data_1L8I # _model_server_result.job_id zfXHWKPv0HCMugRU0GBdDQ _model_server_result.datetime_utc '2025-03-04 23:28:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l8i # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"EA","auth_seq_id":307}' # _entry.id 1L8I # _exptl.entry_id 1L8I _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1L8I _cell.length_a 90.536 _cell.length_b 90.536 _cell.length_c 226.079 _cell.Z_PDB 36 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L8I _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 N N N ? 3 O N N ? 3 P N N ? 3 R N N ? 3 S N N ? 3 U N N ? 3 V N N ? 3 W N N ? 3 Y N N ? 3 Z N N ? 3 EA N N ? 3 JA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 82 A GLU 82 1_555 M K K . A K 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.363 ? metalc ? metalc2 B OE1 GLU 82 B GLU 82 1_555 Q K K . B K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.602 ? metalc ? metalc3 B OE2 GLU 82 B GLU 82 1_555 Q K K . B K 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.668 ? metalc ? metalc4 C OE1 GLU 82 C GLU 82 1_555 T K K . C K 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.664 ? metalc ? metalc5 E OE2 GLU 82 E GLU 82 1_555 AA K K . E K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc6 E OE1 GLN 86 E GLN 86 1_555 AA K K . E K 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.32 ? metalc ? metalc7 F OE1 GLU 82 F GLU 82 1_555 CA K K . F K 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.637 ? metalc ? metalc8 G OE1 GLU 82 G GLU 82 1_555 DA K K . G K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.336 ? metalc ? metalc9 G OE2 GLU 82 G GLU 82 1_555 DA K K . G K 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.524 ? metalc ? metalc10 J OE1 GLU 82 J GLU 82 1_555 HA K K . J K 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.681 ? metalc ? metalc11 L OE1 GLU 82 L GLU 82 1_555 IA K K . L K 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.51 ? metalc ? metalc12 L OE2 GLU 82 L GLU 82 1_555 IA K K . L K 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.592 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 1L8I _atom_sites.fract_transf_matrix[1][1] 0.011045 _atom_sites.fract_transf_matrix[1][2] 0.006377 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004423 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 K A 1 209 209 K K . N 3 TRS A 1 301 301 TRS TRS . O 3 TRS A 1 305 305 TRS TRS . P 3 TRS A 1 306 306 TRS TRS . Q 2 K B 1 206 206 K K . R 3 TRS B 1 308 308 TRS TRS . S 3 TRS B 1 310 310 TRS TRS . T 2 K C 1 212 212 K K . U 3 TRS C 1 302 302 TRS TRS . V 3 TRS C 1 303 303 TRS TRS . W 3 TRS C 1 304 304 TRS TRS . X 2 K D 1 203 203 K K . Y 3 TRS D 1 311 311 TRS TRS . Z 3 TRS D 1 312 312 TRS TRS . AA 2 K E 1 207 207 K K . BA 2 K E 1 208 208 K K . CA 2 K F 1 211 211 K K . DA 2 K G 1 201 201 K K . EA 3 TRS G 1 307 307 TRS TRS . FA 2 K H 1 205 205 K K . GA 2 K I 1 204 204 K K . HA 2 K J 1 202 202 K K . IA 2 K L 1 210 210 K K . JA 3 TRS L 1 309 309 TRS TRS . KA 4 HOH A 1 307 29 HOH HOH . KA 4 HOH A 2 308 32 HOH HOH . KA 4 HOH A 3 309 39 HOH HOH . KA 4 HOH A 4 310 40 HOH HOH . KA 4 HOH A 5 311 52 HOH HOH . KA 4 HOH A 6 312 53 HOH HOH . KA 4 HOH A 7 313 62 HOH HOH . KA 4 HOH A 8 314 65 HOH HOH . LA 4 HOH B 1 311 55 HOH HOH . LA 4 HOH B 2 312 71 HOH HOH . LA 4 HOH B 3 313 73 HOH HOH . LA 4 HOH B 4 314 75 HOH HOH . LA 4 HOH B 5 315 76 HOH HOH . LA 4 HOH B 6 316 78 HOH HOH . LA 4 HOH B 7 317 79 HOH HOH . LA 4 HOH B 8 318 93 HOH HOH . LA 4 HOH B 9 319 94 HOH HOH . LA 4 HOH B 10 320 96 HOH HOH . MA 4 HOH C 1 305 35 HOH HOH . MA 4 HOH C 2 306 44 HOH HOH . MA 4 HOH C 3 307 45 HOH HOH . MA 4 HOH C 4 308 72 HOH HOH . MA 4 HOH C 5 309 74 HOH HOH . MA 4 HOH C 6 310 85 HOH HOH . NA 4 HOH D 1 313 7 HOH HOH . NA 4 HOH D 2 314 8 HOH HOH . NA 4 HOH D 3 315 9 HOH HOH . NA 4 HOH D 4 316 15 HOH HOH . NA 4 HOH D 5 317 21 HOH HOH . NA 4 HOH D 6 318 25 HOH HOH . NA 4 HOH D 7 319 27 HOH HOH . NA 4 HOH D 8 320 33 HOH HOH . NA 4 HOH D 9 321 42 HOH HOH . NA 4 HOH D 10 322 47 HOH HOH . OA 4 HOH E 1 209 57 HOH HOH . OA 4 HOH E 2 210 66 HOH HOH . OA 4 HOH E 3 211 67 HOH HOH . OA 4 HOH E 4 212 69 HOH HOH . OA 4 HOH E 5 213 87 HOH HOH . OA 4 HOH E 6 214 88 HOH HOH . OA 4 HOH E 7 215 97 HOH HOH . OA 4 HOH E 8 216 98 HOH HOH . PA 4 HOH F 1 212 63 HOH HOH . PA 4 HOH F 2 213 68 HOH HOH . PA 4 HOH F 3 214 81 HOH HOH . QA 4 HOH G 1 308 1 HOH HOH . QA 4 HOH G 2 309 2 HOH HOH . QA 4 HOH G 3 310 5 HOH HOH . QA 4 HOH G 4 311 6 HOH HOH . QA 4 HOH G 5 312 12 HOH HOH . QA 4 HOH G 6 313 14 HOH HOH . QA 4 HOH G 7 314 16 HOH HOH . QA 4 HOH G 8 315 19 HOH HOH . QA 4 HOH G 9 316 23 HOH HOH . QA 4 HOH G 10 317 30 HOH HOH . QA 4 HOH G 11 318 34 HOH HOH . QA 4 HOH G 12 319 37 HOH HOH . QA 4 HOH G 13 320 41 HOH HOH . QA 4 HOH G 14 321 51 HOH HOH . RA 4 HOH H 1 206 20 HOH HOH . RA 4 HOH H 2 207 28 HOH HOH . RA 4 HOH H 3 208 38 HOH HOH . RA 4 HOH H 4 209 48 HOH HOH . RA 4 HOH H 5 210 49 HOH HOH . RA 4 HOH H 6 211 54 HOH HOH . RA 4 HOH H 7 212 58 HOH HOH . RA 4 HOH H 8 213 59 HOH HOH . RA 4 HOH H 9 214 61 HOH HOH . RA 4 HOH H 10 215 64 HOH HOH . SA 4 HOH I 1 205 10 HOH HOH . SA 4 HOH I 2 206 31 HOH HOH . SA 4 HOH I 3 207 36 HOH HOH . SA 4 HOH I 4 208 43 HOH HOH . SA 4 HOH I 5 209 46 HOH HOH . SA 4 HOH I 6 210 60 HOH HOH . TA 4 HOH J 1 203 3 HOH HOH . TA 4 HOH J 2 204 4 HOH HOH . TA 4 HOH J 3 205 11 HOH HOH . TA 4 HOH J 4 206 13 HOH HOH . TA 4 HOH J 5 207 17 HOH HOH . TA 4 HOH J 6 208 18 HOH HOH . TA 4 HOH J 7 209 22 HOH HOH . TA 4 HOH J 8 210 24 HOH HOH . TA 4 HOH J 9 211 26 HOH HOH . UA 4 HOH K 1 168 50 HOH HOH . UA 4 HOH K 2 169 56 HOH HOH . UA 4 HOH K 3 170 70 HOH HOH . UA 4 HOH K 4 171 80 HOH HOH . UA 4 HOH K 5 172 82 HOH HOH . UA 4 HOH K 6 173 83 HOH HOH . UA 4 HOH K 7 174 84 HOH HOH . VA 4 HOH L 1 310 77 HOH HOH . VA 4 HOH L 2 311 86 HOH HOH . VA 4 HOH L 3 312 89 HOH HOH . VA 4 HOH L 4 313 90 HOH HOH . VA 4 HOH L 5 314 91 HOH HOH . VA 4 HOH L 6 315 92 HOH HOH . VA 4 HOH L 7 316 95 HOH HOH . VA 4 HOH L 8 317 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . EA 3 -17.792 -27.229 10.451 1 31.31 ? C TRS 307 G 1 HETATM 2 C C1 TRS . . . EA 3 -17.035 -26.014 11.025 1 32.95 ? C1 TRS 307 G 1 HETATM 3 C C2 TRS . . . EA 3 -17.058 -28.502 10.958 1 31.8 ? C2 TRS 307 G 1 HETATM 4 C C3 TRS . . . EA 3 -17.941 -27.165 8.924 1 31.24 ? C3 TRS 307 G 1 HETATM 5 N N TRS . . . EA 3 -19.103 -27.196 11.149 1 30.92 ? N TRS 307 G 1 HETATM 6 O O1 TRS . . . EA 3 -16.842 -26.085 12.431 1 34.27 ? O1 TRS 307 G 1 HETATM 7 O O2 TRS . . . EA 3 -17.257 -29.615 10.099 1 32.17 ? O2 TRS 307 G 1 HETATM 8 O O3 TRS . . . EA 3 -18.621 -26 8.496 1 33.38 ? O3 TRS 307 G 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 8 #