data_1LB2 # _model_server_result.job_id DlWzY2FA5NHTUnWZ5VNJlA _model_server_result.datetime_utc '2025-01-28 06:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lb2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":679}' # _entry.id 1LB2 # _exptl.entry_id 1LB2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 329.206 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LB2 _cell.length_a 175.97 _cell.length_b 175.97 _cell.length_c 158.02 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LB2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_555 -x+y,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 A N3 DC 1 K DC 33 1_555 B N1 DG 24 J DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 K DC 33 1_555 B O6 DG 24 J DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 K DC 33 1_555 B N2 DG 24 J DG 33 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N3 DT 2 K DT 32 1_555 B N1 DA 23 J DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A O4 DT 2 K DT 32 1_555 B N6 DA 23 J DA 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A N3 DT 3 K DT 31 1_555 B N1 DA 22 J DA 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A O4 DT 3 K DT 31 1_555 B N6 DA 22 J DA 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N3 DT 4 K DT 30 1_555 B N1 DA 21 J DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O4 DT 4 K DT 30 1_555 B N6 DA 21 J DA 30 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N3 DT 5 K DT 29 1_555 B N1 DA 20 J DA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O4 DT 5 K DT 29 1_555 B N6 DA 20 J DA 29 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N3 DT 6 K DT 28 1_555 B N1 DA 19 J DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A O4 DT 6 K DT 28 1_555 B N6 DA 19 J DA 28 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N3 DT 7 K DT 27 1_555 B N1 DA 18 J DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A O4 DT 7 K DT 27 1_555 B N6 DA 18 J DA 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N3 DC 8 K DC 26 1_555 B N1 DG 17 J DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N4 DC 8 K DC 26 1_555 B O6 DG 17 J DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O2 DC 8 K DC 26 1_555 B N2 DG 17 J DG 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DC 9 K DC 25 1_555 B N1 DG 16 J DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A N4 DC 9 K DC 25 1_555 B O6 DG 16 J DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A O2 DC 9 K DC 25 1_555 B N2 DG 16 J DG 25 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N3 DT 10 K DT 24 1_555 B N1 DA 15 J DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O4 DT 10 K DT 24 1_555 B N6 DA 15 J DA 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DA 11 K DA 23 1_555 B N3 DT 14 J DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N6 DA 11 K DA 23 1_555 B O4 DT 14 J DT 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A N1 DA 12 K DA 22 1_555 B N3 DT 13 J DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N6 DA 12 K DA 22 1_555 B O4 DT 13 J DT 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N1 DA 13 K DA 21 1_555 B N3 DT 12 J DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N6 DA 13 K DA 21 1_555 B O4 DT 12 J DT 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DA 14 K DA 20 1_555 B N3 DT 11 J DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N6 DA 14 K DA 20 1_555 B O4 DT 11 J DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A N3 DT 15 K DT 19 1_555 B N1 DA 10 J DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 A O4 DT 15 K DT 19 1_555 B N6 DA 10 J DA 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 A N1 DG 16 K DG 18 1_555 B N3 DC 9 J DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N2 DG 16 K DG 18 1_555 B O2 DC 9 J DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A O6 DG 16 K DG 18 1_555 B N4 DC 9 J DC 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A N3 DT 17 K DT 17 1_555 B N1 DA 8 J DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A O4 DT 17 K DT 17 1_555 B N6 DA 8 J DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N1 DG 18 K DG 16 1_555 B N3 DC 7 J DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A N2 DG 18 K DG 16 1_555 B O2 DC 7 J DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 A O6 DG 18 K DG 16 1_555 B N4 DC 7 J DC 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog42 A N1 DA 19 K DA 15 1_555 B N3 DT 6 J DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog43 A N6 DA 19 K DA 15 1_555 B O4 DT 6 J DT 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DT-DA PAIR' hydrog44 A N3 DT 20 K DT 14 1_555 B N1 DA 5 J DA 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C10 H12 N5 O6 P' _chem_comp.formula_weight 329.206 _chem_comp.id CMP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'CYCLIC AMP;CAMP' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P CMP doub 70 n n P O2P CMP sing 71 n n P O5' CMP sing 72 n n P O3' CMP sing 73 n n O2P HOP2 CMP sing 74 n n O5' C5' CMP sing 75 n n C5' C4' CMP sing 76 n n C5' "H5'1" CMP sing 77 n n C5' "H5'2" CMP sing 78 n n C4' O4' CMP sing 79 n n C4' C3' CMP sing 80 n n C4' H4' CMP sing 81 n n O4' C1' CMP sing 82 n n C3' O3' CMP sing 83 n n C3' C2' CMP sing 84 n n C3' H3' CMP sing 85 n n C2' O2' CMP sing 86 n n C2' C1' CMP sing 87 n n C2' H2' CMP sing 88 n n O2' HO2' CMP sing 89 n n C1' N9 CMP sing 90 n n C1' H1' CMP sing 91 n n N9 C8 CMP sing 92 n y N9 C4 CMP sing 93 n y C8 N7 CMP doub 94 n y C8 H8 CMP sing 95 n n N7 C5 CMP sing 96 n y C5 C6 CMP sing 97 n y C5 C4 CMP doub 98 n y C6 N6 CMP sing 99 n n C6 N1 CMP doub 100 n y N6 HN61 CMP sing 101 n n N6 HN62 CMP sing 102 n n N1 C2 CMP sing 103 n y C2 N3 CMP doub 104 n y C2 H2 CMP sing 105 n n N3 C4 CMP sing 106 n y # _atom_sites.entry_id 1LB2 _atom_sites.fract_transf_matrix[1][1] 0.005683 _atom_sites.fract_transf_matrix[1][2] 0.003281 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006562 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006328 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 CMP A 1 679 679 CMP CMP . G 6 HOH K 1 34 20 HOH HOH . H 6 HOH J 1 34 1 HOH HOH . H 6 HOH J 2 35 5 HOH HOH . H 6 HOH J 3 36 12 HOH HOH . H 6 HOH J 4 37 14 HOH HOH . H 6 HOH J 5 38 22 HOH HOH . H 6 HOH J 6 39 30 HOH HOH . I 6 HOH A 1 680 2 HOH HOH . I 6 HOH A 2 681 3 HOH HOH . I 6 HOH A 3 682 6 HOH HOH . I 6 HOH A 4 683 7 HOH HOH . I 6 HOH A 5 684 8 HOH HOH . I 6 HOH A 6 685 9 HOH HOH . I 6 HOH A 7 686 10 HOH HOH . I 6 HOH A 8 687 13 HOH HOH . I 6 HOH A 9 688 17 HOH HOH . I 6 HOH A 10 689 18 HOH HOH . I 6 HOH A 11 690 19 HOH HOH . I 6 HOH A 12 691 21 HOH HOH . I 6 HOH A 13 692 23 HOH HOH . I 6 HOH A 14 693 24 HOH HOH . I 6 HOH A 15 694 25 HOH HOH . I 6 HOH A 16 695 27 HOH HOH . I 6 HOH A 17 696 29 HOH HOH . I 6 HOH A 18 697 31 HOH HOH . I 6 HOH A 19 698 33 HOH HOH . J 6 HOH B 1 4 4 HOH HOH . J 6 HOH B 2 11 11 HOH HOH . J 6 HOH B 3 15 15 HOH HOH . J 6 HOH B 4 26 26 HOH HOH . K 6 HOH E 1 16 16 HOH HOH . K 6 HOH E 2 34 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P CMP . . . F 5 0.516 89.279 11.211 1 50.1 ? P CMP 679 A 1 HETATM 2 O O1P CMP . . . F 5 1.748 89.85 10.557 1 43.5 ? O1P CMP 679 A 1 HETATM 3 O O2P CMP . . . F 5 0.626 88.001 11.99 1 45.03 ? O2P CMP 679 A 1 HETATM 4 O O5' CMP . . . F 5 -0.097 90.375 12.22 1 49.4 ? O5' CMP 679 A 1 HETATM 5 C C5' CMP . . . F 5 -0.927 91.433 11.747 1 42.66 ? C5' CMP 679 A 1 HETATM 6 C C4' CMP . . . F 5 -1.942 90.859 10.822 1 46.12 ? C4' CMP 679 A 1 HETATM 7 O O4' CMP . . . F 5 -2.768 91.878 10.214 1 42.95 ? O4' CMP 679 A 1 HETATM 8 C C3' CMP . . . F 5 -1.282 90.246 9.613 1 42 ? C3' CMP 679 A 1 HETATM 9 O O3' CMP . . . F 5 -0.616 89.097 10.073 1 47.14 ? O3' CMP 679 A 1 HETATM 10 C C2' CMP . . . F 5 -2.485 90.069 8.697 1 35.8 ? C2' CMP 679 A 1 HETATM 11 O O2' CMP . . . F 5 -3.355 89.022 9.118 1 34.15 ? O2' CMP 679 A 1 HETATM 12 C C1' CMP . . . F 5 -3.18 91.422 8.921 1 40.45 ? C1' CMP 679 A 1 HETATM 13 N N9 CMP . . . F 5 -2.715 92.388 7.934 1 35.77 ? N9 CMP 679 A 1 HETATM 14 C C8 CMP . . . F 5 -1.498 93.05 7.916 1 40.72 ? C8 CMP 679 A 1 HETATM 15 N N7 CMP . . . F 5 -1.328 93.821 6.858 1 48.24 ? N7 CMP 679 A 1 HETATM 16 C C5 CMP . . . F 5 -2.512 93.667 6.142 1 45.16 ? C5 CMP 679 A 1 HETATM 17 C C6 CMP . . . F 5 -2.953 94.215 4.921 1 41.32 ? C6 CMP 679 A 1 HETATM 18 N N6 CMP . . . F 5 -2.198 95.033 4.162 1 46.74 ? N6 CMP 679 A 1 HETATM 19 N N1 CMP . . . F 5 -4.206 93.88 4.495 1 43.22 ? N1 CMP 679 A 1 HETATM 20 C C2 CMP . . . F 5 -4.943 93.033 5.255 1 48.44 ? C2 CMP 679 A 1 HETATM 21 N N3 CMP . . . F 5 -4.624 92.439 6.413 1 43.15 ? N3 CMP 679 A 1 HETATM 22 C C4 CMP . . . F 5 -3.386 92.801 6.804 1 37.83 ? C4 CMP 679 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 22 #