data_1L9J
#
_model_server_result.job_id            ppuD0nLVURO1M1rmixHYog 
_model_server_result.datetime_utc      '2025-03-04 09:32:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l9j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":1007}' 
#
_entry.id    1L9J 
#
_exptl.entry_id    1L9J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              55.845 
_entity.id                          7 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          92.41 
_cell.angle_gamma         90 
_cell.entry_id            1L9J 
_cell.length_a            77.93 
_cell.length_b            80.312 
_cell.length_c            246.575 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L9J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? tetrameric 4 author_defined_assembly 1 
? tetrameric 4 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,I,J,K,L,M,N,O,P,Q,R,S,T,GA,HA,IA,JA 1 1 
E,F,G,H,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,KA,LA,MA,NA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 7 L N N 
? 7 X N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D SG CYS 15 C CYS 15 1_555 T CAB HEM . C HEM 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.778 ? 
covale ? covale2 D SG CYS 18 C CYS 18 1_555 T CAC HEM . C HEM 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? 
covale ? covale3 H SG CYS 15 D CYS 15 1_555 FA CAB HEM . D HEM 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? 
covale ? covale4 H SG CYS 18 D CYS 18 1_555 FA CAC HEM . D HEM 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? 
metalc ? metalc1 A NE2 HIS 153 L HIS 153 1_555 J MG BCL . L BCL 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? 
metalc ? metalc2 A NE2 HIS 173 L HIS 173 1_555 I MG BCL . L BCL 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.462 ? 
metalc ? metalc3 A NE2 HIS 190 L HIS 190 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc4 A NE2 HIS 230 L HIS 230 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.952 ? 
metalc ? metalc5 B NE2 HIS 182 M HIS 182 1_555 N MG BCL . M BCL 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.459 ? 
metalc ? metalc6 B NE2 HIS 202 M HIS 202 1_555 O MG BCL . M BCL 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? 
metalc ? metalc7 B NE2 HIS 219 M HIS 219 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc8 B OE1 GLU 234 M GLU 234 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
metalc ? metalc9 B OE2 GLU 234 M GLU 234 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? 
metalc ? metalc10 B NE2 HIS 266 M HIS 266 1_555 L FE FE2 . M FE2 1007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? 
metalc ? metalc11 D NE2 HIS 19 C HIS 19 1_555 T FE HEM . C HEM 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.997 ? 
metalc ? metalc12 D SD MET 100 C MET 100 1_555 T FE HEM . C HEM 1009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.279 ? 
metalc ? metalc13 E NE2 HIS 153 R HIS 153 1_555 V MG BCL . R BCL 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.659 ? 
metalc ? metalc14 E NE2 HIS 173 R HIS 173 1_555 U MG BCL . R BCL 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? 
metalc ? metalc15 E NE2 HIS 190 R HIS 190 1_555 X FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc16 E NE2 HIS 230 R HIS 230 1_555 X FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? 
metalc ? metalc17 F NE2 HIS 182 S HIS 182 1_555 Z MG BCL . S BCL 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? 
metalc ? metalc18 F NE2 HIS 202 S HIS 202 1_555 AA MG BCL . S BCL 2003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc19 F NE2 HIS 219 S HIS 219 1_555 X FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? 
metalc ? metalc20 F OE1 GLU 234 S GLU 234 1_555 X FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.265 ? 
metalc ? metalc21 F OE2 GLU 234 S GLU 234 1_555 X FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? 
metalc ? metalc22 F NE2 HIS 266 S HIS 266 1_555 X FE FE2 . S FE2 2007 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? 
metalc ? metalc23 H NE2 HIS 19 D HIS 19 1_555 FA FE HEM . D HEM 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? 
metalc ? metalc24 H SD MET 100 D MET 100 1_555 FA FE HEM . D HEM 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? 
#
_chem_comp.formula           'Fe 2' 
_chem_comp.formula_weight    55.845 
_chem_comp.id                FE2 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1L9J 
_atom_sites.fract_transf_matrix[1][1]    0.012832 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.00054 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012451 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004059 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
I 5 BCL L 1 1002 1002 BCL BCL . 
J 5 BCL L 1 1004 1004 BCL BCL . 
K 6 BPH L 1 1005 1005 BPH BPH . 
L 7 FE2 M 1 1007 1007 FE2 FE2 . 
M 8 CL M 1 1012 1012 CL CL . 
N 5 BCL M 1 1001 1001 BCL BCL . 
O 5 BCL M 1 1003 1003 BCL BCL . 
P 6 BPH M 1 1006 1006 BPH BPH . 
Q 9 U10 M 1 1008 1008 U10 U10 . 
R 10 LDA M 1 1010 1010 LDA LDA . 
S 10 LDA M 1 1011 1011 LDA LDA . 
T 11 HEM C 1 1009 1009 HEM HEM . 
U 5 BCL R 1 2002 2002 BCL BCL . 
V 5 BCL R 1 2004 2004 BCL BCL . 
W 6 BPH R 1 2005 2005 BPH BPH . 
X 7 FE2 S 1 2007 2007 FE2 FE2 . 
Y 8 CL S 1 2012 2012 CL CL . 
Z 5 BCL S 1 2001 2001 BCL BCL . 
AA 5 BCL S 1 2003 2003 BCL BCL . 
BA 6 BPH S 1 2006 2006 BPH BPH . 
CA 9 U10 S 1 2008 2008 U10 U10 . 
DA 10 LDA S 1 2010 2010 LDA LDA . 
EA 10 LDA S 1 2011 2011 LDA LDA . 
FA 11 HEM D 1 2009 2009 HEM HEM . 
GA 12 HOH L 1 1006 3 HOH HOH . 
GA 12 HOH L 2 1007 5 HOH HOH . 
GA 12 HOH L 3 1008 16 HOH HOH . 
GA 12 HOH L 4 1009 21 HOH HOH . 
GA 12 HOH L 5 1010 26 HOH HOH . 
GA 12 HOH L 6 1011 31 HOH HOH . 
GA 12 HOH L 7 1012 33 HOH HOH . 
GA 12 HOH L 8 1013 34 HOH HOH . 
GA 12 HOH L 9 1014 38 HOH HOH . 
GA 12 HOH L 10 1015 40 HOH HOH . 
GA 12 HOH L 11 1016 50 HOH HOH . 
GA 12 HOH L 12 1017 55 HOH HOH . 
GA 12 HOH L 13 1018 56 HOH HOH . 
GA 12 HOH L 14 1019 61 HOH HOH . 
GA 12 HOH L 15 1020 63 HOH HOH . 
GA 12 HOH L 16 1021 64 HOH HOH . 
GA 12 HOH L 17 1022 65 HOH HOH . 
GA 12 HOH L 18 1023 71 HOH HOH . 
GA 12 HOH L 19 1024 74 HOH HOH . 
GA 12 HOH L 20 1025 76 HOH HOH . 
GA 12 HOH L 21 1026 79 HOH HOH . 
GA 12 HOH L 22 1027 84 HOH HOH . 
GA 12 HOH L 23 1028 92 HOH HOH . 
GA 12 HOH L 24 1029 104 HOH HOH . 
GA 12 HOH L 25 1030 107 HOH HOH . 
GA 12 HOH L 26 1031 112 HOH HOH . 
GA 12 HOH L 27 1032 113 HOH HOH . 
GA 12 HOH L 28 1033 115 HOH HOH . 
GA 12 HOH L 29 1034 118 HOH HOH . 
GA 12 HOH L 30 1035 123 HOH HOH . 
GA 12 HOH L 31 1036 127 HOH HOH . 
GA 12 HOH L 32 1037 130 HOH HOH . 
HA 12 HOH M 1 1013 2 HOH HOH . 
HA 12 HOH M 2 1014 18 HOH HOH . 
HA 12 HOH M 3 1015 19 HOH HOH . 
HA 12 HOH M 4 1016 24 HOH HOH . 
HA 12 HOH M 5 1017 25 HOH HOH . 
HA 12 HOH M 6 1018 43 HOH HOH . 
HA 12 HOH M 7 1019 46 HOH HOH . 
HA 12 HOH M 8 1020 62 HOH HOH . 
HA 12 HOH M 9 1021 66 HOH HOH . 
HA 12 HOH M 10 1022 75 HOH HOH . 
HA 12 HOH M 11 1023 86 HOH HOH . 
HA 12 HOH M 12 1024 100 HOH HOH . 
HA 12 HOH M 13 1025 103 HOH HOH . 
HA 12 HOH M 14 1026 129 HOH HOH . 
IA 12 HOH H 1 261 4 HOH HOH . 
IA 12 HOH H 2 262 6 HOH HOH . 
IA 12 HOH H 3 263 9 HOH HOH . 
IA 12 HOH H 4 264 12 HOH HOH . 
IA 12 HOH H 5 265 13 HOH HOH . 
IA 12 HOH H 6 266 20 HOH HOH . 
IA 12 HOH H 7 267 32 HOH HOH . 
IA 12 HOH H 8 268 35 HOH HOH . 
IA 12 HOH H 9 269 45 HOH HOH . 
IA 12 HOH H 10 270 48 HOH HOH . 
IA 12 HOH H 11 271 53 HOH HOH . 
IA 12 HOH H 12 272 57 HOH HOH . 
IA 12 HOH H 13 273 59 HOH HOH . 
IA 12 HOH H 14 274 82 HOH HOH . 
IA 12 HOH H 15 275 88 HOH HOH . 
IA 12 HOH H 16 276 101 HOH HOH . 
IA 12 HOH H 17 277 121 HOH HOH . 
IA 12 HOH H 18 278 122 HOH HOH . 
JA 12 HOH C 1 1010 15 HOH HOH . 
JA 12 HOH C 2 1011 47 HOH HOH . 
JA 12 HOH C 3 1012 69 HOH HOH . 
JA 12 HOH C 4 1013 73 HOH HOH . 
JA 12 HOH C 5 1014 77 HOH HOH . 
JA 12 HOH C 6 1015 80 HOH HOH . 
JA 12 HOH C 7 1016 97 HOH HOH . 
JA 12 HOH C 8 1017 116 HOH HOH . 
JA 12 HOH C 9 1018 124 HOH HOH . 
JA 12 HOH C 10 1019 125 HOH HOH . 
KA 12 HOH R 1 2006 7 HOH HOH . 
KA 12 HOH R 2 2007 11 HOH HOH . 
KA 12 HOH R 3 2008 14 HOH HOH . 
KA 12 HOH R 4 2009 28 HOH HOH . 
KA 12 HOH R 5 2010 51 HOH HOH . 
KA 12 HOH R 6 2011 58 HOH HOH . 
KA 12 HOH R 7 2012 72 HOH HOH . 
KA 12 HOH R 8 2013 83 HOH HOH . 
KA 12 HOH R 9 2014 85 HOH HOH . 
KA 12 HOH R 10 2015 89 HOH HOH . 
KA 12 HOH R 11 2016 94 HOH HOH . 
KA 12 HOH R 12 2017 99 HOH HOH . 
KA 12 HOH R 13 2018 102 HOH HOH . 
KA 12 HOH R 14 2019 105 HOH HOH . 
KA 12 HOH R 15 2020 106 HOH HOH . 
KA 12 HOH R 16 2021 108 HOH HOH . 
KA 12 HOH R 17 2022 110 HOH HOH . 
KA 12 HOH R 18 2023 117 HOH HOH . 
LA 12 HOH S 1 2013 1 HOH HOH . 
LA 12 HOH S 2 2014 10 HOH HOH . 
LA 12 HOH S 3 2015 22 HOH HOH . 
LA 12 HOH S 4 2016 39 HOH HOH . 
LA 12 HOH S 5 2017 41 HOH HOH . 
LA 12 HOH S 6 2018 42 HOH HOH . 
LA 12 HOH S 7 2019 52 HOH HOH . 
LA 12 HOH S 8 2020 60 HOH HOH . 
LA 12 HOH S 9 2021 70 HOH HOH . 
LA 12 HOH S 10 2022 78 HOH HOH . 
LA 12 HOH S 11 2023 87 HOH HOH . 
LA 12 HOH S 12 2024 90 HOH HOH . 
LA 12 HOH S 13 2025 91 HOH HOH . 
LA 12 HOH S 14 2026 111 HOH HOH . 
LA 12 HOH S 15 2027 120 HOH HOH . 
MA 12 HOH T 1 261 8 HOH HOH . 
MA 12 HOH T 2 262 23 HOH HOH . 
MA 12 HOH T 3 263 30 HOH HOH . 
MA 12 HOH T 4 264 36 HOH HOH . 
MA 12 HOH T 5 265 37 HOH HOH . 
MA 12 HOH T 6 266 49 HOH HOH . 
MA 12 HOH T 7 267 54 HOH HOH . 
MA 12 HOH T 8 268 68 HOH HOH . 
MA 12 HOH T 9 269 81 HOH HOH . 
MA 12 HOH T 10 270 96 HOH HOH . 
MA 12 HOH T 11 271 114 HOH HOH . 
MA 12 HOH T 12 272 119 HOH HOH . 
MA 12 HOH T 13 273 128 HOH HOH . 
NA 12 HOH D 1 2010 17 HOH HOH . 
NA 12 HOH D 2 2011 27 HOH HOH . 
NA 12 HOH D 3 2012 29 HOH HOH . 
NA 12 HOH D 4 2013 44 HOH HOH . 
NA 12 HOH D 5 2014 67 HOH HOH . 
NA 12 HOH D 6 2015 93 HOH HOH . 
NA 12 HOH D 7 2016 95 HOH HOH . 
NA 12 HOH D 8 2017 109 HOH HOH . 
NA 12 HOH D 9 2018 126 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           FE 
_atom_site.label_atom_id         FE 
_atom_site.label_comp_id         FE2 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         L 
_atom_site.label_entity_id       7 
_atom_site.Cartn_x               142.502 
_atom_site.Cartn_y               58.225 
_atom_site.Cartn_z               -33.944 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        45.65 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          FE 
_atom_site.auth_comp_id          FE2 
_atom_site.auth_seq_id           1007 
_atom_site.auth_asym_id          M 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           496 
_model_server_stats.encode_time_ms          18 
_model_server_stats.element_count           1 
#