data_1LCO # _model_server_result.job_id Upt-XoIszzuFT00sJad_ZQ _model_server_result.datetime_utc '2024-10-12 14:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":570}' # _entry.id 1LCO # _exptl.entry_id 1LCO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1LCO _cell.length_a 164.5 _cell.length_b 164.5 _cell.length_c 114 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 y,x,-z -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 43 A HIS 43 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc2 A NE2 HIS 66 A HIS 66 1_555 C FE HEM . A HEM 560 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 1LCO _atom_sites.fract_transf_matrix[1][1] 0.006079 _atom_sites.fract_transf_matrix[1][2] 0.00351 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 560 560 HEM HEM . D 3 FMN A 1 570 570 FMN FMN . E 4 PPY A 1 580 580 PPY PPY . F 3 FMN B 1 570 570 FMN FMN . G 4 PPY B 1 580 580 PPY PPY . H 5 HOH A 1 601 601 HOH HOH . H 5 HOH A 2 602 602 HOH HOH . H 5 HOH A 3 603 603 HOH HOH . H 5 HOH A 4 604 604 HOH HOH . H 5 HOH A 5 605 605 HOH HOH . H 5 HOH A 6 606 606 HOH HOH . H 5 HOH A 7 607 607 HOH HOH . H 5 HOH A 8 608 608 HOH HOH . H 5 HOH A 9 609 609 HOH HOH . H 5 HOH A 10 610 610 HOH HOH . H 5 HOH A 11 611 611 HOH HOH . H 5 HOH A 12 612 612 HOH HOH . H 5 HOH A 13 614 614 HOH HOH . H 5 HOH A 14 615 615 HOH HOH . H 5 HOH A 15 616 616 HOH HOH . H 5 HOH A 16 617 617 HOH HOH . H 5 HOH A 17 618 618 HOH HOH . H 5 HOH A 18 619 619 HOH HOH . H 5 HOH A 19 620 620 HOH HOH . H 5 HOH A 20 621 621 HOH HOH . H 5 HOH A 21 623 623 HOH HOH . H 5 HOH A 22 624 624 HOH HOH . H 5 HOH A 23 625 625 HOH HOH . H 5 HOH A 24 626 626 HOH HOH . H 5 HOH A 25 630 630 HOH HOH . H 5 HOH A 26 631 631 HOH HOH . H 5 HOH A 27 632 632 HOH HOH . H 5 HOH A 28 633 633 HOH HOH . H 5 HOH A 29 634 634 HOH HOH . H 5 HOH A 30 635 635 HOH HOH . H 5 HOH A 31 636 636 HOH HOH . H 5 HOH A 32 637 637 HOH HOH . H 5 HOH A 33 638 638 HOH HOH . H 5 HOH A 34 639 639 HOH HOH . H 5 HOH A 35 640 640 HOH HOH . H 5 HOH A 36 641 641 HOH HOH . H 5 HOH A 37 642 642 HOH HOH . H 5 HOH A 38 643 643 HOH HOH . H 5 HOH A 39 644 644 HOH HOH . H 5 HOH A 40 645 645 HOH HOH . H 5 HOH A 41 646 646 HOH HOH . H 5 HOH A 42 647 647 HOH HOH . H 5 HOH A 43 648 648 HOH HOH . H 5 HOH A 44 649 649 HOH HOH . H 5 HOH A 45 650 650 HOH HOH . H 5 HOH A 46 651 651 HOH HOH . H 5 HOH A 47 652 652 HOH HOH . H 5 HOH A 48 653 653 HOH HOH . H 5 HOH A 49 654 654 HOH HOH . H 5 HOH A 50 656 656 HOH HOH . H 5 HOH A 51 657 657 HOH HOH . H 5 HOH A 52 658 658 HOH HOH . H 5 HOH A 53 660 660 HOH HOH . H 5 HOH A 54 661 661 HOH HOH . H 5 HOH A 55 662 662 HOH HOH . H 5 HOH A 56 663 663 HOH HOH . H 5 HOH A 57 664 664 HOH HOH . H 5 HOH A 58 665 665 HOH HOH . H 5 HOH A 59 666 666 HOH HOH . H 5 HOH A 60 667 667 HOH HOH . H 5 HOH A 61 668 668 HOH HOH . H 5 HOH A 62 669 669 HOH HOH . H 5 HOH A 63 670 670 HOH HOH . H 5 HOH A 64 671 671 HOH HOH . H 5 HOH A 65 672 672 HOH HOH . H 5 HOH A 66 673 673 HOH HOH . H 5 HOH A 67 674 674 HOH HOH . H 5 HOH A 68 675 675 HOH HOH . H 5 HOH A 69 676 676 HOH HOH . H 5 HOH A 70 677 677 HOH HOH . H 5 HOH A 71 678 678 HOH HOH . H 5 HOH A 72 679 679 HOH HOH . H 5 HOH A 73 680 680 HOH HOH . H 5 HOH A 74 681 681 HOH HOH . H 5 HOH A 75 682 682 HOH HOH . H 5 HOH A 76 683 683 HOH HOH . H 5 HOH A 77 684 684 HOH HOH . H 5 HOH A 78 685 685 HOH HOH . H 5 HOH A 79 686 686 HOH HOH . H 5 HOH A 80 687 687 HOH HOH . H 5 HOH A 81 688 688 HOH HOH . H 5 HOH A 82 689 689 HOH HOH . H 5 HOH A 83 690 690 HOH HOH . H 5 HOH A 84 691 691 HOH HOH . H 5 HOH A 85 692 692 HOH HOH . H 5 HOH A 86 693 693 HOH HOH . H 5 HOH A 87 694 694 HOH HOH . H 5 HOH A 88 695 695 HOH HOH . H 5 HOH A 89 696 696 HOH HOH . H 5 HOH A 90 697 697 HOH HOH . H 5 HOH A 91 698 698 HOH HOH . H 5 HOH A 92 699 699 HOH HOH . H 5 HOH A 93 700 700 HOH HOH . H 5 HOH A 94 701 701 HOH HOH . H 5 HOH A 95 702 702 HOH HOH . H 5 HOH A 96 703 703 HOH HOH . H 5 HOH A 97 704 704 HOH HOH . H 5 HOH A 98 705 705 HOH HOH . H 5 HOH A 99 706 706 HOH HOH . H 5 HOH A 100 707 707 HOH HOH . H 5 HOH A 101 708 708 HOH HOH . H 5 HOH A 102 709 709 HOH HOH . H 5 HOH A 103 710 710 HOH HOH . H 5 HOH A 104 711 711 HOH HOH . H 5 HOH A 105 713 713 HOH HOH . H 5 HOH A 106 714 714 HOH HOH . H 5 HOH A 107 715 715 HOH HOH . H 5 HOH A 108 716 716 HOH HOH . H 5 HOH A 109 717 717 HOH HOH . H 5 HOH A 110 718 718 HOH HOH . H 5 HOH A 111 721 721 HOH HOH . H 5 HOH A 112 722 722 HOH HOH . H 5 HOH A 113 723 723 HOH HOH . H 5 HOH A 114 724 724 HOH HOH . H 5 HOH A 115 725 725 HOH HOH . H 5 HOH A 116 726 726 HOH HOH . H 5 HOH A 117 727 727 HOH HOH . H 5 HOH A 118 728 728 HOH HOH . H 5 HOH A 119 729 729 HOH HOH . H 5 HOH A 120 730 730 HOH HOH . H 5 HOH A 121 732 732 HOH HOH . H 5 HOH A 122 733 733 HOH HOH . H 5 HOH A 123 734 734 HOH HOH . H 5 HOH A 124 735 735 HOH HOH . H 5 HOH A 125 736 736 HOH HOH . H 5 HOH A 126 737 737 HOH HOH . H 5 HOH A 127 738 738 HOH HOH . H 5 HOH A 128 739 739 HOH HOH . H 5 HOH A 129 740 740 HOH HOH . H 5 HOH A 130 741 741 HOH HOH . H 5 HOH A 131 742 742 HOH HOH . H 5 HOH A 132 743 743 HOH HOH . H 5 HOH A 133 744 744 HOH HOH . H 5 HOH A 134 745 745 HOH HOH . H 5 HOH A 135 746 746 HOH HOH . H 5 HOH A 136 747 747 HOH HOH . H 5 HOH A 137 748 748 HOH HOH . H 5 HOH A 138 749 749 HOH HOH . H 5 HOH A 139 750 750 HOH HOH . H 5 HOH A 140 752 752 HOH HOH . H 5 HOH A 141 753 753 HOH HOH . H 5 HOH A 142 754 754 HOH HOH . H 5 HOH A 143 756 756 HOH HOH . H 5 HOH A 144 757 757 HOH HOH . H 5 HOH A 145 758 758 HOH HOH . H 5 HOH A 146 759 759 HOH HOH . H 5 HOH A 147 760 760 HOH HOH . H 5 HOH A 148 761 761 HOH HOH . H 5 HOH A 149 762 762 HOH HOH . H 5 HOH A 150 763 763 HOH HOH . H 5 HOH A 151 764 764 HOH HOH . H 5 HOH A 152 765 765 HOH HOH . I 5 HOH B 1 613 613 HOH HOH . I 5 HOH B 2 622 622 HOH HOH . I 5 HOH B 3 627 627 HOH HOH . I 5 HOH B 4 628 628 HOH HOH . I 5 HOH B 5 629 629 HOH HOH . I 5 HOH B 6 655 655 HOH HOH . I 5 HOH B 7 659 659 HOH HOH . I 5 HOH B 8 712 712 HOH HOH . I 5 HOH B 9 719 719 HOH HOH . I 5 HOH B 10 720 720 HOH HOH . I 5 HOH B 11 731 731 HOH HOH . I 5 HOH B 12 751 751 HOH HOH . I 5 HOH B 13 755 755 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 3 69.54 57.355 1.616 1 7.64 ? N1 FMN 570 A 1 HETATM 2 C C2 FMN . . . D 3 70.85 57.041 1.974 1 10.93 ? C2 FMN 570 A 1 HETATM 3 O O2 FMN . . . D 3 71.735 57.886 2.067 1 13.38 ? O2 FMN 570 A 1 HETATM 4 N N3 FMN . . . D 3 71.121 55.736 2.223 1 2.1 ? N3 FMN 570 A 1 HETATM 5 C C4 FMN . . . D 3 70.198 54.754 2.144 1 5.27 ? C4 FMN 570 A 1 HETATM 6 O O4 FMN . . . D 3 70.607 53.602 2.227 1 7.27 ? O4 FMN 570 A 1 HETATM 7 C C4A FMN . . . D 3 68.841 55.198 1.915 1 6.81 ? C4A FMN 570 A 1 HETATM 8 N N5 FMN . . . D 3 67.933 54.195 2.006 1 4.49 ? N5 FMN 570 A 1 HETATM 9 C C5A FMN . . . D 3 66.692 54.46 1.571 1 5.21 ? C5A FMN 570 A 1 HETATM 10 C C6 FMN . . . D 3 65.828 53.43 1.656 1 3.68 ? C6 FMN 570 A 1 HETATM 11 C C7 FMN . . . D 3 64.589 53.586 1.161 1 3.87 ? C7 FMN 570 A 1 HETATM 12 C C7M FMN . . . D 3 63.831 52.286 1.158 1 2.02 ? C7M FMN 570 A 1 HETATM 13 C C8 FMN . . . D 3 64.137 54.85 0.702 1 2.05 ? C8 FMN 570 A 1 HETATM 14 C C8M FMN . . . D 3 62.753 55.161 0.139 1 2.42 ? C8M FMN 570 A 1 HETATM 15 C C9 FMN . . . D 3 64.987 55.902 0.747 1 2 ? C9 FMN 570 A 1 HETATM 16 C C9A FMN . . . D 3 66.303 55.695 1.097 1 5.89 ? C9A FMN 570 A 1 HETATM 17 N N10 FMN . . . D 3 67.227 56.698 0.955 1 6.36 ? N10 FMN 570 A 1 HETATM 18 C C10 FMN . . . D 3 68.48 56.464 1.485 1 7.25 ? C10 FMN 570 A 1 HETATM 19 C C1' FMN . . . D 3 66.834 57.918 0.61 1 4.78 ? C1' FMN 570 A 1 HETATM 20 C C2' FMN . . . D 3 67.593 58.612 -0.519 1 3.05 ? C2' FMN 570 A 1 HETATM 21 O O2' FMN . . . D 3 68.259 57.891 -1.518 1 3.58 ? O2' FMN 570 A 1 HETATM 22 C C3' FMN . . . D 3 66.808 59.598 -1.216 1 4.08 ? C3' FMN 570 A 1 HETATM 23 O O3' FMN . . . D 3 66.834 60.858 -0.586 1 8.16 ? O3' FMN 570 A 1 HETATM 24 C C4' FMN . . . D 3 65.462 59.183 -1.752 1 7.65 ? C4' FMN 570 A 1 HETATM 25 O O4' FMN . . . D 3 64.963 57.885 -1.432 1 2.21 ? O4' FMN 570 A 1 HETATM 26 C C5' FMN . . . D 3 64.541 60.365 -2.035 1 2.36 ? C5' FMN 570 A 1 HETATM 27 O O5' FMN . . . D 3 63.185 60.004 -2.06 1 8.6 ? O5' FMN 570 A 1 HETATM 28 P P FMN . . . D 3 62.197 59.509 -3.23 1 16.06 ? P FMN 570 A 1 HETATM 29 O O1P FMN . . . D 3 62.029 58.06 -2.94 1 10.77 ? O1P FMN 570 A 1 HETATM 30 O O2P FMN . . . D 3 62.932 59.817 -4.474 1 11.34 ? O2P FMN 570 A 1 HETATM 31 O O3P FMN . . . D 3 61.01 60.344 -2.94 1 10.6 ? O3P FMN 570 A 1 HETATM 32 H HN3 FMN . . . D 3 72.014 55.526 2.636 1 0 ? HN3 FMN 570 A 1 HETATM 33 H HO2' FMN . . . D 3 68.626 57.127 -1.073 1 0 ? HO2' FMN 570 A 1 HETATM 34 H HO3' FMN . . . D 3 67.761 61.094 -0.481 1 0 ? HO3' FMN 570 A 1 HETATM 35 H HO4' FMN . . . D 3 65.676 57.252 -1.581 1 0 ? HO4' FMN 570 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #