data_1L9H # _model_server_result.job_id RZ2dc1b3CEMiYY6spzRGxw _model_server_result.datetime_utc '2024-11-05 04:10:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l9h # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Z","auth_seq_id":1323}' # _entry.id 1L9H # _exptl.entry_id 1L9H _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 256.424 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PALMITIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1L9H _cell.length_a 96.745 _cell.length_b 96.745 _cell.length_c 149.3 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L9H _symmetry.cell_setting ? _symmetry.Int_Tables_number 76 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 PISA,PQS dimeric 2 software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,LA 1 1 B,E,F,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,MA 2 1 A,C,D,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,LA 3 1 B,E,F,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,MA 3 2 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 4 1 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 96.745 0 74.65 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 W N N ? 9 Y N N ? 9 Z N N ? 9 IA N N ? 9 KA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 MAN NAG C1 O1 . O4 HO4 . sing 3 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 4 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 5 ? 4 3 2 MAN NAG C1 O1 . O4 HO4 . sing 6 ? 4 4 3 MAN MAN C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n C NAG 1 C 1 NAG C 505 NAG 2 n C NAG 2 C 2 NAG C 504 NAG 2 n C MAN 3 C 3 MAN C 503 MAN 3 n D NAG 1 D 1 NAG E 705 NAG 3 n D NAG 2 D 2 NAG E 704 NAG 4 n E NAG 1 E 1 NAG D 605 NAG 4 n E NAG 2 E 2 NAG D 604 NAG 4 n E MAN 3 E 3 MAN D 603 MAN 4 n E MAN 4 E 4 MAN D 602 MAN 3 n F NAG 1 F 1 NAG F 805 NAG 3 n F NAG 2 F 2 NAG F 804 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 111 A CYS 110 1_555 A SG CYS 188 A CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf2 B SG CYS 111 B CYS 110 1_555 B SG CYS 188 B CYS 187 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? covale ? covale1 A C ACE 1 A ACE 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 A ND2 ASN 3 A ASN 2 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? covale ? covale3 A ND2 ASN 16 A ASN 15 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? covale ? covale4 A NZ LYS 297 A LYS 296 1_555 X C15 RET . A RET 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale5 A SG CYS 323 A CYS 322 1_555 Y C1 PLM . A PLM 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.877 ? covale ? covale6 A SG CYS 324 A CYS 323 1_555 Z C1 PLM . A PLM 1323 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.888 ? covale ? covale7 B C ACE 1 B ACE 0 1_555 B N MET 2 B MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale8 B ND2 ASN 3 B ASN 2 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? covale ? covale9 B ND2 ASN 16 B ASN 15 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.576 ? covale ? covale10 B NZ LYS 297 B LYS 296 1_555 JA C15 RET . B RET 1296 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.373 ? covale ? covale11 B SG CYS 323 B CYS 322 1_555 KA C1 PLM . B PLM 1322 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.887 ? covale ? covale12 C O4 NAG . C NAG 1 1_555 C C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale13 C O4 NAG . C NAG 2 1_555 C C1 MAN . C MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.386 ? covale ? covale14 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.379 ? covale ? covale15 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.377 ? covale ? covale16 E O4 NAG . E NAG 2 1_555 E C1 MAN . E MAN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? covale ? covale17 E O3 MAN . E MAN 3 1_555 E C1 MAN . E MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 ? covale ? covale18 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.395 ? metalc ? metalc1 A NE2 HIS 196 A HIS 195 1_555 R ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc2 A OE1 GLU 198 A GLU 197 1_555 R ZN ZN . A ZN 2011 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc3 A OE2 GLU 202 A GLU 201 1_555 O ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.933 ? metalc ? metalc4 A OE1 GLN 280 A GLN 279 1_555 O ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc5 A NE2 GLN 280 A GLN 279 1_555 O ZN ZN . A ZN 957 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.908 ? metalc ? metalc6 B O MET 164 B MET 163 1_555 HA ZN ZN . B ZN 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? metalc ? metalc7 B NE2 HIS 196 B HIS 195 1_555 FA ZN ZN . B ZN 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc8 B OE1 GLU 198 B GLU 197 1_555 FA ZN ZN . B ZN 956 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.943 ? metalc ? metalc9 B OE1 GLU 202 B GLU 201 1_555 GA ZN ZN . B ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc10 B OE2 GLU 202 B GLU 201 1_555 GA ZN ZN . B ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc11 B ND1 HIS 212 B HIS 211 1_555 HA ZN ZN . B ZN 963 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc12 B NE2 GLN 280 B GLN 279 1_555 GA ZN ZN . B ZN 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? # _chem_comp.formula 'C16 H32 O2' _chem_comp.formula_weight 256.424 _chem_comp.id PLM _chem_comp.mon_nstd_flag . _chem_comp.name 'PALMITIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PLM sing 396 n n C1 O2 PLM doub 397 n n C1 C2 PLM sing 398 n n O1 H PLM sing 399 n n C2 C3 PLM sing 400 n n C2 H21 PLM sing 401 n n C2 H22 PLM sing 402 n n C3 C4 PLM sing 403 n n C3 H31 PLM sing 404 n n C3 H32 PLM sing 405 n n C4 C5 PLM sing 406 n n C4 H41 PLM sing 407 n n C4 H42 PLM sing 408 n n C5 C6 PLM sing 409 n n C5 H51 PLM sing 410 n n C5 H52 PLM sing 411 n n C6 C7 PLM sing 412 n n C6 H61 PLM sing 413 n n C6 H62 PLM sing 414 n n C7 C8 PLM sing 415 n n C7 H71 PLM sing 416 n n C7 H72 PLM sing 417 n n C8 C9 PLM sing 418 n n C8 H81 PLM sing 419 n n C8 H82 PLM sing 420 n n C9 CA PLM sing 421 n n C9 H91 PLM sing 422 n n C9 H92 PLM sing 423 n n CA CB PLM sing 424 n n CA HA1 PLM sing 425 n n CA HA2 PLM sing 426 n n CB CC PLM sing 427 n n CB HB1 PLM sing 428 n n CB HB2 PLM sing 429 n n CC CD PLM sing 430 n n CC HC1 PLM sing 431 n n CC HC2 PLM sing 432 n n CD CE PLM sing 433 n n CD HD1 PLM sing 434 n n CD HD2 PLM sing 435 n n CE CF PLM sing 436 n n CE HE1 PLM sing 437 n n CE HE2 PLM sing 438 n n CF CG PLM sing 439 n n CF HF1 PLM sing 440 n n CF HF2 PLM sing 441 n n CG HG1 PLM sing 442 n n CG HG2 PLM sing 443 n n CG HG3 PLM sing 444 n n # _atom_sites.entry_id 1L9H _atom_sites.fract_transf_matrix[1][1] 0.010336 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 5 BNG A 1 1500 1500 BNG BNG . H 5 BNG A 1 1501 1501 BNG BNG . I 5 BNG A 1 1503 1503 BNG BNG . J 5 BNG A 1 1504 1504 BNG BNG . K 5 BNG A 1 1505 1505 BNG BNG . L 6 HG A 1 901 901 HG HG . M 6 HG A 1 903 903 HG HG . N 6 HG A 1 905 905 HG HG . O 7 ZN A 1 957 957 ZN ZN . P 7 ZN A 1 959 959 ZN ZN . Q 7 ZN A 1 962 962 ZN ZN . R 7 ZN A 1 2011 2011 ZN ZN . S 8 HTO A 1 1400 1400 HTO HTO . T 8 HTO A 1 1401 1401 HTO HTO . U 8 HTO A 1 1404 1404 HTO HTO . V 8 HTO A 1 1405 1405 HTO HTO . W 9 PLM A 1 1410 1410 PLM PLY . X 10 RET A 1 1296 1296 RET RET . Y 9 PLM A 1 1322 1322 PLM PLY . Z 9 PLM A 1 1323 1323 PLM PLY . AA 5 BNG B 1 1502 1502 BNG BNG . BA 5 BNG B 1 1506 1506 BNG BNG . CA 6 HG B 1 902 902 HG HG . DA 6 HG B 1 904 904 HG HG . EA 6 HG B 1 906 906 HG HG . FA 7 ZN B 1 956 956 ZN ZN . GA 7 ZN B 1 958 958 ZN ZN . HA 7 ZN B 1 963 963 ZN ZN . IA 9 PLM B 1 1407 1407 PLM PLY . JA 10 RET B 1 1296 1296 RET RET . KA 9 PLM B 1 1322 1322 PLM PLY . LA 11 HOH A 1 964 964 HOH HOH . LA 11 HOH A 2 2000 2000 HOH HOH . LA 11 HOH A 3 2002 2002 HOH HOH . LA 11 HOH A 4 2004 2004 HOH HOH . LA 11 HOH A 5 2007 2007 HOH HOH . LA 11 HOH A 6 2014 2014 HOH HOH . LA 11 HOH A 7 2015 2015 HOH HOH . LA 11 HOH A 8 2017 2017 HOH HOH . LA 11 HOH A 9 2020 2020 HOH HOH . LA 11 HOH A 10 2021 2021 HOH HOH . LA 11 HOH A 11 2024 2024 HOH HOH . LA 11 HOH A 12 2027 2027 HOH HOH . LA 11 HOH A 13 2028 2028 HOH HOH . MA 11 HOH B 1 2005 2005 HOH HOH . MA 11 HOH B 2 2008 2008 HOH HOH . MA 11 HOH B 3 2009 2009 HOH HOH . MA 11 HOH B 4 2012 2012 HOH HOH . MA 11 HOH B 5 2013 2013 HOH HOH . MA 11 HOH B 6 2016 2016 HOH HOH . MA 11 HOH B 7 2018 2018 HOH HOH . MA 11 HOH B 8 2019 2019 HOH HOH . MA 11 HOH B 9 2022 2022 HOH HOH . MA 11 HOH B 10 2023 2023 HOH HOH . MA 11 HOH B 11 2025 2025 HOH HOH . MA 11 HOH B 12 2026 2026 HOH HOH . MA 11 HOH B 13 2029 2029 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PLM . . . Z 9 83.271 5.661 -10.559 1 109.6 ? C1 PLM 1323 A 1 HETATM 2 O O2 PLM . . . Z 9 82.893 5.971 -11.678 1 109.82 ? O2 PLM 1323 A 1 HETATM 3 C C2 PLM . . . Z 9 82.83 4.301 -9.985 1 108.93 ? C2 PLM 1323 A 1 HETATM 4 C C3 PLM . . . Z 9 82.506 3.234 -11.043 1 107.85 ? C3 PLM 1323 A 1 HETATM 5 C C4 PLM . . . Z 9 81.034 2.8 -11.026 1 106.51 ? C4 PLM 1323 A 1 HETATM 6 C C5 PLM . . . Z 9 80.824 1.513 -11.824 1 104.84 ? C5 PLM 1323 A 1 HETATM 7 C C6 PLM . . . Z 9 79.693 0.677 -11.241 1 102.61 ? C6 PLM 1323 A 1 HETATM 8 C C7 PLM . . . Z 9 79.742 -0.76 -11.736 1 100.01 ? C7 PLM 1323 A 1 HETATM 9 C C8 PLM . . . Z 9 78.547 -1.577 -11.222 1 97.43 ? C8 PLM 1323 A 1 HETATM 10 C C9 PLM . . . Z 9 78.915 -3.041 -10.964 1 94.98 ? C9 PLM 1323 A 1 HETATM 11 C CA PLM . . . Z 9 78.343 -3.98 -12.014 1 93.06 ? CA PLM 1323 A 1 HETATM 12 C CB PLM . . . Z 9 77.832 -5.269 -11.386 1 90.66 ? CB PLM 1323 A 1 HETATM 13 C CC PLM . . . Z 9 77.07 -6.129 -12.398 1 88.72 ? CC PLM 1323 A 1 HETATM 14 C CD PLM . . . Z 9 76.521 -7.401 -11.759 1 87.38 ? CD PLM 1323 A 1 HETATM 15 C CE PLM . . . Z 9 77.63 -8.402 -11.516 1 86.05 ? CE PLM 1323 A 1 HETATM 16 C CF PLM . . . Z 9 77.143 -9.658 -10.826 1 85.55 ? CF PLM 1323 A 1 HETATM 17 C CG PLM . . . Z 9 78.299 -10.629 -10.596 1 84.6 ? CG PLM 1323 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #