data_1LCW # _model_server_result.job_id k9rLrG5uG-Fz8q2QM7JCtQ _model_server_result.datetime_utc '2024-11-28 12:49:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1lcw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 1LCW # _exptl.entry_id 1LCW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 258.337 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description HOMOBIOTIN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1LCW _cell.length_a 47.32 _cell.length_b 95.76 _cell.length_c 105.55 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1LCW _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H18 N2 O3 S' _chem_comp.formula_weight 258.337 _chem_comp.id SHM _chem_comp.mon_nstd_flag . _chem_comp.name HOMOBIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '6-(2-OXO-HEXAHYDRO-THIENO[3,4-D]IMIDAZOL-4-YL)-HEXANOIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 SHM sing 258 n n C1 N5 SHM sing 259 n n C1 C8 SHM sing 260 n n C1 H11 SHM sing 261 n n C2 N3 SHM sing 262 n n C2 C6 SHM sing 263 n n C2 H12 SHM sing 264 n n N3 C4 SHM sing 265 n n N3 HN3 SHM sing 266 n n C4 N5 SHM sing 267 n n C4 O17 SHM doub 268 n n N5 HN5 SHM sing 269 n n C6 S7 SHM sing 270 n n C6 C9 SHM sing 271 n n C6 H6 SHM sing 272 n n S7 C8 SHM sing 273 n n C8 H81 SHM sing 274 n n C8 H82 SHM sing 275 n n C9 C10 SHM sing 276 n n C9 H11A SHM sing 277 n n C9 H21 SHM sing 278 n n C10 C11 SHM sing 279 n n C10 H12A SHM sing 280 n n C10 H22 SHM sing 281 n n C11 C12 SHM sing 282 n n C11 H13 SHM sing 283 n n C11 H23 SHM sing 284 n n C12 C13 SHM sing 285 n n C12 H14 SHM sing 286 n n C12 H24 SHM sing 287 n n C13 C14 SHM sing 288 n n C13 H15 SHM sing 289 n n C13 H25 SHM sing 290 n n C14 O15 SHM doub 291 n n C14 O16 SHM sing 292 n n O16 H16 SHM sing 293 n n # _atom_sites.entry_id 1LCW _atom_sites.fract_transf_matrix[1][1] 0.021133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010443 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009474 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SHM A 1 401 401 SHM SHM . D 2 SHM B 1 402 402 SHM SHM . E 3 HOH A 1 501 501 HOH WAT . E 3 HOH A 2 502 502 HOH WAT . E 3 HOH A 3 503 503 HOH WAT . E 3 HOH A 4 504 504 HOH WAT . E 3 HOH A 5 505 505 HOH WAT . E 3 HOH A 6 509 509 HOH WAT . E 3 HOH A 7 513 513 HOH WAT . E 3 HOH A 8 514 514 HOH WAT . E 3 HOH A 9 516 516 HOH WAT . E 3 HOH A 10 517 517 HOH WAT . E 3 HOH A 11 519 519 HOH WAT . E 3 HOH A 12 520 520 HOH WAT . E 3 HOH A 13 521 521 HOH WAT . E 3 HOH A 14 523 523 HOH WAT . E 3 HOH A 15 527 527 HOH WAT . E 3 HOH A 16 529 529 HOH WAT . E 3 HOH A 17 531 531 HOH WAT . E 3 HOH A 18 532 532 HOH WAT . E 3 HOH A 19 534 534 HOH WAT . E 3 HOH A 20 536 536 HOH WAT . E 3 HOH A 21 537 537 HOH WAT . E 3 HOH A 22 539 539 HOH WAT . E 3 HOH A 23 542 542 HOH WAT . E 3 HOH A 24 552 552 HOH WAT . E 3 HOH A 25 554 554 HOH WAT . E 3 HOH A 26 557 557 HOH WAT . E 3 HOH A 27 558 558 HOH WAT . E 3 HOH A 28 559 559 HOH WAT . E 3 HOH A 29 561 561 HOH WAT . E 3 HOH A 30 564 564 HOH WAT . E 3 HOH A 31 565 565 HOH WAT . E 3 HOH A 32 567 567 HOH WAT . E 3 HOH A 33 568 568 HOH WAT . E 3 HOH A 34 570 570 HOH WAT . E 3 HOH A 35 571 571 HOH WAT . E 3 HOH A 36 572 572 HOH WAT . E 3 HOH A 37 578 578 HOH WAT . E 3 HOH A 38 580 580 HOH WAT . E 3 HOH A 39 582 582 HOH WAT . E 3 HOH A 40 583 583 HOH WAT . E 3 HOH A 41 587 587 HOH WAT . E 3 HOH A 42 589 589 HOH WAT . E 3 HOH A 43 590 590 HOH WAT . E 3 HOH A 44 591 591 HOH WAT . E 3 HOH A 45 594 594 HOH WAT . E 3 HOH A 46 598 598 HOH WAT . E 3 HOH A 47 600 600 HOH WAT . E 3 HOH A 48 601 601 HOH WAT . E 3 HOH A 49 606 606 HOH WAT . E 3 HOH A 50 607 607 HOH WAT . F 3 HOH B 1 506 506 HOH WAT . F 3 HOH B 2 507 507 HOH WAT . F 3 HOH B 3 510 510 HOH WAT . F 3 HOH B 4 511 511 HOH WAT . F 3 HOH B 5 512 512 HOH WAT . F 3 HOH B 6 515 515 HOH WAT . F 3 HOH B 7 518 518 HOH WAT . F 3 HOH B 8 522 522 HOH WAT . F 3 HOH B 9 524 524 HOH WAT . F 3 HOH B 10 525 525 HOH WAT . F 3 HOH B 11 526 526 HOH WAT . F 3 HOH B 12 528 528 HOH WAT . F 3 HOH B 13 530 530 HOH WAT . F 3 HOH B 14 533 533 HOH WAT . F 3 HOH B 15 535 535 HOH WAT . F 3 HOH B 16 538 538 HOH WAT . F 3 HOH B 17 540 540 HOH WAT . F 3 HOH B 18 541 541 HOH WAT . F 3 HOH B 19 543 543 HOH WAT . F 3 HOH B 20 544 544 HOH WAT . F 3 HOH B 21 545 545 HOH WAT . F 3 HOH B 22 546 546 HOH WAT . F 3 HOH B 23 547 547 HOH WAT . F 3 HOH B 24 548 548 HOH WAT . F 3 HOH B 25 549 549 HOH WAT . F 3 HOH B 26 550 550 HOH WAT . F 3 HOH B 27 551 551 HOH WAT . F 3 HOH B 28 553 553 HOH WAT . F 3 HOH B 29 555 555 HOH WAT . F 3 HOH B 30 556 556 HOH WAT . F 3 HOH B 31 560 560 HOH WAT . F 3 HOH B 32 562 562 HOH WAT . F 3 HOH B 33 563 563 HOH WAT . F 3 HOH B 34 566 566 HOH WAT . F 3 HOH B 35 569 569 HOH WAT . F 3 HOH B 36 573 573 HOH WAT . F 3 HOH B 37 574 574 HOH WAT . F 3 HOH B 38 575 575 HOH WAT . F 3 HOH B 39 576 576 HOH WAT . F 3 HOH B 40 577 577 HOH WAT . F 3 HOH B 41 579 579 HOH WAT . F 3 HOH B 42 581 581 HOH WAT . F 3 HOH B 43 584 584 HOH WAT . F 3 HOH B 44 585 585 HOH WAT . F 3 HOH B 45 586 586 HOH WAT . F 3 HOH B 46 588 588 HOH WAT . F 3 HOH B 47 592 592 HOH WAT . F 3 HOH B 48 593 593 HOH WAT . F 3 HOH B 49 595 595 HOH WAT . F 3 HOH B 50 596 596 HOH WAT . F 3 HOH B 51 597 597 HOH WAT . F 3 HOH B 52 599 599 HOH WAT . F 3 HOH B 53 602 602 HOH WAT . F 3 HOH B 54 603 603 HOH WAT . F 3 HOH B 55 604 604 HOH WAT . F 3 HOH B 56 605 605 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 SHM . . . C 2 -4.68 34.414 10.153 1 11.82 ? C1 SHM 401 A 1 HETATM 2 C C2 SHM . . . C 2 -5.976 34.489 10.974 1 12.53 ? C2 SHM 401 A 1 HETATM 3 N N3 SHM . . . C 2 -5.676 35.566 11.929 1 12.53 ? N3 SHM 401 A 1 HETATM 4 C C4 SHM . . . C 2 -4.434 36.058 11.732 1 13.03 ? C4 SHM 401 A 1 HETATM 5 N N5 SHM . . . C 2 -3.807 35.438 10.718 1 13.07 ? N5 SHM 401 A 1 HETATM 6 C C6 SHM . . . C 2 -6.22 33.08 11.648 1 12.88 ? C6 SHM 401 A 1 HETATM 7 S S7 SHM . . . C 2 -4.525 32.445 11.873 1 11.53 ? S7 SHM 401 A 1 HETATM 8 C C8 SHM . . . C 2 -3.985 33.019 10.225 1 11.61 ? C8 SHM 401 A 1 HETATM 9 C C9 SHM . . . C 2 -7.065 33.12 12.957 1 13 ? C9 SHM 401 A 1 HETATM 10 C C10 SHM . . . C 2 -7.505 31.74 13.462 1 13.8 ? C10 SHM 401 A 1 HETATM 11 C C11 SHM . . . C 2 -8.758 31.841 14.342 1 11.83 ? C11 SHM 401 A 1 HETATM 12 C C12 SHM . . . C 2 -9.007 30.503 15.084 1 15.33 ? C12 SHM 401 A 1 HETATM 13 C C13 SHM . . . C 2 -9.242 29.332 14.084 1 17.63 ? C13 SHM 401 A 1 HETATM 14 C C14 SHM . . . C 2 -10.569 29.436 13.348 1 21.46 ? C14 SHM 401 A 1 HETATM 15 O O15 SHM . . . C 2 -10.897 28.483 12.441 1 27.02 ? O15 SHM 401 A 1 HETATM 16 O O16 SHM . . . C 2 -11.361 30.354 13.539 1 21.8 ? O16 SHM 401 A 1 HETATM 17 O O17 SHM . . . C 2 -3.935 36.965 12.399 1 13.76 ? O17 SHM 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 17 #