data_1LCV # _model_server_result.job_id emqwdEMKfsefO_uUmh1Ryw _model_server_result.datetime_utc '2024-12-02 16:26:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lcv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":2}' # _entry.id 1LCV # _exptl.entry_id 1LCV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 230.284 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NORBIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LCV _cell.length_a 47.29 _cell.length_b 95.32 _cell.length_c 105.29 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCV _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA tetrameric 4 author_and_software_defined_assembly 1 PQS octameric 8 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F 1 1,2 A,B,C,D,E,F 2 1,3,2,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 3 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 95.32 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 95.32 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C9 H14 N2 O3 S' _chem_comp.formula_weight 230.284 _chem_comp.id SNR _chem_comp.mon_nstd_flag . _chem_comp.name NORBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '4-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 N2 SNR sing 258 n n C1 N5 SNR sing 259 n n C1 O11 SNR doub 260 n n N2 C3 SNR sing 261 n n N2 HN2 SNR sing 262 n n C3 C4 SNR sing 263 n n C3 C8 SNR sing 264 n n C3 H3 SNR sing 265 n n C4 N5 SNR sing 266 n n C4 C6 SNR sing 267 n n C4 H4 SNR sing 268 n n N5 HN5 SNR sing 269 n n C6 S7 SNR sing 270 n n C6 C12 SNR sing 271 n n C6 H6 SNR sing 272 n n S7 C8 SNR sing 273 n n C8 H81 SNR sing 274 n n C8 H82 SNR sing 275 n n C12 C13 SNR sing 276 n n C12 H11 SNR sing 277 n n C12 H21 SNR sing 278 n n C13 C14 SNR sing 279 n n C13 H12 SNR sing 280 n n C13 H22 SNR sing 281 n n C14 C15 SNR sing 282 n n C14 H13 SNR sing 283 n n C14 H23 SNR sing 284 n n C15 O16 SNR sing 285 n n C15 O17 SNR doub 286 n n O16 H16 SNR sing 287 n n # _atom_sites.entry_id 1LCV _atom_sites.fract_transf_matrix[1][1] 0.021146 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010491 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009498 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SNR A 1 1 1 SNR SNR . D 2 SNR B 1 2 2 SNR SNR . E 3 HOH A 1 602 602 HOH WAT . E 3 HOH A 2 605 605 HOH WAT . E 3 HOH A 3 606 606 HOH WAT . E 3 HOH A 4 609 609 HOH WAT . E 3 HOH A 5 610 610 HOH WAT . E 3 HOH A 6 611 611 HOH WAT . E 3 HOH A 7 612 612 HOH WAT . E 3 HOH A 8 615 615 HOH WAT . E 3 HOH A 9 616 616 HOH WAT . E 3 HOH A 10 618 618 HOH WAT . E 3 HOH A 11 619 619 HOH WAT . E 3 HOH A 12 621 621 HOH WAT . E 3 HOH A 13 622 622 HOH WAT . E 3 HOH A 14 623 623 HOH WAT . E 3 HOH A 15 628 628 HOH WAT . E 3 HOH A 16 630 630 HOH WAT . E 3 HOH A 17 633 633 HOH WAT . E 3 HOH A 18 634 634 HOH WAT . E 3 HOH A 19 635 635 HOH WAT . E 3 HOH A 20 644 644 HOH WAT . E 3 HOH A 21 647 647 HOH WAT . E 3 HOH A 22 648 648 HOH WAT . E 3 HOH A 23 649 649 HOH WAT . E 3 HOH A 24 651 651 HOH WAT . E 3 HOH A 25 652 652 HOH WAT . E 3 HOH A 26 657 657 HOH WAT . E 3 HOH A 27 658 658 HOH WAT . E 3 HOH A 28 667 667 HOH WAT . E 3 HOH A 29 668 668 HOH WAT . E 3 HOH A 30 669 669 HOH WAT . E 3 HOH A 31 671 671 HOH WAT . E 3 HOH A 32 673 673 HOH WAT . E 3 HOH A 33 675 675 HOH WAT . E 3 HOH A 34 677 677 HOH WAT . E 3 HOH A 35 678 678 HOH WAT . E 3 HOH A 36 679 679 HOH WAT . E 3 HOH A 37 680 680 HOH WAT . E 3 HOH A 38 683 683 HOH WAT . E 3 HOH A 39 685 685 HOH WAT . E 3 HOH A 40 688 688 HOH WAT . E 3 HOH A 41 689 689 HOH WAT . E 3 HOH A 42 691 691 HOH WAT . E 3 HOH A 43 692 692 HOH WAT . E 3 HOH A 44 693 693 HOH WAT . E 3 HOH A 45 695 695 HOH WAT . F 3 HOH B 1 601 601 HOH WAT . F 3 HOH B 2 603 603 HOH WAT . F 3 HOH B 3 604 604 HOH WAT . F 3 HOH B 4 607 607 HOH WAT . F 3 HOH B 5 608 608 HOH WAT . F 3 HOH B 6 613 613 HOH WAT . F 3 HOH B 7 614 614 HOH WAT . F 3 HOH B 8 617 617 HOH WAT . F 3 HOH B 9 620 620 HOH WAT . F 3 HOH B 10 624 624 HOH WAT . F 3 HOH B 11 625 625 HOH WAT . F 3 HOH B 12 626 626 HOH WAT . F 3 HOH B 13 627 627 HOH WAT . F 3 HOH B 14 629 629 HOH WAT . F 3 HOH B 15 632 632 HOH WAT . F 3 HOH B 16 636 636 HOH WAT . F 3 HOH B 17 637 637 HOH WAT . F 3 HOH B 18 638 638 HOH WAT . F 3 HOH B 19 639 639 HOH WAT . F 3 HOH B 20 640 640 HOH WAT . F 3 HOH B 21 641 641 HOH WAT . F 3 HOH B 22 642 642 HOH WAT . F 3 HOH B 23 643 643 HOH WAT . F 3 HOH B 24 645 645 HOH WAT . F 3 HOH B 25 646 646 HOH WAT . F 3 HOH B 26 650 650 HOH WAT . F 3 HOH B 27 653 653 HOH WAT . F 3 HOH B 28 654 654 HOH WAT . F 3 HOH B 29 655 655 HOH WAT . F 3 HOH B 30 656 656 HOH WAT . F 3 HOH B 31 659 659 HOH WAT . F 3 HOH B 32 660 660 HOH WAT . F 3 HOH B 33 661 661 HOH WAT . F 3 HOH B 34 662 662 HOH WAT . F 3 HOH B 35 663 663 HOH WAT . F 3 HOH B 36 664 664 HOH WAT . F 3 HOH B 37 665 665 HOH WAT . F 3 HOH B 38 666 666 HOH WAT . F 3 HOH B 39 670 670 HOH WAT . F 3 HOH B 40 672 672 HOH WAT . F 3 HOH B 41 674 674 HOH WAT . F 3 HOH B 42 676 676 HOH WAT . F 3 HOH B 43 681 681 HOH WAT . F 3 HOH B 44 682 682 HOH WAT . F 3 HOH B 45 684 684 HOH WAT . F 3 HOH B 46 686 686 HOH WAT . F 3 HOH B 47 687 687 HOH WAT . F 3 HOH B 48 690 690 HOH WAT . F 3 HOH B 49 694 694 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SNR . . . D 2 11.354 16.171 5.346 1 12.66 ? C1 SNR 2 B 1 HETATM 2 N N2 SNR . . . D 2 10.236 16.718 4.841 1 13.24 ? N2 SNR 2 B 1 HETATM 3 C C3 SNR . . . D 2 10.572 17.709 3.829 1 13.62 ? C3 SNR 2 B 1 HETATM 4 C C4 SNR . . . D 2 12.117 17.689 3.778 1 13.78 ? C4 SNR 2 B 1 HETATM 5 N N5 SNR . . . D 2 12.455 16.682 4.783 1 13.4 ? N5 SNR 2 B 1 HETATM 6 C C6 SNR . . . D 2 12.619 19.166 4.047 1 14.44 ? C6 SNR 2 B 1 HETATM 7 S S7 SNR . . . D 2 11.394 19.767 5.244 1 14.08 ? S7 SNR 2 B 1 HETATM 8 C C8 SNR . . . D 2 10 19.096 4.27 1 13.97 ? C8 SNR 2 B 1 HETATM 9 O O11 SNR . . . D 2 11.363 15.308 6.22 1 12.73 ? O11 SNR 2 B 1 HETATM 10 C C12 SNR . . . D 2 14.11 19.329 4.477 1 15.15 ? C12 SNR 2 B 1 HETATM 11 C C13 SNR . . . D 2 14.779 20.596 3.982 1 17.85 ? C13 SNR 2 B 1 HETATM 12 C C14 SNR . . . D 2 16.221 20.74 4.412 1 19.38 ? C14 SNR 2 B 1 HETATM 13 C C15 SNR . . . D 2 16.73 22.023 3.837 1 21.3 ? C15 SNR 2 B 1 HETATM 14 O O16 SNR . . . D 2 16.638 23.053 4.482 1 22.41 ? O16 SNR 2 B 1 HETATM 15 O O17 SNR . . . D 2 17.272 22.053 2.598 1 24.62 ? O17 SNR 2 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 497 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #