data_1L9W # _model_server_result.job_id cAfz4D3rbyms3007pI-uSQ _model_server_result.datetime_utc '2024-11-25 03:03:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1l9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":303}' # _entry.id 1L9W # _exptl.entry_id 1L9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 172.159 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-AMINO-4,5-DIHYDROXY-CYCLOHEX-1-ENECARBOXYLATE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 93.61 _cell.angle_gamma 90 _cell.entry_id 1L9W _cell.length_a 42.61 _cell.length_b 158.56 _cell.length_c 85.89 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1L9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA,PQS dimeric 2 author_and_software_defined_assembly 1 PISA,PQS dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I,J 1 1 C,D,G,H,K,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 170 A LYS 170 1_555 E C3 DHS . A DHS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.966 ? covale ? covale2 B NZ LYS 170 B LYS 170 1_555 F C3 DHS . B DHS 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? covale ? covale3 C NZ LYS 170 C LYS 170 1_555 G C3 DHS . C DHS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? covale ? covale4 D NZ LYS 170 D LYS 170 1_555 H C3 DHS . D DHS 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.353 ? # _chem_comp.formula 'C7 H10 N O4 -1' _chem_comp.formula_weight 172.159 _chem_comp.id DHS _chem_comp.mon_nstd_flag . _chem_comp.name 3-AMINO-4,5-DIHYDROXY-CYCLOHEX-1-ENECARBOXYLATE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C3 DHS sing 70 n n N HN1 DHS sing 71 n n N HN2 DHS sing 72 n n C1 C6 DHS sing 73 n n C1 C7 DHS sing 74 n n C1 C2 DHS doub 75 n n C3 C4 DHS sing 76 n n C3 C2 DHS sing 77 n n C3 H3 DHS sing 78 n n C4 C5 DHS sing 79 n n C4 O2 DHS sing 80 n n C4 H4 DHS sing 81 n n C5 C6 DHS sing 82 n n C5 O3 DHS sing 83 n n C5 H5 DHS sing 84 n n C6 H61 DHS sing 85 n n C6 H62 DHS sing 86 n n C7 O4 DHS sing 87 n n C7 O5 DHS doub 88 n n C2 H2 DHS sing 89 n n O2 HO2 DHS sing 90 n n O3 HO3 DHS sing 91 n n # _atom_sites.entry_id 1L9W _atom_sites.fract_transf_matrix[1][1] 0.023469 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00148 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006307 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011666 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 DHS A 1 301 301 DHS DHQ . F 2 DHS B 1 302 302 DHS DHQ . G 2 DHS C 1 303 303 DHS DHQ . H 2 DHS D 1 304 304 DHS DHQ . I 3 HOH A 1 302 4 HOH HOH . I 3 HOH A 2 303 5 HOH HOH . I 3 HOH A 3 304 8 HOH HOH . I 3 HOH A 4 305 10 HOH HOH . I 3 HOH A 5 306 11 HOH HOH . I 3 HOH A 6 307 15 HOH HOH . I 3 HOH A 7 308 16 HOH HOH . I 3 HOH A 8 309 17 HOH HOH . I 3 HOH A 9 310 18 HOH HOH . I 3 HOH A 10 311 30 HOH HOH . I 3 HOH A 11 312 31 HOH HOH . I 3 HOH A 12 313 34 HOH HOH . I 3 HOH A 13 314 37 HOH HOH . I 3 HOH A 14 315 43 HOH HOH . I 3 HOH A 15 316 48 HOH HOH . I 3 HOH A 16 317 50 HOH HOH . I 3 HOH A 17 318 58 HOH HOH . I 3 HOH A 18 319 60 HOH HOH . I 3 HOH A 19 320 61 HOH HOH . I 3 HOH A 20 321 66 HOH HOH . I 3 HOH A 21 322 69 HOH HOH . I 3 HOH A 22 323 70 HOH HOH . I 3 HOH A 23 324 72 HOH HOH . I 3 HOH A 24 325 78 HOH HOH . I 3 HOH A 25 326 81 HOH HOH . I 3 HOH A 26 327 86 HOH HOH . I 3 HOH A 27 328 91 HOH HOH . I 3 HOH A 28 329 98 HOH HOH . I 3 HOH A 29 330 99 HOH HOH . I 3 HOH A 30 331 105 HOH HOH . I 3 HOH A 31 332 106 HOH HOH . I 3 HOH A 32 333 124 HOH HOH . I 3 HOH A 33 334 125 HOH HOH . I 3 HOH A 34 335 127 HOH HOH . I 3 HOH A 35 336 128 HOH HOH . I 3 HOH A 36 337 134 HOH HOH . I 3 HOH A 37 338 136 HOH HOH . I 3 HOH A 38 339 146 HOH HOH . I 3 HOH A 39 340 156 HOH HOH . I 3 HOH A 40 341 160 HOH HOH . I 3 HOH A 41 342 168 HOH HOH . I 3 HOH A 42 343 169 HOH HOH . I 3 HOH A 43 344 185 HOH HOH . I 3 HOH A 44 345 189 HOH HOH . I 3 HOH A 45 346 192 HOH HOH . I 3 HOH A 46 347 195 HOH HOH . I 3 HOH A 47 348 196 HOH HOH . I 3 HOH A 48 349 199 HOH HOH . I 3 HOH A 49 350 201 HOH HOH . J 3 HOH B 1 303 1 HOH HOH . J 3 HOH B 2 304 3 HOH HOH . J 3 HOH B 3 305 6 HOH HOH . J 3 HOH B 4 306 7 HOH HOH . J 3 HOH B 5 307 9 HOH HOH . J 3 HOH B 6 308 12 HOH HOH . J 3 HOH B 7 309 13 HOH HOH . J 3 HOH B 8 310 19 HOH HOH . J 3 HOH B 9 311 21 HOH HOH . J 3 HOH B 10 312 22 HOH HOH . J 3 HOH B 11 313 23 HOH HOH . J 3 HOH B 12 314 29 HOH HOH . J 3 HOH B 13 315 35 HOH HOH . J 3 HOH B 14 316 38 HOH HOH . J 3 HOH B 15 317 45 HOH HOH . J 3 HOH B 16 318 47 HOH HOH . J 3 HOH B 17 319 57 HOH HOH . J 3 HOH B 18 320 62 HOH HOH . J 3 HOH B 19 321 63 HOH HOH . J 3 HOH B 20 322 64 HOH HOH . J 3 HOH B 21 323 67 HOH HOH . J 3 HOH B 22 324 71 HOH HOH . J 3 HOH B 23 325 76 HOH HOH . J 3 HOH B 24 326 80 HOH HOH . J 3 HOH B 25 327 85 HOH HOH . J 3 HOH B 26 328 88 HOH HOH . J 3 HOH B 27 329 94 HOH HOH . J 3 HOH B 28 330 97 HOH HOH . J 3 HOH B 29 331 102 HOH HOH . J 3 HOH B 30 332 104 HOH HOH . J 3 HOH B 31 333 107 HOH HOH . J 3 HOH B 32 334 110 HOH HOH . J 3 HOH B 33 335 112 HOH HOH . J 3 HOH B 34 336 122 HOH HOH . J 3 HOH B 35 337 130 HOH HOH . J 3 HOH B 36 338 131 HOH HOH . J 3 HOH B 37 339 137 HOH HOH . J 3 HOH B 38 340 140 HOH HOH . J 3 HOH B 39 341 143 HOH HOH . J 3 HOH B 40 342 148 HOH HOH . J 3 HOH B 41 343 155 HOH HOH . J 3 HOH B 42 344 159 HOH HOH . J 3 HOH B 43 345 163 HOH HOH . J 3 HOH B 44 346 165 HOH HOH . J 3 HOH B 45 347 171 HOH HOH . J 3 HOH B 46 348 173 HOH HOH . J 3 HOH B 47 349 176 HOH HOH . J 3 HOH B 48 350 177 HOH HOH . J 3 HOH B 49 351 184 HOH HOH . J 3 HOH B 50 352 187 HOH HOH . J 3 HOH B 51 353 194 HOH HOH . J 3 HOH B 52 354 198 HOH HOH . J 3 HOH B 53 355 203 HOH HOH . J 3 HOH B 54 356 207 HOH HOH . K 3 HOH C 1 304 33 HOH HOH . K 3 HOH C 2 305 36 HOH HOH . K 3 HOH C 3 306 39 HOH HOH . K 3 HOH C 4 307 40 HOH HOH . K 3 HOH C 5 308 42 HOH HOH . K 3 HOH C 6 309 44 HOH HOH . K 3 HOH C 7 310 51 HOH HOH . K 3 HOH C 8 311 53 HOH HOH . K 3 HOH C 9 312 59 HOH HOH . K 3 HOH C 10 313 65 HOH HOH . K 3 HOH C 11 314 68 HOH HOH . K 3 HOH C 12 315 73 HOH HOH . K 3 HOH C 13 316 75 HOH HOH . K 3 HOH C 14 317 79 HOH HOH . K 3 HOH C 15 318 84 HOH HOH . K 3 HOH C 16 319 89 HOH HOH . K 3 HOH C 17 320 95 HOH HOH . K 3 HOH C 18 321 96 HOH HOH . K 3 HOH C 19 322 100 HOH HOH . K 3 HOH C 20 323 111 HOH HOH . K 3 HOH C 21 324 113 HOH HOH . K 3 HOH C 22 325 115 HOH HOH . K 3 HOH C 23 326 116 HOH HOH . K 3 HOH C 24 327 117 HOH HOH . K 3 HOH C 25 328 119 HOH HOH . K 3 HOH C 26 329 145 HOH HOH . K 3 HOH C 27 330 147 HOH HOH . K 3 HOH C 28 331 152 HOH HOH . K 3 HOH C 29 332 153 HOH HOH . K 3 HOH C 30 333 154 HOH HOH . K 3 HOH C 31 334 157 HOH HOH . K 3 HOH C 32 335 161 HOH HOH . K 3 HOH C 33 336 164 HOH HOH . K 3 HOH C 34 337 172 HOH HOH . K 3 HOH C 35 338 174 HOH HOH . K 3 HOH C 36 339 175 HOH HOH . K 3 HOH C 37 340 178 HOH HOH . K 3 HOH C 38 341 179 HOH HOH . K 3 HOH C 39 342 188 HOH HOH . K 3 HOH C 40 343 190 HOH HOH . K 3 HOH C 41 344 197 HOH HOH . K 3 HOH C 42 345 200 HOH HOH . K 3 HOH C 43 346 204 HOH HOH . K 3 HOH C 44 347 206 HOH HOH . L 3 HOH D 1 305 2 HOH HOH . L 3 HOH D 2 306 14 HOH HOH . L 3 HOH D 3 307 20 HOH HOH . L 3 HOH D 4 308 24 HOH HOH . L 3 HOH D 5 309 25 HOH HOH . L 3 HOH D 6 310 26 HOH HOH . L 3 HOH D 7 311 27 HOH HOH . L 3 HOH D 8 312 28 HOH HOH . L 3 HOH D 9 313 32 HOH HOH . L 3 HOH D 10 314 41 HOH HOH . L 3 HOH D 11 315 46 HOH HOH . L 3 HOH D 12 316 49 HOH HOH . L 3 HOH D 13 317 52 HOH HOH . L 3 HOH D 14 318 54 HOH HOH . L 3 HOH D 15 319 55 HOH HOH . L 3 HOH D 16 320 56 HOH HOH . L 3 HOH D 17 321 74 HOH HOH . L 3 HOH D 18 322 77 HOH HOH . L 3 HOH D 19 323 82 HOH HOH . L 3 HOH D 20 324 83 HOH HOH . L 3 HOH D 21 325 87 HOH HOH . L 3 HOH D 22 326 90 HOH HOH . L 3 HOH D 23 327 92 HOH HOH . L 3 HOH D 24 328 93 HOH HOH . L 3 HOH D 25 329 101 HOH HOH . L 3 HOH D 26 330 103 HOH HOH . L 3 HOH D 27 331 108 HOH HOH . L 3 HOH D 28 332 109 HOH HOH . L 3 HOH D 29 333 114 HOH HOH . L 3 HOH D 30 334 118 HOH HOH . L 3 HOH D 31 335 120 HOH HOH . L 3 HOH D 32 336 121 HOH HOH . L 3 HOH D 33 337 123 HOH HOH . L 3 HOH D 34 338 126 HOH HOH . L 3 HOH D 35 339 129 HOH HOH . L 3 HOH D 36 340 132 HOH HOH . L 3 HOH D 37 341 133 HOH HOH . L 3 HOH D 38 342 135 HOH HOH . L 3 HOH D 39 343 138 HOH HOH . L 3 HOH D 40 344 139 HOH HOH . L 3 HOH D 41 345 141 HOH HOH . L 3 HOH D 42 346 142 HOH HOH . L 3 HOH D 43 347 144 HOH HOH . L 3 HOH D 44 348 149 HOH HOH . L 3 HOH D 45 349 150 HOH HOH . L 3 HOH D 46 350 151 HOH HOH . L 3 HOH D 47 351 158 HOH HOH . L 3 HOH D 48 352 162 HOH HOH . L 3 HOH D 49 353 166 HOH HOH . L 3 HOH D 50 354 167 HOH HOH . L 3 HOH D 51 355 170 HOH HOH . L 3 HOH D 52 356 180 HOH HOH . L 3 HOH D 53 357 181 HOH HOH . L 3 HOH D 54 358 182 HOH HOH . L 3 HOH D 55 359 183 HOH HOH . L 3 HOH D 56 360 186 HOH HOH . L 3 HOH D 57 361 191 HOH HOH . L 3 HOH D 58 362 193 HOH HOH . L 3 HOH D 59 363 202 HOH HOH . L 3 HOH D 60 364 205 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DHS . . . G 2 6.429 113.802 44.917 1 32.16 ? C1 DHS 303 C 1 HETATM 2 C C3 DHS . . . G 2 6.659 115.505 43.396 1 31.12 ? C3 DHS 303 C 1 HETATM 3 C C4 DHS . . . G 2 7.623 116.396 44.212 1 33.7 ? C4 DHS 303 C 1 HETATM 4 C C5 DHS . . . G 2 8.248 115.529 45.348 1 32.49 ? C5 DHS 303 C 1 HETATM 5 C C6 DHS . . . G 2 7.156 114.742 45.977 1 32.65 ? C6 DHS 303 C 1 HETATM 6 C C7 DHS . . . G 2 6.32 112.394 45.486 1 31.99 ? C7 DHS 303 C 1 HETATM 7 C C2 DHS . . . G 2 7.162 114.036 43.785 1 27.3 ? C2 DHS 303 C 1 HETATM 8 O O2 DHS . . . G 2 8.984 116.675 43.745 1 33.38 ? O2 DHS 303 C 1 HETATM 9 O O3 DHS . . . G 2 9.26 116.442 45.882 1 30.09 ? O3 DHS 303 C 1 HETATM 10 O O4 DHS . . . G 2 5.273 111.738 45.755 1 33.35 ? O4 DHS 303 C 1 HETATM 11 O O5 DHS . . . G 2 7.423 111.787 45.479 1 29.41 ? O5 DHS 303 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #