data_1LCA # _model_server_result.job_id CzGA7zKaLq85MnbO0YsODA _model_server_result.datetime_utc '2024-11-27 02:59:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lca # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":318}' # _entry.id 1LCA # _exptl.entry_id 1LCA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 477.469 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LCA _cell.length_a 78.7 _cell.length_b 78.7 _cell.length_c 230.1 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCA _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 11_554 -x+y,y,-z-1/2 -1 0 0 0 1 0 0 0 -1 0 0 -115.05 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H23 N5 O6' _chem_comp.formula_weight 477.469 _chem_comp.id CB3 _chem_comp.mon_nstd_flag . _chem_comp.name '10-PROPARGYL-5,8-DIDEAZAFOLIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 CB3 sing 70 n y N1 C8A CB3 sing 71 n y N1 HN1 CB3 sing 72 n n C2 NA2 CB3 sing 73 n n C2 N3 CB3 doub 74 n y NA2 HN21 CB3 sing 75 n n NA2 HN22 CB3 sing 76 n n N3 C4 CB3 sing 77 n y C4 O4 CB3 doub 78 n n C4 C4A CB3 sing 79 n y C4A C5 CB3 doub 80 n y C4A C8A CB3 sing 81 n y C5 C6 CB3 sing 82 n y C5 H5 CB3 sing 83 n n C6 C7 CB3 doub 84 n y C6 C9 CB3 sing 85 n n C7 C8 CB3 sing 86 n y C7 H7 CB3 sing 87 n n C8 C8A CB3 doub 88 n y C8 H8 CB3 sing 89 n n C9 N10 CB3 sing 90 n n C9 H91 CB3 sing 91 n n C9 H92 CB3 sing 92 n n N10 C14 CB3 sing 93 n n N10 CP1 CB3 sing 94 n n C11 C12 CB3 doub 95 n y C11 C16 CB3 sing 96 n y C11 C CB3 sing 97 n n C12 C13 CB3 sing 98 n y C12 H12 CB3 sing 99 n n C13 C14 CB3 doub 100 n y C13 H13 CB3 sing 101 n n C14 C15 CB3 sing 102 n y C15 C16 CB3 doub 103 n y C15 H15 CB3 sing 104 n n C16 H16 CB3 sing 105 n n C O CB3 doub 106 n n C N CB3 sing 107 n n N CA CB3 sing 108 n n N HN CB3 sing 109 n n CA CB CB3 sing 110 n n CA CT CB3 sing 111 n n CA HA CB3 sing 112 n n CB CG CB3 sing 113 n n CB HB1 CB3 sing 114 n n CB HB2 CB3 sing 115 n n CG CD CB3 sing 116 n n CG HG1 CB3 sing 117 n n CG HG2 CB3 sing 118 n n CD OE1 CB3 doub 119 n n CD OE2 CB3 sing 120 n n OE2 HOE2 CB3 sing 121 n n CT O1 CB3 doub 122 n n CT O2 CB3 sing 123 n n O2 HO2 CB3 sing 124 n n CP1 CP2 CB3 sing 125 n n CP1 HP11 CB3 sing 126 n n CP1 HP12 CB3 sing 127 n n CP2 CP3 CB3 trip 128 n n CP3 HP3 CB3 sing 129 n n # _atom_sites.entry_id 1LCA _atom_sites.fract_transf_matrix[1][1] 0.012706 _atom_sites.fract_transf_matrix[1][2] 0.007336 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004346 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UMP A 1 317 317 UMP UMP . C 3 CB3 A 1 318 318 CB3 CB3 . D 4 HOH A 1 319 319 HOH HOH . D 4 HOH A 2 320 320 HOH HOH . D 4 HOH A 3 321 321 HOH HOH . D 4 HOH A 4 322 322 HOH HOH . D 4 HOH A 5 323 323 HOH HOH . D 4 HOH A 6 324 324 HOH HOH . D 4 HOH A 7 325 325 HOH HOH . D 4 HOH A 8 326 326 HOH HOH . D 4 HOH A 9 327 327 HOH HOH . D 4 HOH A 10 328 328 HOH HOH . D 4 HOH A 11 329 329 HOH HOH . D 4 HOH A 12 330 330 HOH HOH . D 4 HOH A 13 331 331 HOH HOH . D 4 HOH A 14 332 332 HOH HOH . D 4 HOH A 15 333 333 HOH HOH . D 4 HOH A 16 334 334 HOH HOH . D 4 HOH A 17 335 335 HOH HOH . D 4 HOH A 18 336 336 HOH HOH . D 4 HOH A 19 337 337 HOH HOH . D 4 HOH A 20 338 338 HOH HOH . D 4 HOH A 21 339 339 HOH HOH . D 4 HOH A 22 340 340 HOH HOH . D 4 HOH A 23 341 341 HOH HOH . D 4 HOH A 24 342 342 HOH HOH . D 4 HOH A 25 343 343 HOH HOH . D 4 HOH A 26 344 344 HOH HOH . D 4 HOH A 27 345 345 HOH HOH . D 4 HOH A 28 346 346 HOH HOH . D 4 HOH A 29 347 347 HOH HOH . D 4 HOH A 30 348 348 HOH HOH . D 4 HOH A 31 349 349 HOH HOH . D 4 HOH A 32 350 350 HOH HOH . D 4 HOH A 33 351 351 HOH HOH . D 4 HOH A 34 352 352 HOH HOH . D 4 HOH A 35 353 353 HOH HOH . D 4 HOH A 36 354 354 HOH HOH . D 4 HOH A 37 355 355 HOH HOH . D 4 HOH A 38 356 356 HOH HOH . D 4 HOH A 39 357 357 HOH HOH . D 4 HOH A 40 358 358 HOH HOH . D 4 HOH A 41 359 359 HOH HOH . D 4 HOH A 42 360 360 HOH HOH . D 4 HOH A 43 361 361 HOH HOH . D 4 HOH A 44 362 362 HOH HOH . D 4 HOH A 45 363 363 HOH HOH . D 4 HOH A 46 364 364 HOH HOH . D 4 HOH A 47 365 365 HOH HOH . D 4 HOH A 48 366 366 HOH HOH . D 4 HOH A 49 367 367 HOH HOH . D 4 HOH A 50 368 368 HOH HOH . D 4 HOH A 51 369 369 HOH HOH . D 4 HOH A 52 370 370 HOH HOH . D 4 HOH A 53 371 371 HOH HOH . D 4 HOH A 54 372 372 HOH HOH . D 4 HOH A 55 373 373 HOH HOH . D 4 HOH A 56 374 374 HOH HOH . D 4 HOH A 57 375 375 HOH HOH . D 4 HOH A 58 376 376 HOH HOH . D 4 HOH A 59 377 377 HOH HOH . D 4 HOH A 60 378 378 HOH HOH . D 4 HOH A 61 379 379 HOH HOH . D 4 HOH A 62 380 380 HOH HOH . D 4 HOH A 63 381 381 HOH HOH . D 4 HOH A 64 382 382 HOH HOH . D 4 HOH A 65 383 383 HOH HOH . D 4 HOH A 66 384 384 HOH HOH . D 4 HOH A 67 385 385 HOH HOH . D 4 HOH A 68 386 386 HOH HOH . D 4 HOH A 69 387 387 HOH HOH . D 4 HOH A 70 388 388 HOH HOH . D 4 HOH A 71 389 389 HOH HOH . D 4 HOH A 72 390 390 HOH HOH . D 4 HOH A 73 391 391 HOH HOH . D 4 HOH A 74 392 392 HOH HOH . D 4 HOH A 75 393 393 HOH HOH . D 4 HOH A 76 394 394 HOH HOH . D 4 HOH A 77 395 395 HOH HOH . D 4 HOH A 78 396 396 HOH HOH . D 4 HOH A 79 397 397 HOH HOH . D 4 HOH A 80 398 398 HOH HOH . D 4 HOH A 81 399 399 HOH HOH . D 4 HOH A 82 400 400 HOH HOH . D 4 HOH A 83 401 401 HOH HOH . D 4 HOH A 84 402 402 HOH HOH . D 4 HOH A 85 403 403 HOH HOH . D 4 HOH A 86 404 404 HOH HOH . D 4 HOH A 87 405 405 HOH HOH . D 4 HOH A 88 406 406 HOH HOH . D 4 HOH A 89 407 407 HOH HOH . D 4 HOH A 90 408 408 HOH HOH . D 4 HOH A 91 409 409 HOH HOH . D 4 HOH A 92 410 410 HOH HOH . D 4 HOH A 93 411 411 HOH HOH . D 4 HOH A 94 412 412 HOH HOH . D 4 HOH A 95 413 413 HOH HOH . D 4 HOH A 96 414 414 HOH HOH . D 4 HOH A 97 415 415 HOH HOH . D 4 HOH A 98 416 416 HOH HOH . D 4 HOH A 99 417 417 HOH HOH . D 4 HOH A 100 418 418 HOH HOH . D 4 HOH A 101 419 419 HOH HOH . D 4 HOH A 102 420 420 HOH HOH . D 4 HOH A 103 421 421 HOH HOH . D 4 HOH A 104 422 422 HOH HOH . D 4 HOH A 105 423 423 HOH HOH . D 4 HOH A 106 424 424 HOH HOH . D 4 HOH A 107 425 425 HOH HOH . D 4 HOH A 108 426 426 HOH HOH . D 4 HOH A 109 427 427 HOH HOH . D 4 HOH A 110 428 428 HOH HOH . D 4 HOH A 111 429 429 HOH HOH . D 4 HOH A 112 430 430 HOH HOH . D 4 HOH A 113 431 431 HOH HOH . D 4 HOH A 114 432 432 HOH HOH . D 4 HOH A 115 433 433 HOH HOH . D 4 HOH A 116 434 434 HOH HOH . D 4 HOH A 117 435 435 HOH HOH . D 4 HOH A 118 436 436 HOH HOH . D 4 HOH A 119 437 437 HOH HOH . D 4 HOH A 120 438 438 HOH HOH . D 4 HOH A 121 439 439 HOH HOH . D 4 HOH A 122 440 440 HOH HOH . D 4 HOH A 123 441 441 HOH HOH . D 4 HOH A 124 442 442 HOH HOH . D 4 HOH A 125 443 443 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 CB3 . . . C 3 18.659 48.373 -52.861 1 25.02 ? N1 CB3 318 A 1 HETATM 2 C C2 CB3 . . . C 3 18.621 47.011 -52.986 1 25.02 ? C2 CB3 318 A 1 HETATM 3 N NA2 CB3 . . . C 3 18.96 46.428 -54.137 1 25.02 ? NA2 CB3 318 A 1 HETATM 4 N N3 CB3 . . . C 3 18.215 46.223 -51.943 1 25.02 ? N3 CB3 318 A 1 HETATM 5 C C4 CB3 . . . C 3 17.954 46.74 -50.706 1 25.02 ? C4 CB3 318 A 1 HETATM 6 O O4 CB3 . . . C 3 17.757 45.877 -49.624 1 25.02 ? O4 CB3 318 A 1 HETATM 7 C C4A CB3 . . . C 3 17.919 48.147 -50.552 1 25.02 ? C4A CB3 318 A 1 HETATM 8 C C5 CB3 . . . C 3 17.498 48.752 -49.344 1 25.02 ? C5 CB3 318 A 1 HETATM 9 C C6 CB3 . . . C 3 17.362 50.167 -49.225 1 25.02 ? C6 CB3 318 A 1 HETATM 10 C C7 CB3 . . . C 3 17.69 50.933 -50.384 1 25.02 ? C7 CB3 318 A 1 HETATM 11 C C8 CB3 . . . C 3 18.137 50.357 -51.608 1 25.02 ? C8 CB3 318 A 1 HETATM 12 C C8A CB3 . . . C 3 18.254 48.952 -51.698 1 25.02 ? C8A CB3 318 A 1 HETATM 13 C C9 CB3 . . . C 3 16.881 50.895 -47.945 1 25.02 ? C9 CB3 318 A 1 HETATM 14 N N10 CB3 . . . C 3 16.685 50.07 -46.692 1 25.02 ? N10 CB3 318 A 1 HETATM 15 C C11 CB3 . . . C 3 19.973 48.023 -45.206 1 25.02 ? C11 CB3 318 A 1 HETATM 16 C C12 CB3 . . . C 3 18.841 47.283 -45.628 1 25.02 ? C12 CB3 318 A 1 HETATM 17 C C13 CB3 . . . C 3 17.74 47.954 -46.141 1 25.02 ? C13 CB3 318 A 1 HETATM 18 C C14 CB3 . . . C 3 17.762 49.375 -46.237 1 25.02 ? C14 CB3 318 A 1 HETATM 19 C C15 CB3 . . . C 3 18.914 50.088 -45.87 1 25.02 ? C15 CB3 318 A 1 HETATM 20 C C16 CB3 . . . C 3 20.008 49.426 -45.361 1 25.02 ? C16 CB3 318 A 1 HETATM 21 C C CB3 . . . C 3 21.111 47.416 -44.492 1 38.46 ? C CB3 318 A 1 HETATM 22 O O CB3 . . . C 3 22.237 47.976 -44.418 1 25.02 ? O CB3 318 A 1 HETATM 23 N N CB3 . . . C 3 20.877 46.325 -43.728 1 38.46 ? N CB3 318 A 1 HETATM 24 C CA CB3 . . . C 3 20.736 44.907 -44.238 1 38.46 ? CA CB3 318 A 1 HETATM 25 C CB CB3 . . . C 3 21.726 43.931 -43.481 1 25.02 ? CB CB3 318 A 1 HETATM 26 C CG CB3 . . . C 3 22.452 42.708 -44.077 1 25.02 ? CG CB3 318 A 1 HETATM 27 C CD CB3 . . . C 3 23.939 42.681 -43.644 1 25.02 ? CD CB3 318 A 1 HETATM 28 O OE1 CB3 . . . C 3 24.411 41.737 -42.977 1 25.02 ? OE1 CB3 318 A 1 HETATM 29 O OE2 CB3 . . . C 3 24.635 43.652 -43.995 1 25.02 ? OE2 CB3 318 A 1 HETATM 30 C CT CB3 . . . C 3 19.276 44.489 -43.927 1 25.02 ? CT CB3 318 A 1 HETATM 31 O O1 CB3 . . . C 3 18.641 45.199 -43.119 1 25.02 ? O1 CB3 318 A 1 HETATM 32 O O2 CB3 . . . C 3 18.815 43.489 -44.507 1 25.02 ? O2 CB3 318 A 1 HETATM 33 C CP1 CB3 . . . C 3 15.354 49.808 -46.042 1 25.02 ? CP1 CB3 318 A 1 HETATM 34 C CP2 CB3 . . . C 3 15.396 48.522 -45.269 1 25.02 ? CP2 CB3 318 A 1 HETATM 35 C CP3 CB3 . . . C 3 15.642 47.469 -44.726 1 25.02 ? CP3 CB3 318 A 1 HETATM 36 H HN21 CB3 . . . C 3 19.639 47.038 -54.641 1 15 ? HN21 CB3 318 A 1 HETATM 37 H HN22 CB3 . . . C 3 18.112 46.332 -54.726 1 15 ? HN22 CB3 318 A 1 HETATM 38 H HN CB3 . . . C 3 20.312 46.476 -42.942 1 15 ? HN CB3 318 A 1 HETATM 39 H HP3 CB3 . . . C 3 16.078 46.674 -44.173 1 15 ? HP3 CB3 318 A 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 39 #