data_1L7Z # _model_server_result.job_id Ml7PwR8nYt6ehOumaDpXWA _model_server_result.datetime_utc '2025-03-06 08:16:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l7z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":302}' # _entry.id 1L7Z # _exptl.entry_id 1L7Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1L7Z _cell.length_a 40.6 _cell.length_b 40.6 _cell.length_c 173.639 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L7Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 G C1 MYR . B MYR 200 1_555 B N GLY 1 B GLY 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD1 ASP 20 A ASP 20 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? metalc ? metalc2 A OD1 ASP 22 A ASP 22 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.43 ? metalc ? metalc3 A OD2 ASP 22 A ASP 22 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.259 ? metalc ? metalc4 A OD1 ASP 24 A ASP 24 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc5 A O THR 26 A THR 26 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc6 A OE2 GLU 31 A GLU 31 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.541 ? metalc ? metalc7 A OE1 GLU 31 A GLU 31 1_555 C CA CA . A CA 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc8 A OD1 ASP 56 A ASP 56 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc9 A OD1 ASP 58 A ASP 58 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc10 A OD1 ASN 60 A ASN 60 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc11 A O THR 62 A THR 62 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc12 A OE1 GLU 67 A GLU 67 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc13 A OE2 GLU 67 A GLU 67 1_555 D CA CA . A CA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc14 A OD1 ASP 93 A ASP 93 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? metalc ? metalc15 A OD2 ASP 95 A ASP 95 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.076 ? metalc ? metalc16 A OD1 ASP 95 A ASP 95 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc17 A OD1 ASN 97 A ASN 97 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? metalc ? metalc18 A O TYR 99 A TYR 99 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc19 A OE1 GLU 104 A GLU 104 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc20 A OE2 GLU 104 A GLU 104 1_555 F CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc21 A OD1 ASP 129 A ASP 129 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc22 A OD1 ASP 131 A ASP 131 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc23 A OD2 ASP 131 A ASP 131 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.384 ? metalc ? metalc24 A OD1 ASP 133 A ASP 133 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc25 A OD2 ASP 133 A ASP 133 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.372 ? metalc ? metalc26 A O GLN 135 A GLN 135 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc27 A OE1 GLU 140 A GLU 140 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.515 ? metalc ? metalc28 A OE2 GLU 140 A GLU 140 1_555 E CA CA . A CA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc29 D CA CA . A CA 301 1_555 H O HOH . A HOH 1027 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc30 D CA CA . A CA 301 1_555 H O HOH . A HOH 1052 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.382 ? metalc ? metalc31 E CA CA . A CA 302 1_555 H O HOH . A HOH 1014 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc32 F CA CA . A CA 303 1_555 H O HOH . A HOH 1015 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1L7Z _atom_sites.fract_transf_matrix[1][1] 0.024631 _atom_sites.fract_transf_matrix[1][2] 0.01422 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028441 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005759 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 300 300 CA CA . D 3 CA A 1 301 301 CA CA . E 3 CA A 1 302 302 CA CA . F 3 CA A 1 303 303 CA CA . G 4 MYR B 1 200 200 MYR MYR . H 5 HOH A 1 1000 1000 HOH HOH . H 5 HOH A 2 1001 1001 HOH HOH . H 5 HOH A 3 1003 1003 HOH HOH . H 5 HOH A 4 1004 1004 HOH HOH . H 5 HOH A 5 1005 1005 HOH HOH . H 5 HOH A 6 1006 1006 HOH HOH . H 5 HOH A 7 1007 1007 HOH HOH . H 5 HOH A 8 1008 1008 HOH HOH . H 5 HOH A 9 1009 1009 HOH HOH . H 5 HOH A 10 1010 1010 HOH HOH . H 5 HOH A 11 1011 1011 HOH HOH . H 5 HOH A 12 1012 1012 HOH HOH . H 5 HOH A 13 1014 1014 HOH HOH . H 5 HOH A 14 1015 1015 HOH HOH . H 5 HOH A 15 1016 1016 HOH HOH . H 5 HOH A 16 1017 1017 HOH HOH . H 5 HOH A 17 1018 1018 HOH HOH . H 5 HOH A 18 1019 1019 HOH HOH . H 5 HOH A 19 1020 1020 HOH HOH . H 5 HOH A 20 1021 1021 HOH HOH . H 5 HOH A 21 1022 1022 HOH HOH . H 5 HOH A 22 1023 1023 HOH HOH . H 5 HOH A 23 1024 1024 HOH HOH . H 5 HOH A 24 1025 1025 HOH HOH . H 5 HOH A 25 1026 1026 HOH HOH . H 5 HOH A 26 1027 1027 HOH HOH . H 5 HOH A 27 1028 1028 HOH HOH . H 5 HOH A 28 1029 1029 HOH HOH . H 5 HOH A 29 1030 1030 HOH HOH . H 5 HOH A 30 1031 1031 HOH HOH . H 5 HOH A 31 1032 1032 HOH HOH . H 5 HOH A 32 1033 1033 HOH HOH . H 5 HOH A 33 1034 1034 HOH HOH . H 5 HOH A 34 1036 1036 HOH HOH . H 5 HOH A 35 1037 1037 HOH HOH . H 5 HOH A 36 1038 1038 HOH HOH . H 5 HOH A 37 1039 1039 HOH HOH . H 5 HOH A 38 1040 1040 HOH HOH . H 5 HOH A 39 1041 1041 HOH HOH . H 5 HOH A 40 1042 1042 HOH HOH . H 5 HOH A 41 1043 1043 HOH HOH . H 5 HOH A 42 1044 1044 HOH HOH . H 5 HOH A 43 1045 1045 HOH HOH . H 5 HOH A 44 1046 1046 HOH HOH . H 5 HOH A 45 1047 1047 HOH HOH . H 5 HOH A 46 1048 1048 HOH HOH . H 5 HOH A 47 1049 1049 HOH HOH . H 5 HOH A 48 1050 1050 HOH HOH . H 5 HOH A 49 1051 1051 HOH HOH . H 5 HOH A 50 1052 1052 HOH HOH . H 5 HOH A 51 1053 1053 HOH HOH . H 5 HOH A 52 1054 1054 HOH HOH . H 5 HOH A 53 1055 1055 HOH HOH . H 5 HOH A 54 1056 1056 HOH HOH . H 5 HOH A 55 1057 1057 HOH HOH . H 5 HOH A 56 1058 1058 HOH HOH . H 5 HOH A 57 1059 1059 HOH HOH . H 5 HOH A 58 1060 1060 HOH HOH . H 5 HOH A 59 1061 1061 HOH HOH . H 5 HOH A 60 1062 1062 HOH HOH . H 5 HOH A 61 1063 1063 HOH HOH . H 5 HOH A 62 1064 1064 HOH HOH . H 5 HOH A 63 1065 1065 HOH HOH . H 5 HOH A 64 1066 1066 HOH HOH . H 5 HOH A 65 1067 1067 HOH HOH . H 5 HOH A 66 1068 1068 HOH HOH . H 5 HOH A 67 1069 1069 HOH HOH . H 5 HOH A 68 1070 1070 HOH HOH . H 5 HOH A 69 1071 1071 HOH HOH . H 5 HOH A 70 1072 1072 HOH HOH . H 5 HOH A 71 1073 1073 HOH HOH . H 5 HOH A 72 1074 1074 HOH HOH . H 5 HOH A 73 1075 1075 HOH HOH . H 5 HOH A 74 1076 1076 HOH HOH . I 5 HOH B 1 1035 1035 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.475 _atom_site.Cartn_y 20.133 _atom_site.Cartn_z 63.667 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.3 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 302 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #