data_1LCU
#
_model_server_result.job_id            ZX39_BokVJbR6wPvYR_qsQ 
_model_server_result.datetime_utc      '2025-07-02 15:05:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1lcu 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":1411}' 
#
_entry.id    1LCU 
#
_exptl.entry_id    1LCU 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              421.55 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LATRUNCULIN A' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1LCU 
_cell.length_a            101.456 
_cell.length_b            103.029 
_cell.length_c            126.958 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1LCU 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 I N N 
? 5 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 370 A CYS 384 1_555 B SG CYS 370 B CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc1 A N VAL 26 A VAL 40 1_555 F CA CA . A CA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? 
metalc ? metalc2 A NE2 GLN 133 A GLN 147 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.278 ? 
metalc ? metalc3 H O1G ATP . A ATP 390 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? 
metalc ? metalc4 H O3G ATP . A ATP 390 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? 
metalc ? metalc5 H O2B ATP . A ATP 390 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
metalc ? metalc6 O O HOH . B HOH 5 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? 
metalc ? metalc7 O O HOH . B HOH 11 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? 
metalc ? metalc8 O O HOH . B HOH 21 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc9 L O2B ATP . B ATP 1390 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc10 L O3G ATP . B ATP 1390 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? 
#
_chem_comp.formula           'C22 H31 N O5 S' 
_chem_comp.formula_weight    421.55 
_chem_comp.id                LAR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LATRUNCULIN A' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S1 C19 LAR sing 222 n n 
S1 C20 LAR sing 223 n n 
N1 C18 LAR sing 224 n n 
N1 C20 LAR sing 225 n n 
N1 HN1 LAR sing 226 n n 
O1 C1 LAR doub 227 n n 
O2 C1 LAR sing 228 n n 
O2 C15 LAR sing 229 n n 
O3 C13 LAR sing 230 n n 
O3 C17 LAR sing 231 n n 
O4 C17 LAR sing 232 n n 
O4 HO4 LAR sing 233 n n 
O5 C20 LAR doub 234 n n 
C1 C2 LAR sing 235 n n 
C2 C3 LAR doub 236 z n 
C2 H21 LAR sing 237 n n 
C3 C4 LAR sing 238 n n 
C3 C21 LAR sing 239 n n 
C4 C5 LAR sing 240 n n 
C4 H41 LAR sing 241 n n 
C4 H42 LAR sing 242 n n 
C5 C6 LAR sing 243 n n 
C5 H51 LAR sing 244 n n 
C5 H52 LAR sing 245 n n 
C6 C7 LAR doub 246 e n 
C6 H61 LAR sing 247 n n 
C7 C8 LAR sing 248 n n 
C7 H71 LAR sing 249 n n 
C8 C9 LAR doub 250 z n 
C8 H81 LAR sing 251 n n 
C9 C10 LAR sing 252 n n 
C9 H91 LAR sing 253 n n 
C10 C11 LAR sing 254 n n 
C10 C22 LAR sing 255 n n 
C10 H101 LAR sing 256 n n 
C11 C12 LAR sing 257 n n 
C11 H111 LAR sing 258 n n 
C11 H112 LAR sing 259 n n 
C12 C13 LAR sing 260 n n 
C12 H121 LAR sing 261 n n 
C12 H122 LAR sing 262 n n 
C13 C14 LAR sing 263 n n 
C13 H131 LAR sing 264 n n 
C14 C15 LAR sing 265 n n 
C14 H141 LAR sing 266 n n 
C14 H142 LAR sing 267 n n 
C15 C16 LAR sing 268 n n 
C15 H151 LAR sing 269 n n 
C16 C17 LAR sing 270 n n 
C16 H161 LAR sing 271 n n 
C16 H162 LAR sing 272 n n 
C17 C18 LAR sing 273 n n 
C18 C19 LAR sing 274 n n 
C18 H181 LAR sing 275 n n 
C19 H191 LAR sing 276 n n 
C19 H192 LAR sing 277 n n 
C21 H211 LAR sing 278 n n 
C21 H212 LAR sing 279 n n 
C21 H213 LAR sing 280 n n 
C22 H221 LAR sing 281 n n 
C22 H222 LAR sing 282 n n 
C22 H223 LAR sing 283 n n 
#
_atom_sites.entry_id                     1LCU 
_atom_sites.fract_transf_matrix[1][1]    0.009856 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009706 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007877 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CA A 1 412 412 CA CA . 
D 2 CA A 1 503 3 CA CA . 
E 3 CL A 1 506 6 CL CL1 . 
F 2 CA A 1 508 8 CA CA . 
G 3 CL A 1 512 12 CL CL1 . 
H 4 ATP A 1 390 390 ATP ATP . 
I 5 LAR A 1 411 411 LAR LAR . 
J 2 CA B 1 1412 1412 CA CA . 
K 3 CL B 1 507 7 CL CL1 . 
L 4 ATP B 1 1390 1390 ATP ATP . 
M 5 LAR B 1 1411 1411 LAR LAR . 
N 6 HOH A 1 513 10 HOH HOH . 
N 6 HOH A 2 514 5 HOH HOH . 
N 6 HOH A 3 515 1 HOH HOH . 
N 6 HOH A 4 516 3 HOH HOH . 
N 6 HOH A 5 517 7 HOH HOH . 
N 6 HOH A 6 518 9 HOH HOH . 
N 6 HOH A 7 519 12 HOH HOH . 
N 6 HOH A 8 520 13 HOH HOH . 
N 6 HOH A 9 521 14 HOH HOH . 
N 6 HOH A 10 522 22 HOH HOH . 
N 6 HOH A 11 523 27 HOH HOH . 
N 6 HOH A 12 524 28 HOH HOH . 
N 6 HOH A 13 525 30 HOH HOH . 
N 6 HOH A 14 526 32 HOH HOH . 
N 6 HOH A 15 527 33 HOH HOH . 
N 6 HOH A 16 528 35 HOH HOH . 
N 6 HOH A 17 529 39 HOH HOH . 
N 6 HOH A 18 530 40 HOH HOH . 
N 6 HOH A 19 531 42 HOH HOH . 
N 6 HOH A 20 532 43 HOH HOH . 
N 6 HOH A 21 533 44 HOH HOH . 
N 6 HOH A 22 534 45 HOH HOH . 
N 6 HOH A 23 535 46 HOH HOH . 
N 6 HOH A 24 536 50 HOH HOH . 
N 6 HOH A 25 537 51 HOH HOH . 
N 6 HOH A 26 538 52 HOH HOH . 
N 6 HOH A 27 539 53 HOH HOH . 
N 6 HOH A 28 540 54 HOH HOH . 
N 6 HOH A 29 541 58 HOH HOH . 
N 6 HOH A 30 542 63 HOH HOH . 
N 6 HOH A 31 543 65 HOH HOH . 
N 6 HOH A 32 544 66 HOH HOH . 
N 6 HOH A 33 545 67 HOH HOH . 
N 6 HOH A 34 546 68 HOH HOH . 
N 6 HOH A 35 547 70 HOH HOH . 
N 6 HOH A 36 548 71 HOH HOH . 
N 6 HOH A 37 549 72 HOH HOH . 
N 6 HOH A 38 550 76 HOH HOH . 
N 6 HOH A 39 551 77 HOH HOH . 
N 6 HOH A 40 552 78 HOH HOH . 
N 6 HOH A 41 553 79 HOH HOH . 
O 6 HOH B 1 2 2 HOH HOH . 
O 6 HOH B 2 4 4 HOH HOH . 
O 6 HOH B 3 5 5 HOH HOH . 
O 6 HOH B 4 6 6 HOH HOH . 
O 6 HOH B 5 8 8 HOH HOH . 
O 6 HOH B 6 10 10 HOH HOH . 
O 6 HOH B 7 11 11 HOH HOH . 
O 6 HOH B 8 15 15 HOH HOH . 
O 6 HOH B 9 16 16 HOH HOH . 
O 6 HOH B 10 17 17 HOH HOH . 
O 6 HOH B 11 18 18 HOH HOH . 
O 6 HOH B 12 19 19 HOH HOH . 
O 6 HOH B 13 20 20 HOH HOH . 
O 6 HOH B 14 21 21 HOH HOH . 
O 6 HOH B 15 23 23 HOH HOH . 
O 6 HOH B 16 24 24 HOH HOH . 
O 6 HOH B 17 25 25 HOH HOH . 
O 6 HOH B 18 26 26 HOH HOH . 
O 6 HOH B 19 29 29 HOH HOH . 
O 6 HOH B 20 31 31 HOH HOH . 
O 6 HOH B 21 34 34 HOH HOH . 
O 6 HOH B 22 36 36 HOH HOH . 
O 6 HOH B 23 37 37 HOH HOH . 
O 6 HOH B 24 38 38 HOH HOH . 
O 6 HOH B 25 41 41 HOH HOH . 
O 6 HOH B 26 47 47 HOH HOH . 
O 6 HOH B 27 48 48 HOH HOH . 
O 6 HOH B 28 49 49 HOH HOH . 
O 6 HOH B 29 55 55 HOH HOH . 
O 6 HOH B 30 56 56 HOH HOH . 
O 6 HOH B 31 57 57 HOH HOH . 
O 6 HOH B 32 59 59 HOH HOH . 
O 6 HOH B 33 60 60 HOH HOH . 
O 6 HOH B 34 61 61 HOH HOH . 
O 6 HOH B 35 62 62 HOH HOH . 
O 6 HOH B 36 64 64 HOH HOH . 
O 6 HOH B 37 69 69 HOH HOH . 
O 6 HOH B 38 73 73 HOH HOH . 
O 6 HOH B 39 74 74 HOH HOH . 
O 6 HOH B 40 75 75 HOH HOH . 
O 6 HOH B 41 80 80 HOH HOH . 
O 6 HOH B 42 501 1 HOH HOH . 
O 6 HOH B 43 509 9 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S1 LAR . . . M 5 -9.981 90.126 12.723 1 36.57 ? S1 LAR 1411 B 1 
HETATM 2 N N1 LAR . . . M 5 -9.333 89.916 15.149 1 35.12 ? N1 LAR 1411 B 1 
HETATM 3 O O1 LAR . . . M 5 -12.96 90.092 18.912 1 31.31 ? O1 LAR 1411 B 1 
HETATM 4 O O2 LAR . . . M 5 -12.501 92.158 18.094 1 29.66 ? O2 LAR 1411 B 1 
HETATM 5 O O3 LAR . . . M 5 -9.682 93.342 16.127 1 31.56 ? O3 LAR 1411 B 1 
HETATM 6 O O4 LAR . . . M 5 -11.472 92.066 15.344 1 31.79 ? O4 LAR 1411 B 1 
HETATM 7 O O5 LAR . . . M 5 -9.917 87.935 14.196 1 39.4 ? O5 LAR 1411 B 1 
HETATM 8 C C1 LAR . . . M 5 -13.345 91.146 18.424 1 31.11 ? C1 LAR 1411 B 1 
HETATM 9 C C2 LAR . . . M 5 -14.765 91.442 18.153 1 32.56 ? C2 LAR 1411 B 1 
HETATM 10 C C3 LAR . . . M 5 -15.454 92.469 17.624 1 33.3 ? C3 LAR 1411 B 1 
HETATM 11 C C4 LAR . . . M 5 -14.84 93.73 17.107 1 32.16 ? C4 LAR 1411 B 1 
HETATM 12 C C5 LAR . . . M 5 -15.348 94.913 17.865 1 31.33 ? C5 LAR 1411 B 1 
HETATM 13 C C6 LAR . . . M 5 -14.537 96.146 17.645 1 31.6 ? C6 LAR 1411 B 1 
HETATM 14 C C7 LAR . . . M 5 -13.446 96.372 16.897 1 29.84 ? C7 LAR 1411 B 1 
HETATM 15 C C8 LAR . . . M 5 -12.808 97.647 16.842 1 29.98 ? C8 LAR 1411 B 1 
HETATM 16 C C9 LAR . . . M 5 -11.689 97.893 16.1 1 29.41 ? C9 LAR 1411 B 1 
HETATM 17 C C10 LAR . . . M 5 -10.965 96.878 15.234 1 28.93 ? C10 LAR 1411 B 1 
HETATM 18 C C11 LAR . . . M 5 -9.711 96.285 15.856 1 29.01 ? C11 LAR 1411 B 1 
HETATM 19 C C12 LAR . . . M 5 -9.899 95.549 17.171 1 30.83 ? C12 LAR 1411 B 1 
HETATM 20 C C13 LAR . . . M 5 -10.493 94.15 17.08 1 31.46 ? C13 LAR 1411 B 1 
HETATM 21 C C14 LAR . . . M 5 -10.515 93.449 18.445 1 31.06 ? C14 LAR 1411 B 1 
HETATM 22 C C15 LAR . . . M 5 -11.044 92.022 18.33 1 29.78 ? C15 LAR 1411 B 1 
HETATM 23 C C16 LAR . . . M 5 -10.354 91.231 17.238 1 30.95 ? C16 LAR 1411 B 1 
HETATM 24 C C17 LAR . . . M 5 -10.17 92.019 15.937 1 32.37 ? C17 LAR 1411 B 1 
HETATM 25 C C18 LAR . . . M 5 -9.184 91.398 14.968 1 33.23 ? C18 LAR 1411 B 1 
HETATM 26 C C19 LAR . . . M 5 -9.443 91.693 13.512 1 34.57 ? C19 LAR 1411 B 1 
HETATM 27 C C20 LAR . . . M 5 -9.726 89.131 14.19 1 36.51 ? C20 LAR 1411 B 1 
HETATM 28 C C21 LAR . . . M 5 -17.002 92.31 17.537 1 34.75 ? C21 LAR 1411 B 1 
HETATM 29 C C22 LAR . . . M 5 -10.65 97.596 13.84 1 29.4 ? C22 LAR 1411 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           29 
#