data_1L8J # _model_server_result.job_id na5lJfeoBm1Tt3UBYPY67g _model_server_result.datetime_utc '2024-10-18 19:29:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l8j # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 1L8J # _exptl.entry_id 1L8J _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 734.039 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PHOSPHATIDYLETHANOLAMINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1L8J _cell.length_a 69.71 _cell.length_b 69.71 _cell.length_c 96.21 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L8J _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 3 2 1 NDG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 3 n C NAG 1 C 1 NAG D 1 NAG 3 n C NDG 2 C 2 NDG D 2 NAG 2 n D NAG 1 D 1 NAG E 1 NAG 2 n D NAG 2 D 2 NAG E 2 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 101 A CYS 101 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? covale ? covale1 A ND2 ASN 30 A ASN 30 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? covale ? covale2 A ND2 ASN 47 A ASN 47 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale3 A ND2 ASN 119 A ASN 119 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.452 ? covale ? covale4 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale5 C O4 NAG . C NAG 1 1_555 C C1 NDG . C NDG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.396 ? covale ? covale6 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.383 ? # _chem_comp.formula 'C40 H80 N O8 P' _chem_comp.formula_weight 734.039 _chem_comp.id PTY _chem_comp.mon_nstd_flag . _chem_comp.name PHOSPHATIDYLETHANOLAMINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1L8J _atom_sites.fract_transf_matrix[1][1] 0.014345 _atom_sites.fract_transf_matrix[1][2] 0.008281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010394 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 PTY A 1 200 1 PTY PEE . F 5 HOH A 1 201 188 HOH WAT . F 5 HOH A 2 202 189 HOH WAT . F 5 HOH A 3 203 190 HOH WAT . F 5 HOH A 4 204 191 HOH WAT . F 5 HOH A 5 205 192 HOH WAT . F 5 HOH A 6 206 193 HOH WAT . F 5 HOH A 7 207 194 HOH WAT . F 5 HOH A 8 208 195 HOH WAT . F 5 HOH A 9 209 196 HOH WAT . F 5 HOH A 10 210 197 HOH WAT . F 5 HOH A 11 211 198 HOH WAT . F 5 HOH A 12 212 199 HOH WAT . F 5 HOH A 13 213 200 HOH WAT . F 5 HOH A 14 214 201 HOH WAT . F 5 HOH A 15 215 202 HOH WAT . F 5 HOH A 16 216 203 HOH WAT . F 5 HOH A 17 217 204 HOH WAT . F 5 HOH A 18 218 205 HOH WAT . F 5 HOH A 19 219 206 HOH WAT . F 5 HOH A 20 220 207 HOH WAT . F 5 HOH A 21 221 208 HOH WAT . F 5 HOH A 22 222 209 HOH WAT . F 5 HOH A 23 223 210 HOH WAT . F 5 HOH A 24 224 212 HOH WAT . F 5 HOH A 25 225 213 HOH WAT . F 5 HOH A 26 226 214 HOH WAT . F 5 HOH A 27 227 215 HOH WAT . F 5 HOH A 28 228 216 HOH WAT . F 5 HOH A 29 229 217 HOH WAT . F 5 HOH A 30 230 219 HOH WAT . F 5 HOH A 31 231 220 HOH WAT . F 5 HOH A 32 232 221 HOH WAT . F 5 HOH A 33 233 222 HOH WAT . F 5 HOH A 34 234 223 HOH WAT . F 5 HOH A 35 235 224 HOH WAT . F 5 HOH A 36 236 225 HOH WAT . F 5 HOH A 37 237 226 HOH WAT . F 5 HOH A 38 238 227 HOH WAT . F 5 HOH A 39 239 228 HOH WAT . F 5 HOH A 40 240 229 HOH WAT . F 5 HOH A 41 241 230 HOH WAT . F 5 HOH A 42 242 231 HOH WAT . F 5 HOH A 43 243 232 HOH WAT . F 5 HOH A 44 244 233 HOH WAT . F 5 HOH A 45 245 234 HOH WAT . F 5 HOH A 46 246 235 HOH WAT . F 5 HOH A 47 247 236 HOH WAT . F 5 HOH A 48 248 237 HOH WAT . F 5 HOH A 49 249 238 HOH WAT . F 5 HOH A 50 250 239 HOH WAT . F 5 HOH A 51 251 240 HOH WAT . F 5 HOH A 52 252 241 HOH WAT . F 5 HOH A 53 253 242 HOH WAT . F 5 HOH A 54 254 243 HOH WAT . F 5 HOH A 55 255 244 HOH WAT . F 5 HOH A 56 256 245 HOH WAT . F 5 HOH A 57 257 246 HOH WAT . F 5 HOH A 58 258 247 HOH WAT . F 5 HOH A 59 259 248 HOH WAT . F 5 HOH A 60 260 249 HOH WAT . F 5 HOH A 61 261 250 HOH WAT . F 5 HOH A 62 262 251 HOH WAT . F 5 HOH A 63 263 252 HOH WAT . F 5 HOH A 64 264 253 HOH WAT . F 5 HOH A 65 265 254 HOH WAT . F 5 HOH A 66 266 255 HOH WAT . F 5 HOH A 67 267 256 HOH WAT . F 5 HOH A 68 268 257 HOH WAT . F 5 HOH A 69 269 258 HOH WAT . F 5 HOH A 70 270 259 HOH WAT . F 5 HOH A 71 271 260 HOH WAT . F 5 HOH A 72 272 261 HOH WAT . F 5 HOH A 73 273 262 HOH WAT . F 5 HOH A 74 274 263 HOH WAT . F 5 HOH A 75 275 264 HOH WAT . F 5 HOH A 76 276 265 HOH WAT . F 5 HOH A 77 277 266 HOH WAT . F 5 HOH A 78 278 267 HOH WAT . F 5 HOH A 79 279 268 HOH WAT . F 5 HOH A 80 280 269 HOH WAT . F 5 HOH A 81 281 270 HOH WAT . F 5 HOH A 82 282 271 HOH WAT . F 5 HOH A 83 283 272 HOH WAT . F 5 HOH A 84 284 273 HOH WAT . F 5 HOH A 85 285 274 HOH WAT . F 5 HOH A 86 286 275 HOH WAT . F 5 HOH A 87 287 276 HOH WAT . F 5 HOH A 88 288 277 HOH WAT . F 5 HOH A 89 289 278 HOH WAT . F 5 HOH A 90 290 279 HOH WAT . F 5 HOH A 91 291 280 HOH WAT . F 5 HOH A 92 292 291 HOH WAT . F 5 HOH A 93 293 292 HOH WAT . F 5 HOH A 94 294 293 HOH WAT . F 5 HOH A 95 295 294 HOH WAT . F 5 HOH A 96 296 295 HOH WAT . F 5 HOH A 97 297 296 HOH WAT . F 5 HOH A 98 298 297 HOH WAT . F 5 HOH A 99 299 298 HOH WAT . F 5 HOH A 100 300 301 HOH WAT . F 5 HOH A 101 301 302 HOH WAT . F 5 HOH A 102 302 303 HOH WAT . F 5 HOH A 103 303 304 HOH WAT . F 5 HOH A 104 304 305 HOH WAT . F 5 HOH A 105 305 306 HOH WAT . F 5 HOH A 106 306 307 HOH WAT . F 5 HOH A 107 307 308 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PTY . . . E 4 0.302 40.506 -3.239 1 58.77 ? C1 PTY 200 A 1 HETATM 2 C C2 PTY . . . E 4 1.953 37.077 1.041 1 72.49 ? C2 PTY 200 A 1 HETATM 3 C C3 PTY . . . E 4 2.073 38.585 1.288 1 71.89 ? C3 PTY 200 A 1 HETATM 4 O O4 PTY . . . E 4 -0.201 40.865 -4.564 1 59.19 ? O4 PTY 200 A 1 HETATM 5 C C5 PTY . . . E 4 2.535 40.824 -2.032 1 62.48 ? C5 PTY 200 A 1 HETATM 6 C C6 PTY . . . E 4 1.357 41.519 -2.75 1 59.88 ? C6 PTY 200 A 1 HETATM 7 O O7 PTY . . . E 4 0.696 42.418 -1.814 1 57.2 ? O7 PTY 200 A 1 HETATM 8 C C8 PTY . . . E 4 0.991 43.763 -1.778 1 52.64 ? C8 PTY 200 A 1 HETATM 9 O O10 PTY . . . E 4 2.096 44.255 -1.59 1 55.1 ? O10 PTY 200 A 1 HETATM 10 C C11 PTY . . . E 4 -0.257 44.589 -1.992 1 50.36 ? C11 PTY 200 A 1 HETATM 11 C C12 PTY . . . E 4 -0.091 46.074 -1.658 1 47.42 ? C12 PTY 200 A 1 HETATM 12 C C13 PTY . . . E 4 -1.43 46.788 -1.524 1 46.37 ? C13 PTY 200 A 1 HETATM 13 C C14 PTY . . . E 4 -1.656 47.804 -2.635 1 45.16 ? C14 PTY 200 A 1 HETATM 14 C C15 PTY . . . E 4 -2.305 49.087 -2.156 1 43.79 ? C15 PTY 200 A 1 HETATM 15 C C16 PTY . . . E 4 -1.306 50.239 -2.117 1 44.5 ? C16 PTY 200 A 1 HETATM 16 C C17 PTY . . . E 4 -1.883 51.52 -2.713 1 42.5 ? C17 PTY 200 A 1 HETATM 17 C C18 PTY . . . E 4 -1.776 52.693 -1.74 1 42.93 ? C18 PTY 200 A 1 HETATM 18 C C19 PTY . . . E 4 -0.514 53.507 -1.981 1 43.21 ? C19 PTY 200 A 1 HETATM 19 C C20 PTY . . . E 4 0.182 53.917 -0.695 1 41.16 ? C20 PTY 200 A 1 HETATM 20 C C21 PTY . . . E 4 1.695 53.747 -0.795 1 42.02 ? C21 PTY 200 A 1 HETATM 21 C C22 PTY . . . E 4 2.214 52.444 -0.171 1 41.98 ? C22 PTY 200 A 1 HETATM 22 C C23 PTY . . . E 4 1.584 52.105 1.183 1 43.19 ? C23 PTY 200 A 1 HETATM 23 C C24 PTY . . . E 4 2.2 50.854 1.797 1 43.68 ? C24 PTY 200 A 1 HETATM 24 C C25 PTY . . . E 4 2.879 51.155 3.127 1 43.68 ? C25 PTY 200 A 1 HETATM 25 C C26 PTY . . . E 4 2.414 50.235 4.251 1 45.42 ? C26 PTY 200 A 1 HETATM 26 C C27 PTY . . . E 4 2.74 48.76 4.001 1 44.99 ? C27 PTY 200 A 1 HETATM 27 C C28 PTY . . . E 4 2.242 47.893 5.15 1 45.32 ? C28 PTY 200 A 1 HETATM 28 C C29 PTY . . . E 4 2.559 46.438 4.902 1 48.18 ? C29 PTY 200 A 1 HETATM 29 C C30 PTY . . . E 4 -1.56 40.711 -4.817 1 57.36 ? C30 PTY 200 A 1 HETATM 30 C C31 PTY . . . E 4 -1.901 40.865 -6.302 1 55.57 ? C31 PTY 200 A 1 HETATM 31 O O30 PTY . . . E 4 -2.417 40.479 -3.969 1 61.01 ? O30 PTY 200 A 1 HETATM 32 C C32 PTY . . . E 4 -3.415 41.054 -6.614 1 53.92 ? C32 PTY 200 A 1 HETATM 33 C C33 PTY . . . E 4 -3.703 42.112 -7.711 1 51.75 ? C33 PTY 200 A 1 HETATM 34 C C34 PTY . . . E 4 -5.208 42.301 -8.038 1 49.42 ? C34 PTY 200 A 1 HETATM 35 C C35 PTY . . . E 4 -6.039 43.029 -6.958 1 47.79 ? C35 PTY 200 A 1 HETATM 36 C C36 PTY . . . E 4 -7.547 43.015 -7.297 1 47.69 ? C36 PTY 200 A 1 HETATM 37 C C37 PTY . . . E 4 -8.302 44.314 -6.975 1 45.45 ? C37 PTY 200 A 1 HETATM 38 C C38 PTY . . . E 4 -8.8 45.11 -8.207 1 45.06 ? C38 PTY 200 A 1 HETATM 39 C C39 PTY . . . E 4 -9.841 44.412 -9.117 1 43.17 ? C39 PTY 200 A 1 HETATM 40 C C40 PTY . . . E 4 -9.673 44.916 -10.579 1 43.65 ? C40 PTY 200 A 1 HETATM 41 C C41 PTY . . . E 4 -10.84 44.619 -11.533 1 44.14 ? C41 PTY 200 A 1 HETATM 42 C C42 PTY . . . E 4 -10.73 45.435 -12.849 1 43.28 ? C42 PTY 200 A 1 HETATM 43 C C43 PTY . . . E 4 -11.863 45.169 -13.845 1 43.59 ? C43 PTY 200 A 1 HETATM 44 C C44 PTY . . . E 4 -12.687 46.431 -14.161 1 43.45 ? C44 PTY 200 A 1 HETATM 45 P P1 PTY . . . E 4 3.593 40.663 0.429 1 72.21 ? P1 PTY 200 A 1 HETATM 46 O O11 PTY . . . E 4 3.255 39.084 0.606 1 72.66 ? O11 PTY 200 A 1 HETATM 47 O O12 PTY . . . E 4 3.371 41.346 1.801 1 70.08 ? O12 PTY 200 A 1 HETATM 48 O O13 PTY . . . E 4 5.113 40.885 -0.072 1 69.93 ? O13 PTY 200 A 1 HETATM 49 O O14 PTY . . . E 4 2.574 41.261 -0.656 1 67.3 ? O14 PTY 200 A 1 HETATM 50 N N1 PTY . . . E 4 3.108 36.528 1.44 1 73.28 ? N1 PTY 200 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 50 #