOH HOH . X 8 HOH A 63 770 127 HOH HOH . X 8 HOH A 64 771 128 HOH HOH . X 8 HOH A 65 772 133 HOH HOH . X 8 HOH A 66 773 134 HOH HOH . X 8 HOH A 67 774 135 HOH HOH . X 8 HOH A 68 775 137 HOH HOH . X 8 HOH A 69 776 138 HOH HOH . X 8 HOH A 70 777 139 HOH HOH . X 8 HOH A 71 778 140 HOH HOH . X 8 HOH A 72 779 141 HOH HOH . X 8 HOH A 73 780 142 HOH HOH . X 8 HOH A 74 781 143 HOH HOH . X 8 HOH A 75 782 144 HOH HOH . X 8 HOH A 76 783 146 HOH HOH . X 8 HOH A 77 784 147 HOH HOH . X 8 HOH A 78 785 148 HOH HOH . X 8 HOH A 79 786 150 HOH HOH . X 8 HOH A 80 787 154 HOH HOH . X 8 HOH A 81 788 155 HOH HOH . X 8 HOH A 82 789 156 HOH HOH . X 8 HOH A 83 790 157 HOH HOH . X 8 HOH A 84 791 158 HOH HOH . X 8 HOH A 85 792 159 HOH HOH . X 8 HOH A 86 793 161 HOH HOH . X 8 HOH A 87 794 162 HOH HOH . X 8 HOH A 88 795 164 HOH HOH . X 8 HOH A 89 796 165 HOH HOH . X 8 HOH A 90 797 167 HOH HOH . X 8 HOH A 91 798 168 HOH HOH . X 8 HOH A 92 799 170 HOH HOH . X 8 HOH A 93 800 171 HOH HOH . X 8 HOH A 94 801 173 HOH HOH . X 8 HOH A 95 802 174 HOH HOH . X 8 HOH A 96 803 176 HOH HOH . X 8 HOH A 97 804 180 HOH HOH . X 8 HOH A 98 805 183 HOH HOH . X 8 HOH A 99 806 184 HOH HOH . X 8 HOH A 100 807 187 HOH HOH . X 8 HOH A 101 808 189 HOH HOH . X 8 HOH A 102 809 190 HOH HOH . X 8 HOH A 103 810 191 HOH HOH . X 8 HOH A 104 811 192 HOH HOH . X 8 HOH A 105 812 195 HOH HOH . X 8 HOH A 106 813 197 HOH HOH . X 8 HOH A 107 814 200 HOH HOH . X 8 HOH A 108 815 202 HOH HOH . X 8 HOH A 109 816 204 HOH HOH . X 8 HOH A 110 817 205 HOH HOH . X 8 HOH A 111 818 209 HOH HOH . X 8 HOH A 112 819 210 HOH HOH . X 8 HOH A 113 820 211 HOH HOH . X 8 HOH A 114 821 214 HOH HOH . X 8 HOH A 115 822 215 HOH HOH . X 8 HOH A 116 823 218 HOH HOH . X 8 HOH A 117 824 219 HOH HOH . X 8 HOH A 118 825 221 HOH HOH . X 8 HOH A 119 826 224 HOH HOH . Y 8 HOH B 1 705 5 HOH HOH . Y 8 HOH B 2 706 8 HOH HOH . Y 8 HOH B 3 707 11 HOH HOH . Y 8 HOH B 4 708 12 HOH HOH . Y 8 HOH B 5 709 13 HOH HOH . Y 8 HOH B 6 710 16 HOH HOH . Y 8 HOH B 7 711 19 HOH HOH . Y 8 HOH B 8 712 20 HOH HOH . Y 8 HOH B 9 713 21 HOH HOH . Y 8 HOH B 10 714 24 HOH HOH . Y 8 HOH B 11 715 25 HOH HOH . Y 8 HOH B 12 716 28 HOH HOH . Y 8 HOH B 13 717 31 HOH HOH . Y 8 HOH B 14 718 33 HOH HOH . Y 8 HOH B 15 719 34 HOH HOH . Y 8 HOH B 16 720 35 HOH HOH . Y 8 HOH B 17 721 36 HOH HOH . Y 8 HOH B 18 722 38 HOH HOH . Y 8 HOH B 19 723 39 HOH HOH . Y 8 HOH B 20 724 40 HOH HOH . Y 8 HOH B 21 725 41 HOH HOH . Y 8 HOH B 22 726 44 HOH HOH . Y 8 HOH B 23 727 45 HOH HOH . Y 8 HOH B 24 728 46 HOH HOH . Y 8 HOH B 25 729 47 HOH HOH . Y 8 HOH B 26 730 48 HOH HOH . Y 8 HOH B 27 731 49 HOH HOH . Y 8 HOH B 28 732 50 HOH HOH . Y 8 HOH B 29 733 51 HOH HOH . Y 8 HOH B 30 734 52 HOH HOH . Y 8 HOH B 31 735 53 HOH HOH . Y 8 HOH B 32 736 55 HOH HOH . Y 8 HOH B 33 737 56 HOH HOH . Y 8 HOH B 34 738 58 HOH HOH . Y 8 HOH B 35 739 59 HOH HOH . Y 8 HOH B 36 740 62 HOH HOH . Y 8 HOH B 37 741 66 HOH HOH . Y 8 HOH B 38 742 72 HOH HOH . Y 8 HOH B 39 743 75 HOH HOH . Y 8 HOH B 40 744 76 HOH HOH . Y 8 HOH B 41 745 79 HOH HOH . Y 8 HOH B 42 746 80 HOH HOH . Y 8 HOH B 43 747 81 HOH HOH . Y 8 HOH B 44 748 85 HOH HOH . Y 8 HOH B 45 749 87 HOH HOH . Y 8 HOH B 46 750 90 HOH HOH . Y 8 HOH B 47 751 93 HOH HOH . Y 8 HOH B 48 752 95 HOH HOH . Y 8 HOH B 49 753 96 HOH HOH . Y 8 HOH B 50 754 98 HOH HOH . Y 8 HOH B 51 755 100 HOH HOH . Y 8 HOH B 52 756 104 HOH HOH . Y 8 HOH B 53 757 105 HOH HOH . Y 8 HOH B 54 758 106 HOH HOH . Y 8 HOH B 55 759 107 HOH HOH . Y 8 HOH B 56 760 109 HOH HOH . Y 8 HOH B 57 761 110 HOH HOH . Y 8 HOH B 58 762 112 HOH HOH . Y 8 HOH B 59 763 113 HOH HOH . Y 8 HOH B 60 764 117 HOH HOH . Y 8 HOH B 61 765 121 HOH HOH . Y 8 HOH B 62 766 123 HOH HOH . Y 8 HOH B 63 767 124 HOH HOH . Y 8 HOH B 64 768 126 HOH HOH . Y 8 HOH B 65 769 129 HOH HOH . Y 8 HOH B 66 770 130 HOH HOH . Y 8 HOH B 67 771 131 HOH HOH . Y 8 HOH B 68 772 132 HOH HOH . Y 8 HOH B 69 773 136 HOH HOH . Y 8 HOH B 70 774 145 HOH HOH . Y 8 HOH B 71 775 149 HOH HOH . Y 8 HOH B 72 776 151 HOH HOH . Y 8 HOH B 73 777 152 HOH HOH . Y 8 HOH B 74 778 153 HOH HOH . Y 8 HOH B 75 779 160 HOH HOH . Y 8 HOH B 76 780 163 HOH HOH . Y 8 HOH B 77 781 166 HOH HOH . Y 8 HOH B 78 782 169 HOH HOH . Y 8 HOH B 79 783 172 HOH HOH . Y 8 HOH B 80 784 175 HOH HOH . Y 8 HOH B 81 785 177 HOH HOH . Y 8 HOH B 82 786 178 HOH HOH . Y 8 HOH B 83 787 179 HOH HOH . Y 8 HOH B 84 788 181 HOH HOH . Y 8 HOH B 85 789 182 HOH HOH . Y 8 HOH B 86 790 185 HOH HOH . Y 8 HOH B 87 791 186 HOH HOH . Y 8 HOH B 88 792 188 HOH HOH . Y 8 HOH B 89 793 193 HOH HOH . Y 8 HOH B 90 794 194 HOH HOH . Y 8 HOH B 91 795 196 HOH HOH . Y 8 HOH B 92 796 198 HOH HOH . Y 8 HOH B 93 797 199 HOH HOH . Y 8 HOH B 94 798 201 HOH HOH . Y 8 HOH B 95 799 203 HOH HOH . Y 8 HOH B 96 800 206 HOH HOH . Y 8 HOH B 97 801 207 HOH HOH . Y 8 HOH B 98 802 208 HOH HOH . Y 8 HOH B 99 803 212 HOH HOH . Y 8 HOH B 100 804 213 HOH HOH . Y 8 HOH B 101 805 216 HOH HOH . Y 8 HOH B 102 806 217 HOH HOH . Y 8 HOH B 103 807 220 HOH HOH . Y 8 HOH B 104 808 222 HOH HOH . Y 8 HOH B 105 809 223 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 BE BE BEF . . . V 4 28.983 51.886 -11.575 1 31.39 ? BE BEF 672 B 1 HETATM 2 F F1 BEF . . . V 4 29.34 52.831 -12.653 1 27.69 ? F1 BEF 672 B 1 HETATM 3 F F2 BEF . . . V 4 28.155 52.617 -10.549 1 33.87 ? F2 BEF 672 B 1 HETATM 4 F F3 BEF . . . V 4 30.261 51.428 -10.955 1 35.73 ? F3 BEF 672 B 1 # _model_server_stats.io_time_ms 33 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #