data_1LCU # _model_server_result.job_id FLa3O2RGKXxcSVYhNMQn3Q _model_server_result.datetime_utc '2024-11-16 01:32:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":411}' # _entry.id 1LCU # _exptl.entry_id 1LCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 421.55 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'LATRUNCULIN A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LCU _cell.length_a 101.456 _cell.length_b 103.029 _cell.length_c 126.958 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 I N N ? 5 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 370 A CYS 384 1_555 B SG CYS 370 B CYS 1384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A N VAL 26 A VAL 40 1_555 F CA CA . A CA 508 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.144 ? metalc ? metalc2 A NE2 GLN 133 A GLN 147 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.278 ? metalc ? metalc3 H O1G ATP . A ATP 390 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.843 ? metalc ? metalc4 H O3G ATP . A ATP 390 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.007 ? metalc ? metalc5 H O2B ATP . A ATP 390 1_555 C CA CA . A CA 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? metalc ? metalc6 O O HOH . B HOH 5 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.81 ? metalc ? metalc7 O O HOH . B HOH 11 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.726 ? metalc ? metalc8 O O HOH . B HOH 21 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc9 L O2B ATP . B ATP 1390 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc10 L O3G ATP . B ATP 1390 1_555 J CA CA . B CA 1412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? # _chem_comp.formula 'C22 H31 N O5 S' _chem_comp.formula_weight 421.55 _chem_comp.id LAR _chem_comp.mon_nstd_flag . _chem_comp.name 'LATRUNCULIN A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 4-(17-HYDROXY-5,12-DIMETHYL-3-OXO-2,16-DIOXABICYCLO[13.3.1]NONADECA-4,8,10-TRIEN-17-YL)-2-THIAZOLIDINONE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S1 C19 LAR sing 222 n n S1 C20 LAR sing 223 n n N1 C18 LAR sing 224 n n N1 C20 LAR sing 225 n n N1 HN1 LAR sing 226 n n O1 C1 LAR doub 227 n n O2 C1 LAR sing 228 n n O2 C15 LAR sing 229 n n O3 C13 LAR sing 230 n n O3 C17 LAR sing 231 n n O4 C17 LAR sing 232 n n O4 HO4 LAR sing 233 n n O5 C20 LAR doub 234 n n C1 C2 LAR sing 235 n n C2 C3 LAR doub 236 z n C2 H21 LAR sing 237 n n C3 C4 LAR sing 238 n n C3 C21 LAR sing 239 n n C4 C5 LAR sing 240 n n C4 H41 LAR sing 241 n n C4 H42 LAR sing 242 n n C5 C6 LAR sing 243 n n C5 H51 LAR sing 244 n n C5 H52 LAR sing 245 n n C6 C7 LAR doub 246 e n C6 H61 LAR sing 247 n n C7 C8 LAR sing 248 n n C7 H71 LAR sing 249 n n C8 C9 LAR doub 250 z n C8 H81 LAR sing 251 n n C9 C10 LAR sing 252 n n C9 H91 LAR sing 253 n n C10 C11 LAR sing 254 n n C10 C22 LAR sing 255 n n C10 H101 LAR sing 256 n n C11 C12 LAR sing 257 n n C11 H111 LAR sing 258 n n C11 H112 LAR sing 259 n n C12 C13 LAR sing 260 n n C12 H121 LAR sing 261 n n C12 H122 LAR sing 262 n n C13 C14 LAR sing 263 n n C13 H131 LAR sing 264 n n C14 C15 LAR sing 265 n n C14 H141 LAR sing 266 n n C14 H142 LAR sing 267 n n C15 C16 LAR sing 268 n n C15 H151 LAR sing 269 n n C16 C17 LAR sing 270 n n C16 H161 LAR sing 271 n n C16 H162 LAR sing 272 n n C17 C18 LAR sing 273 n n C18 C19 LAR sing 274 n n C18 H181 LAR sing 275 n n C19 H191 LAR sing 276 n n C19 H192 LAR sing 277 n n C21 H211 LAR sing 278 n n C21 H212 LAR sing 279 n n C21 H213 LAR sing 280 n n C22 H221 LAR sing 281 n n C22 H222 LAR sing 282 n n C22 H223 LAR sing 283 n n # _atom_sites.entry_id 1LCU _atom_sites.fract_transf_matrix[1][1] 0.009856 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009706 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 412 412 CA CA . D 2 CA A 1 503 3 CA CA . E 3 CL A 1 506 6 CL CL1 . F 2 CA A 1 508 8 CA CA . G 3 CL A 1 512 12 CL CL1 . H 4 ATP A 1 390 390 ATP ATP . I 5 LAR A 1 411 411 LAR LAR . J 2 CA B 1 1412 1412 CA CA . K 3 CL B 1 507 7 CL CL1 . L 4 ATP B 1 1390 1390 ATP ATP . M 5 LAR B 1 1411 1411 LAR LAR . N 6 HOH A 1 513 10 HOH HOH . N 6 HOH A 2 514 5 HOH HOH . N 6 HOH A 3 515 1 HOH HOH . N 6 HOH A 4 516 3 HOH HOH . N 6 HOH A 5 517 7 HOH HOH . N 6 HOH A 6 518 9 HOH HOH . N 6 HOH A 7 519 12 HOH HOH . N 6 HOH A 8 520 13 HOH HOH . N 6 HOH A 9 521 14 HOH HOH . N 6 HOH A 10 522 22 HOH HOH . N 6 HOH A 11 523 27 HOH HOH . N 6 HOH A 12 524 28 HOH HOH . N 6 HOH A 13 525 30 HOH HOH . N 6 HOH A 14 526 32 HOH HOH . N 6 HOH A 15 527 33 HOH HOH . N 6 HOH A 16 528 35 HOH HOH . N 6 HOH A 17 529 39 HOH HOH . N 6 HOH A 18 530 40 HOH HOH . N 6 HOH A 19 531 42 HOH HOH . N 6 HOH A 20 532 43 HOH HOH . N 6 HOH A 21 533 44 HOH HOH . N 6 HOH A 22 534 45 HOH HOH . N 6 HOH A 23 535 46 HOH HOH . N 6 HOH A 24 536 50 HOH HOH . N 6 HOH A 25 537 51 HOH HOH . N 6 HOH A 26 538 52 HOH HOH . N 6 HOH A 27 539 53 HOH HOH . N 6 HOH A 28 540 54 HOH HOH . N 6 HOH A 29 541 58 HOH HOH . N 6 HOH A 30 542 63 HOH HOH . N 6 HOH A 31 543 65 HOH HOH . N 6 HOH A 32 544 66 HOH HOH . N 6 HOH A 33 545 67 HOH HOH . N 6 HOH A 34 546 68 HOH HOH . N 6 HOH A 35 547 70 HOH HOH . N 6 HOH A 36 548 71 HOH HOH . N 6 HOH A 37 549 72 HOH HOH . N 6 HOH A 38 550 76 HOH HOH . N 6 HOH A 39 551 77 HOH HOH . N 6 HOH A 40 552 78 HOH HOH . N 6 HOH A 41 553 79 HOH HOH . O 6 HOH B 1 2 2 HOH HOH . O 6 HOH B 2 4 4 HOH HOH . O 6 HOH B 3 5 5 HOH HOH . O 6 HOH B 4 6 6 HOH HOH . O 6 HOH B 5 8 8 HOH HOH . O 6 HOH B 6 10 10 HOH HOH . O 6 HOH B 7 11 11 HOH HOH . O 6 HOH B 8 15 15 HOH HOH . O 6 HOH B 9 16 16 HOH HOH . O 6 HOH B 10 17 17 HOH HOH . O 6 HOH B 11 18 18 HOH HOH . O 6 HOH B 12 19 19 HOH HOH . O 6 HOH B 13 20 20 HOH HOH . O 6 HOH B 14 21 21 HOH HOH . O 6 HOH B 15 23 23 HOH HOH . O 6 HOH B 16 24 24 HOH HOH . O 6 HOH B 17 25 25 HOH HOH . O 6 HOH B 18 26 26 HOH HOH . O 6 HOH B 19 29 29 HOH HOH . O 6 HOH B 20 31 31 HOH HOH . O 6 HOH B 21 34 34 HOH HOH . O 6 HOH B 22 36 36 HOH HOH . O 6 HOH B 23 37 37 HOH HOH . O 6 HOH B 24 38 38 HOH HOH . O 6 HOH B 25 41 41 HOH HOH . O 6 HOH B 26 47 47 HOH HOH . O 6 HOH B 27 48 48 HOH HOH . O 6 HOH B 28 49 49 HOH HOH . O 6 HOH B 29 55 55 HOH HOH . O 6 HOH B 30 56 56 HOH HOH . O 6 HOH B 31 57 57 HOH HOH . O 6 HOH B 32 59 59 HOH HOH . O 6 HOH B 33 60 60 HOH HOH . O 6 HOH B 34 61 61 HOH HOH . O 6 HOH B 35 62 62 HOH HOH . O 6 HOH B 36 64 64 HOH HOH . O 6 HOH B 37 69 69 HOH HOH . O 6 HOH B 38 73 73 HOH HOH . O 6 HOH B 39 74 74 HOH HOH . O 6 HOH B 40 75 75 HOH HOH . O 6 HOH B 41 80 80 HOH HOH . O 6 HOH B 42 501 1 HOH HOH . O 6 HOH B 43 509 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S1 LAR . . . I 5 10.292 67.104 83.072 1 50.91 ? S1 LAR 411 A 1 HETATM 2 N N1 LAR . . . I 5 10.006 67.18 80.559 1 46.83 ? N1 LAR 411 A 1 HETATM 3 O O1 LAR . . . I 5 11.272 64.26 76.42 1 34.7 ? O1 LAR 411 A 1 HETATM 4 O O2 LAR . . . I 5 13.199 64.936 77.395 1 32.18 ? O2 LAR 411 A 1 HETATM 5 O O3 LAR . . . I 5 13.482 67.87 79.777 1 37.06 ? O3 LAR 411 A 1 HETATM 6 O O4 LAR . . . I 5 12.606 65.849 80.514 1 38.1 ? O4 LAR 411 A 1 HETATM 7 O O5 LAR . . . I 5 8.274 66.154 81.654 1 51.08 ? O5 LAR 411 A 1 HETATM 8 C C1 LAR . . . I 5 12.377 63.989 76.876 1 34.22 ? C1 LAR 411 A 1 HETATM 9 C C2 LAR . . . I 5 12.937 62.614 76.887 1 36.23 ? C2 LAR 411 A 1 HETATM 10 C C3 LAR . . . I 5 13.971 61.972 77.469 1 36.54 ? C3 LAR 411 A 1 HETATM 11 C C4 LAR . . . I 5 14.967 62.603 78.409 1 36.23 ? C4 LAR 411 A 1 HETATM 12 C C5 LAR . . . I 5 16.324 62.551 77.794 1 35.6 ? C5 LAR 411 A 1 HETATM 13 C C6 LAR . . . I 5 17.261 63.634 78.21 1 35.73 ? C6 LAR 411 A 1 HETATM 14 C C7 LAR . . . I 5 17.169 64.683 79.045 1 35.06 ? C7 LAR 411 A 1 HETATM 15 C C8 LAR . . . I 5 18.285 65.575 79.215 1 35.67 ? C8 LAR 411 A 1 HETATM 16 C C9 LAR . . . I 5 18.291 66.664 80.031 1 35.07 ? C9 LAR 411 A 1 HETATM 17 C C10 LAR . . . I 5 17.143 67.113 80.897 1 34.78 ? C10 LAR 411 A 1 HETATM 18 C C11 LAR . . . I 5 16.397 68.326 80.366 1 35.17 ? C11 LAR 411 A 1 HETATM 19 C C12 LAR . . . I 5 15.763 68.181 78.996 1 35.3 ? C12 LAR 411 A 1 HETATM 20 C C13 LAR . . . I 5 14.549 67.285 78.931 1 35.8 ? C13 LAR 411 A 1 HETATM 21 C C14 LAR . . . I 5 14.037 67.18 77.502 1 35.1 ? C14 LAR 411 A 1 HETATM 22 C C15 LAR . . . I 5 12.763 66.346 77.404 1 32.99 ? C15 LAR 411 A 1 HETATM 23 C C16 LAR . . . I 5 11.735 66.643 78.489 1 35.75 ? C16 LAR 411 A 1 HETATM 24 C C17 LAR . . . I 5 12.304 67.068 79.843 1 38.91 ? C17 LAR 411 A 1 HETATM 25 C C18 LAR . . . I 5 11.341 67.866 80.688 1 42.97 ? C18 LAR 411 A 1 HETATM 26 C C19 LAR . . . I 5 11.657 67.945 82.167 1 46.49 ? C19 LAR 411 A 1 HETATM 27 C C20 LAR . . . I 5 9.342 66.731 81.596 1 48.99 ? C20 LAR 411 A 1 HETATM 28 C C21 LAR . . . I 5 14.117 60.456 77.134 1 37.63 ? C21 LAR 411 A 1 HETATM 29 C C22 LAR . . . I 5 17.744 67.37 82.354 1 34.71 ? C22 LAR 411 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #