data_1L9K
#
_model_server_result.job_id            Pc8xYrDCwNsrH8zAUGeD1Q 
_model_server_result.datetime_utc      '2024-11-05 11:04:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1l9k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":887}' 
#
_entry.id    1L9K 
#
_exptl.entry_id    1L9K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1L9K 
_cell.length_a            111.56 
_cell.length_b            111.56 
_cell.length_c            56.33 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1L9K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H 1 1 
A,B,C,D,E,F,G,H 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_555 -x,-x+y,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 18.776667 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 277 n n 
N HN1 SAH sing 278 n n 
N HN2 SAH sing 279 n n 
CA CB SAH sing 280 n n 
CA C SAH sing 281 n n 
CA HA SAH sing 282 n n 
CB CG SAH sing 283 n n 
CB HB1 SAH sing 284 n n 
CB HB2 SAH sing 285 n n 
CG SD SAH sing 286 n n 
CG HG1 SAH sing 287 n n 
CG HG2 SAH sing 288 n n 
SD C5' SAH sing 289 n n 
C O SAH doub 290 n n 
C OXT SAH sing 291 n n 
OXT HXT SAH sing 292 n n 
C5' C4' SAH sing 293 n n 
C5' "H5'1" SAH sing 294 n n 
C5' "H5'2" SAH sing 295 n n 
C4' O4' SAH sing 296 n n 
C4' C3' SAH sing 297 n n 
C4' H4' SAH sing 298 n n 
O4' C1' SAH sing 299 n n 
C3' O3' SAH sing 300 n n 
C3' C2' SAH sing 301 n n 
C3' H3' SAH sing 302 n n 
O3' HO3' SAH sing 303 n n 
C2' O2' SAH sing 304 n n 
C2' C1' SAH sing 305 n n 
C2' H2' SAH sing 306 n n 
O2' HO2' SAH sing 307 n n 
C1' N9 SAH sing 308 n n 
C1' H1' SAH sing 309 n n 
N9 C8 SAH sing 310 n y 
N9 C4 SAH sing 311 n y 
C8 N7 SAH doub 312 n y 
C8 H8 SAH sing 313 n n 
N7 C5 SAH sing 314 n y 
C5 C6 SAH sing 315 n y 
C5 C4 SAH doub 316 n y 
C6 N6 SAH sing 317 n n 
C6 N1 SAH doub 318 n y 
N6 HN61 SAH sing 319 n n 
N6 HN62 SAH sing 320 n n 
N1 C2 SAH sing 321 n y 
C2 N3 SAH doub 322 n y 
C2 H2 SAH sing 323 n n 
N3 C4 SAH sing 324 n y 
#
_atom_sites.entry_id                     1L9K 
_atom_sites.fract_transf_matrix[1][1]    0.008964 
_atom_sites.fract_transf_matrix[1][2]    0.005175 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01035 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017753 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 901 901 SO4 SO4 . 
C 2 SO4 A 1 902 902 SO4 SO4 . 
D 2 SO4 A 1 903 903 SO4 SO4 . 
E 2 SO4 A 1 904 904 SO4 SO4 . 
F 2 SO4 A 1 905 905 SO4 SO4 . 
G 3 SAH A 1 887 887 SAH SAH . 
H 4 HOH A 1 906 1 HOH WAT . 
H 4 HOH A 2 907 2 HOH WAT . 
H 4 HOH A 3 908 3 HOH WAT . 
H 4 HOH A 4 909 4 HOH WAT . 
H 4 HOH A 5 910 5 HOH WAT . 
H 4 HOH A 6 911 6 HOH WAT . 
H 4 HOH A 7 912 7 HOH WAT . 
H 4 HOH A 8 913 8 HOH WAT . 
H 4 HOH A 9 914 9 HOH WAT . 
H 4 HOH A 10 915 10 HOH WAT . 
H 4 HOH A 11 916 11 HOH WAT . 
H 4 HOH A 12 917 12 HOH WAT . 
H 4 HOH A 13 918 13 HOH WAT . 
H 4 HOH A 14 919 14 HOH WAT . 
H 4 HOH A 15 920 15 HOH WAT . 
H 4 HOH A 16 921 16 HOH WAT . 
H 4 HOH A 17 922 17 HOH WAT . 
H 4 HOH A 18 923 18 HOH WAT . 
H 4 HOH A 19 924 19 HOH WAT . 
H 4 HOH A 20 925 20 HOH WAT . 
H 4 HOH A 21 926 21 HOH WAT . 
H 4 HOH A 22 927 22 HOH WAT . 
H 4 HOH A 23 928 23 HOH WAT . 
H 4 HOH A 24 929 24 HOH WAT . 
H 4 HOH A 25 930 25 HOH WAT . 
H 4 HOH A 26 931 26 HOH WAT . 
H 4 HOH A 27 932 27 HOH WAT . 
H 4 HOH A 28 933 28 HOH WAT . 
H 4 HOH A 29 934 29 HOH WAT . 
H 4 HOH A 30 935 30 HOH WAT . 
H 4 HOH A 31 936 31 HOH WAT . 
H 4 HOH A 32 937 32 HOH WAT . 
H 4 HOH A 33 938 33 HOH WAT . 
H 4 HOH A 34 939 34 HOH WAT . 
H 4 HOH A 35 940 35 HOH WAT . 
H 4 HOH A 36 941 36 HOH WAT . 
H 4 HOH A 37 942 37 HOH WAT . 
H 4 HOH A 38 943 38 HOH WAT . 
H 4 HOH A 39 944 39 HOH WAT . 
H 4 HOH A 40 945 40 HOH WAT . 
H 4 HOH A 41 946 41 HOH WAT . 
H 4 HOH A 42 947 42 HOH WAT . 
H 4 HOH A 43 948 43 HOH WAT . 
H 4 HOH A 44 949 44 HOH WAT . 
H 4 HOH A 45 950 45 HOH WAT . 
H 4 HOH A 46 951 46 HOH WAT . 
H 4 HOH A 47 952 47 HOH WAT . 
H 4 HOH A 48 953 48 HOH WAT . 
H 4 HOH A 49 954 49 HOH WAT . 
H 4 HOH A 50 955 50 HOH WAT . 
H 4 HOH A 51 956 51 HOH WAT . 
H 4 HOH A 52 957 52 HOH WAT . 
H 4 HOH A 53 958 53 HOH WAT . 
H 4 HOH A 54 959 54 HOH WAT . 
H 4 HOH A 55 960 55 HOH WAT . 
H 4 HOH A 56 961 56 HOH WAT . 
H 4 HOH A 57 962 57 HOH WAT . 
H 4 HOH A 58 963 58 HOH WAT . 
H 4 HOH A 59 964 59 HOH WAT . 
H 4 HOH A 60 965 60 HOH WAT . 
H 4 HOH A 61 966 61 HOH WAT . 
H 4 HOH A 62 967 62 HOH WAT . 
H 4 HOH A 63 968 63 HOH WAT . 
H 4 HOH A 64 969 64 HOH WAT . 
H 4 HOH A 65 970 65 HOH WAT . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . G 3 10.071 -45.76 -0.799 1 60.02 ? N SAH 887 A 1 
HETATM 2 C CA SAH . . . G 3 11.33 -46.226 -1.37 1 59.83 ? CA SAH 887 A 1 
HETATM 3 C CB SAH . . . G 3 12.538 -46.224 -0.397 1 62 ? CB SAH 887 A 1 
HETATM 4 C CG SAH . . . G 3 12.428 -45.397 0.772 1 62.52 ? CG SAH 887 A 1 
HETATM 5 S SD SAH . . . G 3 13.927 -45.412 1.835 1 68.91 ? SD SAH 887 A 1 
HETATM 6 C C SAH . . . G 3 11.166 -47.621 -2.029 1 59.53 ? C SAH 887 A 1 
HETATM 7 O O SAH . . . G 3 10.005 -48.078 -2.003 1 60.01 ? O SAH 887 A 1 
HETATM 8 O OXT SAH . . . G 3 11.686 -47.652 -3.169 1 58.91 ? OXT SAH 887 A 1 
HETATM 9 C C5' SAH . . . G 3 14.177 -43.611 1.893 1 63.2 ? C5' SAH 887 A 1 
HETATM 10 C C4' SAH . . . G 3 15.393 -43.062 1.142 1 62.89 ? C4' SAH 887 A 1 
HETATM 11 O O4' SAH . . . G 3 15.468 -41.626 1.289 1 59.75 ? O4' SAH 887 A 1 
HETATM 12 C C3' SAH . . . G 3 16.731 -43.584 1.66 1 60.78 ? C3' SAH 887 A 1 
HETATM 13 O O3' SAH . . . G 3 17.216 -44.531 0.694 1 61.87 ? O3' SAH 887 A 1 
HETATM 14 C C2' SAH . . . G 3 17.678 -42.377 1.765 1 60.52 ? C2' SAH 887 A 1 
HETATM 15 O O2' SAH . . . G 3 18.964 -42.506 1.173 1 59.64 ? O2' SAH 887 A 1 
HETATM 16 C C1' SAH . . . G 3 16.81 -41.237 1.216 1 59.46 ? C1' SAH 887 A 1 
HETATM 17 N N9 SAH . . . G 3 16.975 -39.932 1.889 1 56.67 ? N9 SAH 887 A 1 
HETATM 18 C C8 SAH . . . G 3 17.064 -39.64 3.24 1 54.98 ? C8 SAH 887 A 1 
HETATM 19 N N7 SAH . . . G 3 17.199 -38.364 3.496 1 54.08 ? N7 SAH 887 A 1 
HETATM 20 C C5 SAH . . . G 3 17.2 -37.766 2.237 1 53.86 ? C5 SAH 887 A 1 
HETATM 21 C C6 SAH . . . G 3 17.303 -36.416 1.806 1 52.08 ? C6 SAH 887 A 1 
HETATM 22 N N6 SAH . . . G 3 17.436 -35.402 2.642 1 52.04 ? N6 SAH 887 A 1 
HETATM 23 N N1 SAH . . . G 3 17.266 -36.156 0.453 1 52.24 ? N1 SAH 887 A 1 
HETATM 24 C C2 SAH . . . G 3 17.13 -37.195 -0.364 1 52.8 ? C2 SAH 887 A 1 
HETATM 25 N N3 SAH . . . G 3 17.022 -38.516 -0.071 1 53.96 ? N3 SAH 887 A 1 
HETATM 26 C C4 SAH . . . G 3 17.055 -38.734 1.233 1 54.68 ? C4 SAH 887 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#