data_1L6M
#
_model_server_result.job_id            0ky_7LuNesuzMGyR-tbXaA 
_model_server_result.datetime_utc      '2024-11-22 19:54:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l6m 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":403}' 
#
_entry.id    1L6M 
#
_exptl.entry_id    1L6M 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              241.197 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1L6M 
_cell.length_a            115.078 
_cell.length_b            115.078 
_cell.length_c            115.221 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L6M 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
? monomeric 1 author_defined_assembly 3 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,D,E,F,G,H,R 1 1 
B,I,J,K,L,S 2 1 
C,M,N,O,P,Q,T 3 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 H N N 
? 5 L N N 
? 5 Q N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 78 A CYS 76 1_555 A SG CYS 177 A CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? 
disulf ? disulf2 B SG CYS 78 B CYS 76 1_555 B SG CYS 177 B CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 C SG CYS 78 C CYS 76 1_555 C SG CYS 177 C CYS 175 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
covale ? covale1 J O6 DBH . B DBH 301 1_555 K O3 DBH . B DBH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? 
metalc ? metalc1 D FE FE . A FE 200 1_555 F O3 DBH . A DBH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? 
metalc ? metalc2 D FE FE . A FE 200 1_555 F O6 DBH . A DBH 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc3 D FE FE . A FE 200 1_555 G O3 DBH . A DBH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.889 ? 
metalc ? metalc4 D FE FE . A FE 200 1_555 G O6 DBH . A DBH 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc5 D FE FE . A FE 200 1_555 H O1 DBS . A DBS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc6 D FE FE . A FE 200 1_555 H O4 DBS . A DBS 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc7 I FE FE . B FE 300 1_555 J O3 DBH . B DBH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.884 ? 
metalc ? metalc8 I FE FE . B FE 300 1_555 J O6 DBH . B DBH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc9 I FE FE . B FE 300 1_555 K O3 DBH . B DBH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? 
metalc ? metalc10 I FE FE . B FE 300 1_555 K O6 DBH . B DBH 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc11 I FE FE . B FE 300 1_555 L O1 DBS . B DBS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? 
metalc ? metalc12 I FE FE . B FE 300 1_555 L O4 DBS . B DBS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? 
metalc ? metalc13 M FE FE . C FE 400 1_555 P O3 DBH . C DBH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc14 M FE FE . C FE 400 1_555 P O6 DBH . C DBH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc15 M FE FE . C FE 400 1_555 Q O1 DBS . C DBS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc16 M FE FE . C FE 400 1_555 Q O4 DBS . C DBS 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
#
_chem_comp.formula           'C10 H11 N O6' 
_chem_comp.formula_weight    241.197 
_chem_comp.id                DBS 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              '2-(2,3-DIHYDROXY-BENZOYLAMINO)-3-HYDROXY-PROPIONIC ACID' 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     2,3,-DIHYDROXYBENZOYLSERINE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O4 C4 DBS sing 100 n n 
O4 HO4 DBS sing 101 n n 
C4 C7 DBS doub 102 n y 
C4 C1 DBS sing 103 n y 
C7 C10 DBS sing 104 n y 
C7 HC7 DBS sing 105 n n 
C1 O1 DBS sing 106 n n 
C1 C16 DBS doub 107 n y 
O1 HO1 DBS sing 108 n n 
C16 C13 DBS sing 109 n y 
C16 C19 DBS sing 110 n n 
C13 C10 DBS doub 111 n y 
C13 HC13 DBS sing 112 n n 
C10 HC10 DBS sing 113 n n 
C19 O7 DBS doub 114 n n 
C19 N1 DBS sing 115 n n 
N1 C22 DBS sing 116 n n 
N1 HN1 DBS sing 117 n n 
C22 C28 DBS sing 118 n n 
C22 C25 DBS sing 119 n n 
C22 HC22 DBS sing 120 n n 
C28 O13 DBS sing 121 n n 
C28 H281 DBS sing 122 n n 
C28 H282 DBS sing 123 n n 
O13 HO13 DBS sing 124 n n 
C25 O10 DBS doub 125 n n 
C25 O15 DBS sing 126 n n 
O15 HO15 DBS sing 127 n n 
#
_atom_sites.entry_id                     1L6M 
_atom_sites.fract_transf_matrix[1][1]    0.00869 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00869 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008679 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 FE A 1 200 200 FE FE . 
E 3 SO4 A 1 230 230 SO4 SO4 . 
F 4 DBH A 1 201 201 DBH DBH . 
G 4 DBH A 1 202 202 DBH DBH . 
H 5 DBS A 1 203 203 DBS DBS . 
I 2 FE B 1 300 300 FE FE . 
J 4 DBH B 1 301 301 DBH DBH . 
K 4 DBH B 1 302 302 DBH DBH . 
L 5 DBS B 1 303 303 DBS DBS . 
M 2 FE C 1 400 400 FE FE . 
N 3 SO4 C 1 330 330 SO4 SO4 . 
O 3 SO4 C 1 430 430 SO4 SO4 . 
P 4 DBH C 1 401 401 DBH DBH . 
Q 5 DBS C 1 403 403 DBS DBS . 
R 6 HOH A 1 501 501 HOH HOH . 
R 6 HOH A 2 506 506 HOH HOH . 
R 6 HOH A 3 507 507 HOH HOH . 
R 6 HOH A 4 513 513 HOH HOH . 
R 6 HOH A 5 519 519 HOH HOH . 
R 6 HOH A 6 521 521 HOH HOH . 
R 6 HOH A 7 523 523 HOH HOH . 
R 6 HOH A 8 524 524 HOH HOH . 
R 6 HOH A 9 525 525 HOH HOH . 
R 6 HOH A 10 527 527 HOH HOH . 
R 6 HOH A 11 528 528 HOH HOH . 
R 6 HOH A 12 529 529 HOH HOH . 
R 6 HOH A 13 536 536 HOH HOH . 
R 6 HOH A 14 538 538 HOH HOH . 
R 6 HOH A 15 539 539 HOH HOH . 
R 6 HOH A 16 540 540 HOH HOH . 
R 6 HOH A 17 542 542 HOH HOH . 
R 6 HOH A 18 546 546 HOH HOH . 
R 6 HOH A 19 550 550 HOH HOH . 
R 6 HOH A 20 552 552 HOH HOH . 
R 6 HOH A 21 554 554 HOH HOH . 
R 6 HOH A 22 555 555 HOH HOH . 
R 6 HOH A 23 557 557 HOH HOH . 
R 6 HOH A 24 560 560 HOH HOH . 
R 6 HOH A 25 562 562 HOH HOH . 
R 6 HOH A 26 565 565 HOH HOH . 
S 6 HOH B 1 509 509 HOH HOH . 
S 6 HOH B 2 531 531 HOH HOH . 
S 6 HOH B 3 537 537 HOH HOH . 
S 6 HOH B 4 541 541 HOH HOH . 
S 6 HOH B 5 549 549 HOH HOH . 
S 6 HOH B 6 558 558 HOH HOH . 
S 6 HOH B 7 559 559 HOH HOH . 
S 6 HOH B 8 561 561 HOH HOH . 
T 6 HOH C 1 502 502 HOH HOH . 
T 6 HOH C 2 503 503 HOH HOH . 
T 6 HOH C 3 504 504 HOH HOH . 
T 6 HOH C 4 505 505 HOH HOH . 
T 6 HOH C 5 511 511 HOH HOH . 
T 6 HOH C 6 512 512 HOH HOH . 
T 6 HOH C 7 514 514 HOH HOH . 
T 6 HOH C 8 515 515 HOH HOH . 
T 6 HOH C 9 516 516 HOH HOH . 
T 6 HOH C 10 517 517 HOH HOH . 
T 6 HOH C 11 518 518 HOH HOH . 
T 6 HOH C 12 520 520 HOH HOH . 
T 6 HOH C 13 522 522 HOH HOH . 
T 6 HOH C 14 530 530 HOH HOH . 
T 6 HOH C 15 532 532 HOH HOH . 
T 6 HOH C 16 533 533 HOH HOH . 
T 6 HOH C 17 534 534 HOH HOH . 
T 6 HOH C 18 535 535 HOH HOH . 
T 6 HOH C 19 544 544 HOH HOH . 
T 6 HOH C 20 545 545 HOH HOH . 
T 6 HOH C 21 548 548 HOH HOH . 
T 6 HOH C 22 551 551 HOH HOH . 
T 6 HOH C 23 556 556 HOH HOH . 
T 6 HOH C 24 566 566 HOH HOH . 
T 6 HOH C 25 567 567 HOH HOH . 
T 6 HOH C 26 568 568 HOH HOH . 
T 6 HOH C 27 569 569 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O4 DBS . . . Q 5 49.06 39.615 42.61 1 56.44 ? O4 DBS 403 C 1 
HETATM 2 C C4 DBS . . . Q 5 50.328 40.065 42.49 1 56.29 ? C4 DBS 403 C 1 
HETATM 3 C C7 DBS . . . Q 5 51.003 41.05 43.281 1 55.62 ? C7 DBS 403 C 1 
HETATM 4 C C1 DBS . . . Q 5 51.063 39.4 41.407 1 58.14 ? C1 DBS 403 C 1 
HETATM 5 O O1 DBS . . . Q 5 50.384 38.458 40.677 1 58.89 ? O1 DBS 403 C 1 
HETATM 6 C C16 DBS . . . Q 5 52.45 39.803 41.177 1 58.92 ? C16 DBS 403 C 1 
HETATM 7 C C13 DBS . . . Q 5 53.087 40.807 42.019 1 56.32 ? C13 DBS 403 C 1 
HETATM 8 C C10 DBS . . . Q 5 52.36 41.414 43.039 1 54.85 ? C10 DBS 403 C 1 
HETATM 9 C C19 DBS . . . Q 5 53.286 39.107 40.179 1 61.06 ? C19 DBS 403 C 1 
HETATM 10 O O7 DBS . . . Q 5 54.445 39.415 40.039 1 58.64 ? O7 DBS 403 C 1 
HETATM 11 N N1 DBS . . . Q 5 52.737 38.087 39.484 1 65.94 ? N1 DBS 403 C 1 
HETATM 12 C C22 DBS . . . Q 5 53.645 37.298 38.686 1 69.54 ? C22 DBS 403 C 1 
HETATM 13 C C28 DBS . . . Q 5 53.762 35.984 39.462 1 69.67 ? C28 DBS 403 C 1 
HETATM 14 O O13 DBS . . . Q 5 55.07 35.743 40.034 1 69.55 ? O13 DBS 403 C 1 
HETATM 15 C C25 DBS . . . Q 5 53.332 37.12 37.243 1 72.34 ? C25 DBS 403 C 1 
HETATM 16 O O10 DBS . . . Q 5 53.51 36.027 36.722 1 75.1 ? O10 DBS 403 C 1 
HETATM 17 O O15 DBS . . . Q 5 52.961 38.269 36.602 1 73.54 ? O15 DBS 403 C 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           17 
#