data_1L8D # _model_server_result.job_id nCq4WZrOn-fX_YwWI1rQZg _model_server_result.datetime_utc '2025-02-28 12:28:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l8d # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 1L8D # _exptl.entry_id 1L8D _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.55 _cell.angle_gamma 90 _cell.entry_id 1L8D _cell.length_a 31.958 _cell.length_b 77.868 _cell.length_c 53.33 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L8D _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N ? 3 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C HG HG . A HG 201 1_555 A SG CYS 50 A CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 C HG HG . A HG 201 1_555 A SG CYS 53 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 C HG HG . A HG 201 1_555 B SG CYS 50 B CYS 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc4 C HG HG . A HG 201 1_555 B SG CYS 53 B CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 257 n n P O2 PO4 sing 258 n n P O3 PO4 sing 259 n n P O4 PO4 sing 260 n n # _atom_sites.entry_id 1L8D _atom_sites.fract_transf_matrix[1][1] 0.031291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000847 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012842 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018758 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HG A 1 201 1 HG HG2 . D 3 PO4 A 1 302 2 PO4 PO4 . E 3 PO4 A 1 303 3 PO4 PO4 . F 3 PO4 A 1 304 4 PO4 PO4 . G 3 PO4 A 1 305 5 PO4 PO4 . H 3 PO4 A 1 306 6 PO4 PO4 . I 4 CIT A 1 507 6 CIT CIT . J 3 PO4 B 1 301 1 PO4 PO4 . K 5 HOH A 1 1 1 HOH HOH . K 5 HOH A 2 2 2 HOH HOH . K 5 HOH A 3 3 3 HOH HOH . K 5 HOH A 4 4 4 HOH HOH . K 5 HOH A 5 5 5 HOH HOH . K 5 HOH A 6 13 13 HOH HOH . K 5 HOH A 7 21 21 HOH HOH . K 5 HOH A 8 22 22 HOH HOH . K 5 HOH A 9 23 23 HOH HOH . K 5 HOH A 10 26 26 HOH HOH . K 5 HOH A 11 27 27 HOH HOH . K 5 HOH A 12 30 30 HOH HOH . K 5 HOH A 13 32 32 HOH HOH . K 5 HOH A 14 33 33 HOH HOH . K 5 HOH A 15 37 37 HOH HOH . K 5 HOH A 16 40 40 HOH HOH . K 5 HOH A 17 41 41 HOH HOH . K 5 HOH A 18 45 45 HOH HOH . K 5 HOH A 19 46 46 HOH HOH . K 5 HOH A 20 48 48 HOH HOH . K 5 HOH A 21 50 50 HOH HOH . K 5 HOH A 22 52 52 HOH HOH . K 5 HOH A 23 54 54 HOH HOH . K 5 HOH A 24 56 56 HOH HOH . K 5 HOH A 25 60 60 HOH HOH . K 5 HOH A 26 67 67 HOH HOH . K 5 HOH A 27 69 69 HOH HOH . K 5 HOH A 28 70 70 HOH HOH . K 5 HOH A 29 71 71 HOH HOH . K 5 HOH A 30 74 74 HOH HOH . K 5 HOH A 31 75 75 HOH HOH . K 5 HOH A 32 76 76 HOH HOH . K 5 HOH A 33 78 78 HOH HOH . K 5 HOH A 34 81 81 HOH HOH . K 5 HOH A 35 82 82 HOH HOH . K 5 HOH A 36 83 83 HOH HOH . K 5 HOH A 37 84 84 HOH HOH . K 5 HOH A 38 85 85 HOH HOH . K 5 HOH A 39 87 87 HOH HOH . K 5 HOH A 40 88 88 HOH HOH . K 5 HOH A 41 89 89 HOH HOH . K 5 HOH A 42 90 90 HOH HOH . K 5 HOH A 43 91 91 HOH HOH . K 5 HOH A 44 92 92 HOH HOH . K 5 HOH A 45 93 93 HOH HOH . K 5 HOH A 46 95 95 HOH HOH . K 5 HOH A 47 96 96 HOH HOH . K 5 HOH A 48 98 98 HOH HOH . K 5 HOH A 49 100 100 HOH HOH . K 5 HOH A 50 101 101 HOH HOH . K 5 HOH A 51 102 102 HOH HOH . K 5 HOH A 52 103 103 HOH HOH . K 5 HOH A 53 104 104 HOH HOH . K 5 HOH A 54 107 107 HOH HOH . K 5 HOH A 55 108 108 HOH HOH . K 5 HOH A 56 109 109 HOH HOH . K 5 HOH A 57 119 119 HOH HOH . K 5 HOH A 58 121 121 HOH HOH . K 5 HOH A 59 125 125 HOH HOH . K 5 HOH A 60 127 127 HOH HOH . K 5 HOH A 61 128 128 HOH HOH . K 5 HOH A 62 129 129 HOH HOH . K 5 HOH A 63 130 130 HOH HOH . K 5 HOH A 64 131 131 HOH HOH . K 5 HOH A 65 132 132 HOH HOH . K 5 HOH A 66 135 135 HOH HOH . K 5 HOH A 67 136 136 HOH HOH . K 5 HOH A 68 137 137 HOH HOH . K 5 HOH A 69 138 138 HOH HOH . K 5 HOH A 70 139 139 HOH HOH . K 5 HOH A 71 140 140 HOH HOH . K 5 HOH A 72 141 141 HOH HOH . K 5 HOH A 73 142 142 HOH HOH . K 5 HOH A 74 144 144 HOH HOH . L 5 HOH B 1 6 6 HOH HOH . L 5 HOH B 2 7 7 HOH HOH . L 5 HOH B 3 8 8 HOH HOH . L 5 HOH B 4 11 11 HOH HOH . L 5 HOH B 5 15 15 HOH HOH . L 5 HOH B 6 16 16 HOH HOH . L 5 HOH B 7 17 17 HOH HOH . L 5 HOH B 8 18 18 HOH HOH . L 5 HOH B 9 20 20 HOH HOH . L 5 HOH B 10 24 24 HOH HOH . L 5 HOH B 11 28 28 HOH HOH . L 5 HOH B 12 29 29 HOH HOH . L 5 HOH B 13 31 31 HOH HOH . L 5 HOH B 14 35 35 HOH HOH . L 5 HOH B 15 38 38 HOH HOH . L 5 HOH B 16 39 39 HOH HOH . L 5 HOH B 17 42 42 HOH HOH . L 5 HOH B 18 43 43 HOH HOH . L 5 HOH B 19 44 44 HOH HOH . L 5 HOH B 20 47 47 HOH HOH . L 5 HOH B 21 49 49 HOH HOH . L 5 HOH B 22 51 51 HOH HOH . L 5 HOH B 23 53 53 HOH HOH . L 5 HOH B 24 55 55 HOH HOH . L 5 HOH B 25 57 57 HOH HOH . L 5 HOH B 26 59 59 HOH HOH . L 5 HOH B 27 61 61 HOH HOH . L 5 HOH B 28 62 62 HOH HOH . L 5 HOH B 29 63 63 HOH HOH . L 5 HOH B 30 64 64 HOH HOH . L 5 HOH B 31 65 65 HOH HOH . L 5 HOH B 32 66 66 HOH HOH . L 5 HOH B 33 68 68 HOH HOH . L 5 HOH B 34 72 72 HOH HOH . L 5 HOH B 35 73 73 HOH HOH . L 5 HOH B 36 77 77 HOH HOH . L 5 HOH B 37 80 80 HOH HOH . L 5 HOH B 38 86 86 HOH HOH . L 5 HOH B 39 94 94 HOH HOH . L 5 HOH B 40 97 97 HOH HOH . L 5 HOH B 41 105 105 HOH HOH . L 5 HOH B 42 106 106 HOH HOH . L 5 HOH B 43 110 110 HOH HOH . L 5 HOH B 44 114 114 HOH HOH . L 5 HOH B 45 116 116 HOH HOH . L 5 HOH B 46 118 118 HOH HOH . L 5 HOH B 47 120 120 HOH HOH . L 5 HOH B 48 123 123 HOH HOH . L 5 HOH B 49 126 126 HOH HOH . L 5 HOH B 50 143 143 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . J 3 15.273 3.087 -2.997 1 66.39 ? P PO4 301 B 1 HETATM 2 O O1 PO4 . . . J 3 15.652 1.705 -2.612 1 68.02 ? O1 PO4 301 B 1 HETATM 3 O O2 PO4 . . . J 3 14.121 3.535 -2.173 1 67.06 ? O2 PO4 301 B 1 HETATM 4 O O3 PO4 . . . J 3 14.893 3.112 -4.427 1 67.35 ? O3 PO4 301 B 1 HETATM 5 O O4 PO4 . . . J 3 16.426 3.992 -2.772 1 67.61 ? O4 PO4 301 B 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #