data_1LBH # _model_server_result.job_id bVPUntnrlf7t5zP8cnIV3A _model_server_result.datetime_utc '2024-10-18 15:22:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lbh # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 1LBH # _exptl.entry_id 1LBH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.301 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-methylethyl 1-thio-beta-D-galactopyranoside' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LBH _cell.length_a 141.2 _cell.length_b 75.1 _cell.length_c 149.2 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LBH _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C9 H18 O5 S' _chem_comp.formula_weight 238.301 _chem_comp.id IPT _chem_comp.mon_nstd_flag . _chem_comp.name '1-methylethyl 1-thio-beta-D-galactopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'ISOPROPYL-1-BETA-D-THIOGALACTOSIDE;1-(ISOPROPYLTHIO)-BETA-GALACTOPYRANSIDE;1-methylethyl 1-thio-beta-D-galactoside;1-methylethyl 1-thio-D-galactoside;1-methylethyl 1-thio-galactoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IPT sing 171 n n C1 O5 IPT sing 172 n n C1 S1 IPT sing 173 n n C1 H1 IPT sing 174 n n C2 O2 IPT sing 175 n n C2 C3 IPT sing 176 n n C2 H2 IPT sing 177 n n O2 HO2 IPT sing 178 n n C3 O3 IPT sing 179 n n C3 C4 IPT sing 180 n n C3 H3 IPT sing 181 n n O3 HO3 IPT sing 182 n n C4 O4 IPT sing 183 n n C4 C5 IPT sing 184 n n C4 H4 IPT sing 185 n n O4 HO4 IPT sing 186 n n C5 O5 IPT sing 187 n n C5 C6 IPT sing 188 n n C5 H5 IPT sing 189 n n C6 O6 IPT sing 190 n n C6 H61 IPT sing 191 n n C6 H62 IPT sing 192 n n O6 HO6 IPT sing 193 n n S1 C1' IPT sing 194 n n C1' C2' IPT sing 195 n n C1' C3' IPT sing 196 n n C1' H1' IPT sing 197 n n C2' "H2'1" IPT sing 198 n n C2' "H2'2" IPT sing 199 n n C2' "H2'3" IPT sing 200 n n C3' "H3'1" IPT sing 201 n n C3' "H3'2" IPT sing 202 n n C3' "H3'3" IPT sing 203 n n # _pdbx_chem_comp_identifier.comp_id IPT _pdbx_chem_comp_identifier.identifier isopropyl-1-b-D-thiogalactoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1LBH _atom_sites.fract_transf_matrix[1][1] 0.007082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013316 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006702 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IPT A 1 400 400 IPT IPT . F 2 IPT B 1 400 400 IPT IPT . G 2 IPT C 1 400 400 IPT IPT . H 2 IPT D 1 400 400 IPT IPT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IPT . . . E 2 35.086 6.698 -10.441 1 8.41 ? C1 IPT 400 A 1 HETATM 2 C C2 IPT . . . E 2 33.621 6.296 -10.101 1 5.92 ? C2 IPT 400 A 1 HETATM 3 O O2 IPT . . . E 2 32.744 7.329 -9.589 1 2 ? O2 IPT 400 A 1 HETATM 4 C C3 IPT . . . E 2 33.784 5.373 -9.007 1 4.56 ? C3 IPT 400 A 1 HETATM 5 O O3 IPT . . . E 2 32.481 4.941 -9.104 1 2.52 ? O3 IPT 400 A 1 HETATM 6 C C4 IPT . . . E 2 34.931 4.288 -9.16 1 4.26 ? C4 IPT 400 A 1 HETATM 7 O O4 IPT . . . E 2 34.839 3.829 -10.468 1 8.57 ? O4 IPT 400 A 1 HETATM 8 C C5 IPT . . . E 2 36.249 4.812 -9.106 1 2.13 ? C5 IPT 400 A 1 HETATM 9 O O5 IPT . . . E 2 36.193 5.654 -10.286 1 4.87 ? O5 IPT 400 A 1 HETATM 10 C C6 IPT . . . E 2 37.269 3.674 -9.191 1 2 ? C6 IPT 400 A 1 HETATM 11 O O6 IPT . . . E 2 36.971 2.578 -9.976 1 2 ? O6 IPT 400 A 1 HETATM 12 S S1 IPT . . . E 2 35.013 7.576 -11.596 1 16.88 ? S1 IPT 400 A 1 HETATM 13 C C1' IPT . . . E 2 35.608 7.147 -12.863 1 17.43 ? C1' IPT 400 A 1 HETATM 14 C C2' IPT . . . E 2 35.464 5.623 -13.375 1 19.12 ? C2' IPT 400 A 1 HETATM 15 C C3' IPT . . . E 2 37.138 7.576 -13.149 1 17.28 ? C3' IPT 400 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 15 #