data_1L8B
#
_model_server_result.job_id            NPB02k-UoGK3RBYnjN2Vxg 
_model_server_result.datetime_utc      '2024-10-19 10:17:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l8b 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":1000}' 
#
_entry.id    1L8B 
#
_exptl.entry_id    1L8B 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              538.215 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1L8B 
_cell.length_a            70.12 
_cell.length_b            75.92 
_cell.length_c            77.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L8B 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C11 H19 N5 O14 P3 1' 
_chem_comp.formula_weight    538.215 
_chem_comp.id                MGP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "7-METHYL-GUANOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A MGP sing 237 n n 
PA O2A MGP doub 238 n n 
PA O3A MGP sing 239 n n 
PA O5' MGP sing 240 n n 
O3A PB MGP sing 241 n n 
O5' C5' MGP sing 242 n n 
PB O1B MGP sing 243 n n 
PB O2B MGP doub 244 n n 
PB O3B MGP sing 245 n n 
O3B PC MGP sing 246 n n 
PC O1C MGP sing 247 n n 
PC O2C MGP doub 248 n n 
PC O3C MGP sing 249 n n 
C5' C4' MGP sing 250 n n 
C5' H5' MGP sing 251 n n 
C5' "H5'A" MGP sing 252 n n 
C4' O4' MGP sing 253 n n 
C4' C3' MGP sing 254 n n 
C4' H4' MGP sing 255 n n 
O4' C1' MGP sing 256 n n 
C3' O3' MGP sing 257 n n 
C3' C2' MGP sing 258 n n 
C3' H3' MGP sing 259 n n 
O3' HO3' MGP sing 260 n n 
C2' O2' MGP sing 261 n n 
C2' C1' MGP sing 262 n n 
C2' H2' MGP sing 263 n n 
O2' HO2' MGP sing 264 n n 
C1' N9 MGP sing 265 n n 
C1' H1' MGP sing 266 n n 
N9 C8 MGP sing 267 n y 
N9 C4 MGP sing 268 n y 
C8 N7 MGP doub 269 n y 
C8 H8 MGP sing 270 n n 
N7 CM7 MGP sing 271 n n 
N7 C5 MGP sing 272 n y 
CM7 HM7 MGP sing 273 n n 
CM7 HM7A MGP sing 274 n n 
CM7 HM7B MGP sing 275 n n 
C5 C6 MGP sing 276 n n 
C5 C4 MGP doub 277 n y 
C6 O6 MGP doub 278 n n 
C6 N1 MGP sing 279 n n 
N1 C2 MGP sing 280 n n 
N1 HN1 MGP sing 281 n n 
C2 N2 MGP sing 282 n n 
C2 N3 MGP doub 283 n n 
N2 HN2 MGP sing 284 n n 
N2 HN2A MGP sing 285 n n 
N3 C4 MGP sing 286 n n 
O1A H16 MGP sing 287 n n 
O1B H17 MGP sing 288 n n 
O1C H18 MGP sing 289 n n 
O3C H19 MGP sing 290 n n 
#
_atom_sites.entry_id                     1L8B 
_atom_sites.fract_transf_matrix[1][1]    0.014261 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013172 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012847 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MGP A 1 1000 1000 MGP CAP . 
D 2 MGP B 1 2000 2000 MGP CAP . 
E 3 HOH A 1 1001 1 HOH TIP . 
E 3 HOH A 2 1002 3 HOH TIP . 
E 3 HOH A 3 1003 4 HOH TIP . 
E 3 HOH A 4 1004 10 HOH TIP . 
E 3 HOH A 5 1005 11 HOH TIP . 
E 3 HOH A 6 1006 12 HOH TIP . 
E 3 HOH A 7 1007 13 HOH TIP . 
E 3 HOH A 8 1008 14 HOH TIP . 
E 3 HOH A 9 1009 15 HOH TIP . 
E 3 HOH A 10 1010 17 HOH TIP . 
E 3 HOH A 11 1011 18 HOH TIP . 
E 3 HOH A 12 1012 19 HOH TIP . 
E 3 HOH A 13 1013 21 HOH TIP . 
E 3 HOH A 14 1014 22 HOH TIP . 
E 3 HOH A 15 1015 23 HOH TIP . 
E 3 HOH A 16 1016 24 HOH TIP . 
E 3 HOH A 17 1017 26 HOH TIP . 
E 3 HOH A 18 1018 28 HOH TIP . 
E 3 HOH A 19 1019 32 HOH TIP . 
E 3 HOH A 20 1020 33 HOH TIP . 
E 3 HOH A 21 1021 36 HOH TIP . 
E 3 HOH A 22 1022 37 HOH TIP . 
E 3 HOH A 23 1023 46 HOH TIP . 
E 3 HOH A 24 1024 51 HOH TIP . 
E 3 HOH A 25 1025 53 HOH TIP . 
E 3 HOH A 26 1026 54 HOH TIP . 
E 3 HOH A 27 1027 55 HOH TIP . 
E 3 HOH A 28 1028 56 HOH TIP . 
E 3 HOH A 29 1029 57 HOH TIP . 
E 3 HOH A 30 1030 58 HOH TIP . 
E 3 HOH A 31 1031 59 HOH TIP . 
E 3 HOH A 32 1032 61 HOH TIP . 
E 3 HOH A 33 1033 65 HOH TIP . 
E 3 HOH A 34 1034 68 HOH TIP . 
E 3 HOH A 35 1035 69 HOH TIP . 
E 3 HOH A 36 1036 70 HOH TIP . 
E 3 HOH A 37 1037 73 HOH TIP . 
E 3 HOH A 38 1038 74 HOH TIP . 
E 3 HOH A 39 1039 77 HOH TIP . 
E 3 HOH A 40 1040 80 HOH TIP . 
E 3 HOH A 41 1041 83 HOH TIP . 
E 3 HOH A 42 1042 85 HOH TIP . 
E 3 HOH A 43 1043 86 HOH TIP . 
E 3 HOH A 44 1044 90 HOH TIP . 
E 3 HOH A 45 1045 91 HOH TIP . 
E 3 HOH A 46 1046 92 HOH TIP . 
E 3 HOH A 47 1047 93 HOH TIP . 
E 3 HOH A 48 1048 94 HOH TIP . 
E 3 HOH A 49 1049 98 HOH TIP . 
E 3 HOH A 50 1050 101 HOH TIP . 
E 3 HOH A 51 1051 105 HOH TIP . 
E 3 HOH A 52 1052 106 HOH TIP . 
E 3 HOH A 53 1053 108 HOH TIP . 
E 3 HOH A 54 1054 109 HOH TIP . 
E 3 HOH A 55 1055 111 HOH TIP . 
E 3 HOH A 56 1056 114 HOH TIP . 
E 3 HOH A 57 1057 115 HOH TIP . 
E 3 HOH A 58 1058 120 HOH TIP . 
E 3 HOH A 59 1059 123 HOH TIP . 
E 3 HOH A 60 1060 125 HOH TIP . 
E 3 HOH A 61 1061 126 HOH TIP . 
E 3 HOH A 62 1062 128 HOH TIP . 
E 3 HOH A 63 1063 129 HOH TIP . 
E 3 HOH A 64 1064 132 HOH TIP . 
E 3 HOH A 65 1065 133 HOH TIP . 
E 3 HOH A 66 1066 135 HOH TIP . 
E 3 HOH A 67 1067 136 HOH TIP . 
E 3 HOH A 68 1068 137 HOH TIP . 
E 3 HOH A 69 1069 139 HOH TIP . 
E 3 HOH A 70 1070 140 HOH TIP . 
E 3 HOH A 71 1071 144 HOH TIP . 
E 3 HOH A 72 1072 146 HOH TIP . 
E 3 HOH A 73 1073 150 HOH TIP . 
E 3 HOH A 74 1074 157 HOH TIP . 
E 3 HOH A 75 1075 159 HOH TIP . 
E 3 HOH A 76 1076 161 HOH TIP . 
E 3 HOH A 77 1077 165 HOH TIP . 
E 3 HOH A 78 1078 167 HOH TIP . 
E 3 HOH A 79 1079 168 HOH TIP . 
E 3 HOH A 80 1080 171 HOH TIP . 
E 3 HOH A 81 1081 172 HOH TIP . 
E 3 HOH A 82 1082 176 HOH TIP . 
E 3 HOH A 83 1083 177 HOH TIP . 
E 3 HOH A 84 1084 181 HOH TIP . 
E 3 HOH A 85 1085 183 HOH TIP . 
E 3 HOH A 86 1086 185 HOH TIP . 
E 3 HOH A 87 1087 186 HOH TIP . 
E 3 HOH A 88 1088 187 HOH TIP . 
E 3 HOH A 89 1089 188 HOH TIP . 
E 3 HOH A 90 1090 190 HOH TIP . 
E 3 HOH A 91 1091 192 HOH TIP . 
E 3 HOH A 92 1092 193 HOH TIP . 
E 3 HOH A 93 1093 195 HOH TIP . 
E 3 HOH A 94 1094 198 HOH TIP . 
E 3 HOH A 95 1095 199 HOH TIP . 
E 3 HOH A 96 1096 200 HOH TIP . 
F 3 HOH B 1 2001 2 HOH TIP . 
F 3 HOH B 2 2002 5 HOH TIP . 
F 3 HOH B 3 2003 6 HOH TIP . 
F 3 HOH B 4 2004 7 HOH TIP . 
F 3 HOH B 5 2005 8 HOH TIP . 
F 3 HOH B 6 2006 9 HOH TIP . 
F 3 HOH B 7 2007 16 HOH TIP . 
F 3 HOH B 8 2008 20 HOH TIP . 
F 3 HOH B 9 2009 25 HOH TIP . 
F 3 HOH B 10 2010 27 HOH TIP . 
F 3 HOH B 11 2011 29 HOH TIP . 
F 3 HOH B 12 2012 30 HOH TIP . 
F 3 HOH B 13 2013 31 HOH TIP . 
F 3 HOH B 14 2014 34 HOH TIP . 
F 3 HOH B 15 2015 35 HOH TIP . 
F 3 HOH B 16 2016 38 HOH TIP . 
F 3 HOH B 17 2017 39 HOH TIP . 
F 3 HOH B 18 2018 40 HOH TIP . 
F 3 HOH B 19 2019 41 HOH TIP . 
F 3 HOH B 20 2020 42 HOH TIP . 
F 3 HOH B 21 2021 43 HOH TIP . 
F 3 HOH B 22 2022 44 HOH TIP . 
F 3 HOH B 23 2023 45 HOH TIP . 
F 3 HOH B 24 2024 47 HOH TIP . 
F 3 HOH B 25 2025 48 HOH TIP . 
F 3 HOH B 26 2026 49 HOH TIP . 
F 3 HOH B 27 2027 50 HOH TIP . 
F 3 HOH B 28 2028 52 HOH TIP . 
F 3 HOH B 29 2029 60 HOH TIP . 
F 3 HOH B 30 2030 62 HOH TIP . 
F 3 HOH B 31 2031 63 HOH TIP . 
F 3 HOH B 32 2032 64 HOH TIP . 
F 3 HOH B 33 2033 66 HOH TIP . 
F 3 HOH B 34 2034 67 HOH TIP . 
F 3 HOH B 35 2035 71 HOH TIP . 
F 3 HOH B 36 2036 72 HOH TIP . 
F 3 HOH B 37 2037 75 HOH TIP . 
F 3 HOH B 38 2038 76 HOH TIP . 
F 3 HOH B 39 2039 78 HOH TIP . 
F 3 HOH B 40 2040 79 HOH TIP . 
F 3 HOH B 41 2041 81 HOH TIP . 
F 3 HOH B 42 2042 82 HOH TIP . 
F 3 HOH B 43 2043 84 HOH TIP . 
F 3 HOH B 44 2044 87 HOH TIP . 
F 3 HOH B 45 2045 88 HOH TIP . 
F 3 HOH B 46 2046 89 HOH TIP . 
F 3 HOH B 47 2047 95 HOH TIP . 
F 3 HOH B 48 2048 97 HOH TIP . 
F 3 HOH B 49 2049 99 HOH TIP . 
F 3 HOH B 50 2050 102 HOH TIP . 
F 3 HOH B 51 2051 103 HOH TIP . 
F 3 HOH B 52 2052 104 HOH TIP . 
F 3 HOH B 53 2053 107 HOH TIP . 
F 3 HOH B 54 2054 110 HOH TIP . 
F 3 HOH B 55 2055 113 HOH TIP . 
F 3 HOH B 56 2056 116 HOH TIP . 
F 3 HOH B 57 2057 117 HOH TIP . 
F 3 HOH B 58 2058 118 HOH TIP . 
F 3 HOH B 59 2059 119 HOH TIP . 
F 3 HOH B 60 2060 121 HOH TIP . 
F 3 HOH B 61 2061 122 HOH TIP . 
F 3 HOH B 62 2062 127 HOH TIP . 
F 3 HOH B 63 2063 130 HOH TIP . 
F 3 HOH B 64 2064 131 HOH TIP . 
F 3 HOH B 65 2065 134 HOH TIP . 
F 3 HOH B 66 2066 138 HOH TIP . 
F 3 HOH B 67 2067 141 HOH TIP . 
F 3 HOH B 68 2068 142 HOH TIP . 
F 3 HOH B 69 2069 143 HOH TIP . 
F 3 HOH B 70 2070 147 HOH TIP . 
F 3 HOH B 71 2071 148 HOH TIP . 
F 3 HOH B 72 2072 149 HOH TIP . 
F 3 HOH B 73 2073 151 HOH TIP . 
F 3 HOH B 74 2074 153 HOH TIP . 
F 3 HOH B 75 2075 154 HOH TIP . 
F 3 HOH B 76 2076 155 HOH TIP . 
F 3 HOH B 77 2077 158 HOH TIP . 
F 3 HOH B 78 2078 160 HOH TIP . 
F 3 HOH B 79 2079 163 HOH TIP . 
F 3 HOH B 80 2080 164 HOH TIP . 
F 3 HOH B 81 2081 166 HOH TIP . 
F 3 HOH B 82 2082 173 HOH TIP . 
F 3 HOH B 83 2083 174 HOH TIP . 
F 3 HOH B 84 2084 175 HOH TIP . 
F 3 HOH B 85 2085 178 HOH TIP . 
F 3 HOH B 86 2086 180 HOH TIP . 
F 3 HOH B 87 2087 184 HOH TIP . 
F 3 HOH B 88 2088 194 HOH TIP . 
F 3 HOH B 89 2089 196 HOH TIP . 
F 3 HOH B 90 2090 197 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA MGP . . . C 2 4.338 11.616 14.537 1 27.96 ? PA MGP 1000 A 1 
HETATM 2 O O1A MGP . . . C 2 4.879 11.565 13.143 1 28.08 ? O1A MGP 1000 A 1 
HETATM 3 O O2A MGP . . . C 2 4.652 10.314 15.173 1 27.41 ? O2A MGP 1000 A 1 
HETATM 4 O O3A MGP . . . C 2 5.072 12.8 15.376 1 29.56 ? O3A MGP 1000 A 1 
HETATM 5 O O5' MGP . . . C 2 2.694 11.804 14.517 1 27.31 ? O5' MGP 1000 A 1 
HETATM 6 P PB MGP . . . C 2 4.792 14.382 15.251 1 29.82 ? PB MGP 1000 A 1 
HETATM 7 O O1B MGP . . . C 2 5.042 14.882 13.876 1 30.52 ? O1B MGP 1000 A 1 
HETATM 8 O O2B MGP . . . C 2 5.722 15.048 16.189 1 30.57 ? O2B MGP 1000 A 1 
HETATM 9 O O3B MGP . . . C 2 3.403 14.691 15.641 1 35.08 ? O3B MGP 1000 A 1 
HETATM 10 P PC MGP . . . C 2 2.434 15.07 16.858 1 40.09 ? PC MGP 1000 A 1 
HETATM 11 O O1C MGP . . . C 2 1.064 14.617 16.42 1 41.81 ? O1C MGP 1000 A 1 
HETATM 12 O O2C MGP . . . C 2 2.46 16.519 17.182 1 40.41 ? O2C MGP 1000 A 1 
HETATM 13 O O3C MGP . . . C 2 2.958 14.241 17.979 1 39.55 ? O3C MGP 1000 A 1 
HETATM 14 C C5' MGP . . . C 2 1.991 12.498 13.496 1 25.41 ? C5' MGP 1000 A 1 
HETATM 15 C C4' MGP . . . C 2 0.78 11.808 12.932 1 24.3 ? C4' MGP 1000 A 1 
HETATM 16 O O4' MGP . . . C 2 1.229 10.691 12.08 1 21.09 ? O4' MGP 1000 A 1 
HETATM 17 C C3' MGP . . . C 2 -0.114 11.08 13.9 1 25.22 ? C3' MGP 1000 A 1 
HETATM 18 O O3' MGP . . . C 2 -1.017 11.995 14.572 1 28.51 ? O3' MGP 1000 A 1 
HETATM 19 C C2' MGP . . . C 2 -0.92 10.167 12.938 1 23.84 ? C2' MGP 1000 A 1 
HETATM 20 O O2' MGP . . . C 2 -1.959 10.841 12.164 1 24.63 ? O2' MGP 1000 A 1 
HETATM 21 C C1' MGP . . . C 2 0.214 9.649 12.051 1 20.5 ? C1' MGP 1000 A 1 
HETATM 22 N N9 MGP . . . C 2 1.006 8.456 12.581 1 17.27 ? N9 MGP 1000 A 1 
HETATM 23 C C8 MGP . . . C 2 2.143 8.337 13.291 1 16.69 ? C8 MGP 1000 A 1 
HETATM 24 N N7 MGP . . . C 2 2.395 7.077 13.485 1 15.91 ? N7 MGP 1000 A 1 
HETATM 25 C CM7 MGP . . . C 2 3.541 6.547 14.214 1 15.82 ? CM7 MGP 1000 A 1 
HETATM 26 C C5 MGP . . . C 2 1.371 6.198 12.872 1 14.1 ? C5 MGP 1000 A 1 
HETATM 27 C C6 MGP . . . C 2 1.141 4.93 12.765 1 13.88 ? C6 MGP 1000 A 1 
HETATM 28 O O6 MGP . . . C 2 1.907 4.015 13.268 1 13.54 ? O6 MGP 1000 A 1 
HETATM 29 N N1 MGP . . . C 2 -0.046 4.673 12.032 1 11.86 ? N1 MGP 1000 A 1 
HETATM 30 C C2 MGP . . . C 2 -0.892 5.639 11.48 1 13.74 ? C2 MGP 1000 A 1 
HETATM 31 N N2 MGP . . . C 2 -1.966 5.263 10.822 1 15.99 ? N2 MGP 1000 A 1 
HETATM 32 N N3 MGP . . . C 2 -0.64 6.943 11.601 1 12.62 ? N3 MGP 1000 A 1 
HETATM 33 C C4 MGP . . . C 2 0.522 7.221 12.316 1 16.14 ? C4 MGP 1000 A 1 
#
_model_server_stats.io_time_ms              41 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           282 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           33 
#